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Ya-Ming Hou

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Co-Publications
Name
12
Gamper, Howard
12
Lipman, Richard
12
Perona, John
11
Zhang, Chun-Mei
7
Evilia, Caryn
6
Hamann, CS
6
Christian, Thomas
4
Cooperman, Barry
4
Arar, Khalil
4
Newberry, Kate
3
Pan, Dongli
3
Francklyn, Christopher
3
Kirillov, Stanislav
3
Gewirtz, Alan
3
Sowers, Kevin

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Publications

TOP 3
Kim Sangbumn; Liu Cuiping; Halkidis Konstantine; Gamper Howard B; Hou Ya-Ming
Distinct kinetic determinants for the stepwise CCA addition to tRNA.
Macauley Sheridan R; Zimmerman Sabrina A; Apolinario Ethel E; Evilia Caryn; Hou Ya-Ming; Ferry James G; Sowers Kevin R
The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo.
Lahoud Georges; Arar Khalil; Hou Ya-Ming; Gamper Howard
RecA-mediated strand invasion of DNA by oligonucleotides substituted with 2-aminoadenine and 2-thiothymine.

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All Publications

2009: Kim Sangbumn; Liu Cuiping; Halkidis Konstantine; Gamper Howard B; Hou Ya-Ming
Distinct kinetic determinants for the stepwise CCA addition to tRNA.
RNA (New York, N.Y.) 2009;15(10):1827-36.
2009: Macauley Sheridan R; Zimmerman Sabrina A; Apolinario Ethel E; Evilia Caryn; Hou Ya-Ming; Ferry James G; Sowers Kevin R
The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo.
Biochemistry 2009;48(5):817-9.
2008: Lahoud Georges; Arar Khalil; Hou Ya-Ming; Gamper Howard
RecA-mediated strand invasion of DNA by oligonucleotides substituted with 2-aminoadenine and 2-thiothymine.
Nucleic acids research 2008;36(21):6806-15.
2008: Zhang Chun-Mei; Liu Cuiping; Christian Thomas; Gamper Howard; Rozenski Jef; Pan Dongli; Randolph John B; Wickstrom Eric; Cooperman Barry S; Hou Ya-Ming
Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3' end.
RNA (New York, N.Y.) 2008;14(10):2245-53.
2008: Hauenstein Scott I; Hou Ya-Ming; Perona John J
The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity.
The Journal of biological chemistry 2008;283(32):21997-2006.
2008: Dupasquier Marcel; Kim Sangbumn; Halkidis Konstantine; Gamper Howard; Hou Ya-Ming
tRNA integrity is a prerequisite for rapid CCA addition: implication for quality control.
Journal of molecular biology 2008;379(3):579-88.
2008: Lahoud Georges; Timoshchuk Victor; Lebedev Alexandre; de Vega Miguel; Salas Margarita; Arar Khalil; Hou Ya-Ming; Gamper Howard
Enzymatic synthesis of structure-free DNA with pseudo-complementary properties.
Nucleic acids research 2008;36(10):3409-19.
2008: Pan Dongli; Zhang Chun-Mei; Kirillov Stanislav; Hou Ya-Ming; Cooperman Barry S
Perturbation of the tRNA tertiary core differentially affects specific steps of the elongation cycle.
The Journal of biological chemistry 2008;283(26):18431-40.
2008: Zhang Chun-Mei; Liu Cuiping; Slater Simon; Hou Ya-Ming
Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys).
Nature structural & molecular biology 2008;15(5):507-14.
2008: Francklyn Christopher S; First Eric A; Perona John J; Hou Ya-Ming
Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases.
Methods (San Diego, Calif.) 2008;44(2):100-18.
2007: Christian Thomas; Hou Ya-Ming
Distinct determinants of tRNA recognition by the TrmD and Trm5 methyl transferases.
Journal of molecular biology 2007;373(3):623-32.
2007: Perona John J; Hou Ya-Ming
Indirect readout of tRNA for aminoacylation.
Biochemistry 2007;46(37):10419-32.
2007: Betteridge Thu; Liu Hanqing; Gamper Howard; Kirillov Stanislav; Cooperman Barry S; Hou Ya-Ming
Fluorescent labeling of tRNAs for dynamics experiments.
RNA (New York, N.Y.) 2007;13(9):1594-601.
2007: Liu Cuiping; Gamper Howard; Shtivelband Svetlana; Hauenstein Scott; Perona John J; Hou Ya-Ming
Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase.
Journal of molecular biology 2007;367(4):1063-78.
2006: Zhang Chun-Mei; Perona John J; Ryu Kang; Francklyn Christopher; Hou Ya-Ming
Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases.
Journal of molecular biology 2006;361(2):300-11.
2006: Christian Thomas; Evilia Caryn; Hou Ya-Ming
Catalysis by the second class of tRNA(m1G37) methyl transferase requires a conserved proline.
