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David Horner

Research Profile

Concepts & Ideas

Anatomy

Genes & Molecular Sequences

Amino Acid Sequences

Phenomena

Evolution, Molecular

Procedures

Chemicals & Drugs

Living Beings

Neocallimastix

Physiology

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Publications

TOP 3
Matteo Chiara; Graziano Pesole; David S Horner
SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.
Silvia Moleri; Giuseppe Cappellano; Germano Gaudenzi; Solei Cermenati; Franco Cotelli; David S Horner; Monica Beltrame
The HMGB protein gene family in zebrafish: Evolution and embryonic expression patterns.
Erica Mica; Viviana Piccolo; Massimo Delledonne; Alberto Ferrarini; Mario Pezzotti; C Casati; Cristian Del Fabbro; Giorgio Valle; Alberto Policriti; Michele Morgante; Graziano Pesole; M Enrico Pè; David S Horner
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.

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All Publications

2012: Matteo Chiara; Graziano Pesole; David S Horner
SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.
Nucleic acids research 2012;40(18):e145.
2011: Silvia Moleri; Giuseppe Cappellano; Germano Gaudenzi; Solei Cermenati; Franco Cotelli; David S Horner; Monica Beltrame
The HMGB protein gene family in zebrafish: Evolution and embryonic expression patterns.
Gene expression patterns : GEP 2011;11(1-2):3-11.
2009: Erica Mica; Viviana Piccolo; Massimo Delledonne; Alberto Ferrarini; Mario Pezzotti; C Casati; Cristian Del Fabbro; Giorgio Valle; Alberto Policriti; Michele Morgante; Graziano Pesole; M Enrico Pè; David S Horner
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.
BMC genomics 2009;10():558.
2009: Matteo Rè; Graziano Pesole; David S Horner
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.
BMC bioinformatics 2009;10():282.
2008: Jari Intra; Giulio Pavesi; David S Horner
Phylogenetic analyses suggest multiple changes of substrate specificity within the glycosyl hydrolase 20 family.
BMC evolutionary biology 2008;8():214.
2008: David S Horner; Walter Pirovano; Graziano Pesole
Correlated substitution analysis and the prediction of amino acid structural contacts.
Briefings in bioinformatics 2008;9(1):46-56.
2007: Jari Intra; Maria-Elisa Perotti; Giulio Pavesi; David S Horner
Comparative and phylogenetic analysis of alpha-L-fucosidase genes.
Gene 2007;392(1-2):34-46.
2007: Jan O Andersson; Asa M Sjögren; David S Horner; Colleen A Murphy; Patricia L Dyal; Staffan G Svärd; John M Logsdon; Mark A Ragan; Robert Hirt; Andrew J Roger
A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution.
BMC genomics 2007;8():51.
2007: David S Horner; Konstantinos Lefkimmiatis; Aurelio Reyes; Carmela Gissi; Cecilia Saccone; Graziano Pesole
Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus.
BMC evolutionary biology 2007;7():16.
2005: Vladimír Hampl; David S Horner; Patricia L Dyal; Jaroslav Kulda; Jaroslav Flegr; Peter G Foster; T Martin Embley
Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata.
Molecular biology and evolution 2005;22(12):2508-18.
2005: Ka Wai Chan; Dirk-Jan Slotboom; Sian Cox; T Martin Embley; Olivier Fabre; Mark van der Giezen; Marilyn Harding; David S Horner; Edmund R S Kunji; Gloria León-Avila; Jorge Tovar
A novel ADP/ATP transporter in the mitosome of the microaerophilic human parasite Entamoeba histolytica.
Current biology : CB 2005;15(8):737-42.
2004: lorenza putignani; Andy Tait; Huw V Smith; David S Horner; J Tovar; Laurence Tetley; Jonathan Wastling
Characterization of a mitochondrion-like organelle in Cryptosporidium parvum.
Parasitology 2004;129(Pt 1):1-18.
2004: Flavio Mignone; David S Horner; Graziano Pesole
WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments.
Bioinformatics (Oxford, England) 2004;20(8):1331-3.
2004: David S Horner; Graziano Pesole
Phylogenetic analyses: a brief introduction to methods and their application.
Expert review of molecular diagnostics 2004;4(3):339-50.
2003: T Martin Embley; Mark van der Giezen; David S Horner; Patricia L Dyal; Samantha Bell; Peter G Foster
Hydrogenosomes, mitochondria and early eukaryotic evolution.
IUBMB life 2003;55(7):387-95.
2003: Lucie Parenicová; Stefan de Folter; Martin Kieffer; David S Horner; Cristina Favalli; Jacqueline Busscher; Holly E Cook; Richard M Ingram; Martin M Kater; Brendan Davies; Gerco C Angenent; Lucia Colombo
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
The Plant cell 2003;15(7):1538-51.
2003: Mark van der Giezen; Graeme M Birdsey; David S Horner; John M Lucocq; Patricia L Dyal; Marlene Benchimol; Christopher J Danpure; T Martin Embley
Fungal hydrogenosomes contain mitochondrial heat-shock proteins.
Molecular biology and evolution 2003;20(7):1051-61.
2003: David S Horner; Graziano Pesole
The estimation of relative site variability among aligned homologous protein sequences.
Bioinformatics (Oxford, England) 2003;19(5):600-6.
2003: T Martin Embley; Mark van der Giezen; David S Horner; Patricia L Dyal; Peter Foster
Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2003;358(1429):191-201; discussion 201-2.
2002: Elizabeth A Davidson; Mark van der Giezen; David S Horner; T Martin Embley; Christopher J Howe
An [Fe] hydrogenase from the anaerobic hydrogenosome-containing fungus Neocallimastix frontalis L2.
Gene 2002;296(1-2):45-52.
2002: Lidya Sánchez; David S Horner; Dorothy Moore; Katrin Henze; T Martin Embley; Miklós Müller
Fructose-1,6-bisphosphate aldolases in amitochondriate protists constitute a single protein subfamily with eubacterial relationships.
Gene 2002;295(1):51-9.
2002: David S Horner; Burkhard Heil; Thomas Happe; T Martin Embley
Iron hydrogenases--ancient enzymes in modern eukaryotes.
Trends in biochemical sciences 2002;27(3):148-53.
2002: Mark van der Giezen; Dirk-Jan Slotboom; David S Horner; Patricia L Dyal; Marilyn Harding; Gang-Ping Xue; T Martin Embley; Edmund R S Kunji
Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: a common origin for both organelles.
The EMBO journal 2002;21(4):572-9.
2001: Katrin Henze; David S Horner; S Suguri; D V Moore; LB Sánchez; Miklós Müller; T Martin Embley
Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis.
Gene 2001;281(1-2):123-31.
2001: David S Horner; T Martin Embley
Chaperonin 60 phylogeny provides further evidence for secondary loss of mitochondria among putative early-branching eukaryotes.
Molecular biology and evolution 2001;18(10):1970-5.
2000: David S Horner; Peter G Foster; T Martin Embley
Iron hydrogenases and the evolution of anaerobic eukaryotes.
Molecular biology and evolution 2000;17(11):1695-709.
1999: David S Horner; Robert Hirt; T Martin Embley
A single eubacterial origin of eukaryotic pyruvate: ferredoxin oxidoreductase genes: implications for the evolution of anaerobic eukaryotes.
Molecular biology and evolution 1999;16(9):1280-91.