Biochemistry 2006;45(24):7463-73.
2006: Gamper Howard B; Arar Khalil; Gewirtz Alan; Hou Ya-Ming
Unrestricted hybridization of oligonucleotides to structure-free DNA.
Biochemistry 2006;45(22):6978-86.
2006: Evilia Caryn; Hou Ya-Ming
Acquisition of an insertion peptide for efficient aminoacylation by a halophile tRNA synthetase.
Biochemistry 2006;45(22):6835-45.
2006: Pan Dongli; Kirillov Stanislav; Zhang Chun-Mei; Hou Ya-Ming; Cooperman Barry S
Rapid ribosomal translocation depends on the conserved 18-55 base pair in P-site transfer RNA.
Nature structural & molecular biology 2006;13(4):354-9.
2006: Hou Ya-Ming; Li Zhi; Gamper Howard
Isolation of a site-specifically modified RNA from an unmodified transcript.
Nucleic acids research 2006;34(3):e21.
2005: Hou Ya-Ming; Gu Shan-Qing; Zhou Haiping; Ingerman Lindsey
Metal-ion-dependent catalysis and specificity of CCA-adding enzymes: a comparison of two classes.
Biochemistry 2005;44(38):12849-59.
2005: Gamper Howard B; Arar Khalil; Gewirtz Alan; Hou Ya-Ming
Unrestricted accessibility of short oligonucleotides to RNA.
RNA (New York, N.Y.) 2005;11(9):1441-7.
2005: Zhang Chun-Mei; Hou Ya-Ming
Domain-domain communication for tRNA aminoacylation: the importance of covalent connectivity.
Biochemistry 2005;44(19):7240-9.
2005: Shitivelband Svetlana; Hou Ya-Ming
Breaking the stereo barrier of amino acid attachment to tRNA by a single nucleotide.
Journal of molecular biology 2005;348(3):513-21.
2004: Hauenstein Scott; Zhang Chun-Mei; Hou Ya-Ming; Perona John J
Shape-selective RNA recognition by cysteinyl-tRNA synthetase.
Nature structural & molecular biology 2004;11(11):1134-41.
2004: Ougland Rune; Zhang Chun-Mei; Liiv Aivar; Johansen Rune F; Seeberg Erling; Hou Ya-Ming; Remme Jaanus; Falnes Pål Ø
AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation.
Molecular cell 2004;16(1):107-16.
2004: Gamper Howard B; Gewirtz Alan; Edwards Jillian; Hou Ya-Ming
Modified bases in RNA reduce secondary structure and enhance hybridization.
Biochemistry 2004;43(31):10224-36.
2004: Christian Thomas; Evilia Caryn; Williams Sandra; Hou Ya-Ming
Distinct origins of tRNA(m1G37) methyltransferase.
Journal of molecular biology 2004;339(4):707-19.
2004: Zhang Chun-Mei; Hou Ya-Ming
Synthesis of cysteinyl-tRNACys by a prolyl-tRNA synthetase.
RNA biology 2004;1(1):35-41.
2003: Zhang Chun-Mei; Perona John J; Hou Ya-Ming
Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase.
Biochemistry 2003;42(37):10931-7.
2003: Evilia Caryn; Ming Xiaotian; DasSarma Shiladitya; Hou Ya-Ming
Aminoacylation of an unusual tRNA(Cys) from an extreme halophile.
RNA (New York, N.Y.) 2003;9(7):794-801.
2003: Lipman Richard S A; Chen Jing; Evilia Caryn; Vitseva Olga; Hou Ya-Ming
Association of an aminoacyl-tRNA synthetase with a putative metabolic protein in archaea.
Biochemistry 2003;42(24):7487-96.
2003: Zhang Chun-Mei; Christian Thomas; Newberry Kate J; Perona John J; Hou Ya-Ming
Zinc-mediated amino acid discrimination in cysteinyl-tRNA synthetase.
Journal of molecular biology 2003;327(5):911-7.
2002: Francklyn Christopher; Perona John J; Puetz Joern; Hou Ya-Ming
Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation.
RNA (New York, N.Y.) 2002;8(11):1363-72.
2002: Newberry Kate J; Hou Ya-Ming; Perona John J
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase.
The EMBO journal 2002;21(11):2778-87.
2002: Ming Xiaotian; Smith Kristina; Suga Hiroaki; Hou Ya-Ming
Recognition of tRNA backbone for aminoacylation with cysteine: evolution from Escherichia coli to human.
Journal of molecular biology 2002;318(5):1207-20.
2002: Seth Malini; Thurlow David L; Hou Ya-Ming
Poly(C) synthesis by class I and class II CCA-adding enzymes.
Biochemistry 2002;41(14):4521-32.
2002: Lipman Richard S A; Beuning Penny J; Musier-Forsyth Karin; Hou Ya-Ming
Amino acid activation of a dual-specificity tRNA synthetase is independent of tRNA.
Journal of molecular biology 2002;316(3):421-7.
2002: Lipman Richard S A; Wang Jinling; Sowers Kevin R; Hou Ya-Ming
Prevention of mis-aminoacylation of a dual-specificity aminoacyl-tRNA synthetase.
Journal of molecular biology 2002;315(5):943-9.
2001: Tardif K D; Liu M; Vitseva O; Hou Y M; Horowitz J
Misacylation and editing by Escherichia coli valyl-tRNA synthetase: evidence for two tRNA binding sites.
Biochemistry 2001;40(27):8118-25.
2001: Burke B; Lipman R S; Shiba K; Musier-Forsyth K; Hou Y M
Divergent adaptation of tRNA recognition by Methanococcus jannaschii prolyl-tRNA synthetase.
The Journal of biological chemistry 2001;276(23):20286-91.
2001: Davidson E; Caffarella J; Vitseva O; Hou Y M; King M P
Isolation of two cDNAs encoding functional human cytoplasmic cysteinyl-tRNA synthetase.
Biological chemistry 2001;382(3):399-406.
2001: Hou Y M; Zhang X; Holland J A; Davis D R
An important 2'-OH group for an RNA-protein interaction.
Nucleic acids research 2001;29(4):976-85.
2000: Gamper H B; Hou Y M; Kmiec E B
Evidence for a four-strand exchange catalyzed by the RecA protein.
Biochemistry 2000;39(49):15272-81.
2000: Christian T; Lipman R S; Evilia C; Hou Y M
Alternative design of a tRNA core for aminoacylation.
Journal of molecular biology 2000;303(4):503-14.
2000: Hou Y M
Unusual synthesis by the Escherichia coli CCA-adding enzyme.
RNA (New York, N.Y.) 2000;6(7):1031-43.
2000: Hou Y M; Sundaram M; Zhang X; Holland J A; Davis D R
Recognition of functional groups in an RNA helix by a class I tRNA synthetase.
RNA (New York, N.Y.) 2000;6(7):922-7.
2000: Lipman R S; Sowers K R; Hou Y M
Synthesis of cysteinyl-tRNA(Cys) by a genome that lacks the normal cysteine-tRNA synthetase.
Biochemistry 2000;39(26):7792-8.
2000: Sherlin L D; Bullock T L; Newberry K J; Lipman R S; Hou Y M; Beijer B; Sproat B S; Perona J J
Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases.
Journal of molecular biology 2000;299(2):431-46.
2000: Madore E; Lipman R S; Hou Y M; Lapointe J
Evidence for unfolding of the single-stranded GCCA 3'-End of a tRNA on its aminoacyl-tRNA synthetase from a stacked helical to a foldback conformation.
Biochemistry 2000;39(23):6791-8.
2000: Hamann C S; Hou Y M
Probing a tRNA core that contributes to aminoacylation.
Journal of molecular biology 2000;295(4):777-89.
1999: Hou Y M; Motegi H; Lipman R S; Hamann C S; Shiba K
Conservation of a tRNA core for aminoacylation.
Nucleic acids research 1999;27(24):4743-50.
1999: Hamann C S; Sowers K R; Lipman R S; Hou Y M
An archaeal aminoacyl-tRNA synthetase missing from genomic analysis.
Journal of bacteriology 1999;181(18):5880-4.
1999: Hou Y M
Transfer RNAs and pathogenicity islands.
Trends in biochemical sciences 1999;24(8):295-8.
1999: Newberry K J; Kohn J; Hou Y M; Perona J J
Crystallization and preliminary diffraction analysis of Escherichia coli cysteinyl-tRNA synthetase.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 5):1046-7.
1998: Lipman R S; Hou Y M
Aminoacylation of tRNA in the evolution of an aminoacyl-tRNA synthetase.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(23):13495-500.
1998: Hou Y M; Lipman R S; Zarutskie J A
A tRNA circularization assay: evidence for the variation of the conformation of the CCA end.
RNA (New York, N.Y.) 1998;4(7):733-8.
1997: Hamann C S; Hou Y M
An RNA structural determinant for tRNA recognition.
Biochemistry 1997;36(26):7967-72.
1997: Hamann C S; Hou Y M
A strategy of tRNA recognition that includes determinants of RNA structure.
Bioorganic & medicinal chemistry 1997;5(6):1011-9.
1997: Hou Y M
Discriminating among the discriminator bases of tRNAs.
Chemistry & biology 1997;4(2):93-6.
1996: Hou Y M; Gamper H B
Inhibition of tRNA aminoacylation by 2'-O-methyl oligonucleotides.
Biochemistry 1996;35(48):15340-8.
1996: Ohannesian D W; Oh J; Hou Y M
Mutational analysis of a leucine heptad repeat motif in a class I aminoacyl-tRNA synthetase.
Biochemistry 1996;35(45):14405-12.
1995: Sterner T; Jansen M; Hou Y M
Structural and functional accommodation of nucleotide variations at a conserved tRNA tertiary base pair.
RNA (New York, N.Y.) 1995;1(8):841-51.
1995: Hou Y M; Sterner T; Bhalla R
Evidence for a conserved relationship between an acceptor stem and a tRNA for aminoacylation.
RNA (New York, N.Y.) 1995;1(7):707-13.
1995: Hamann C S; Hou Y M
Enzymatic aminoacylation of tRNA acceptor stem helices with cysteine is dependent on a single nucleotide.
Biochemistry 1995;34(19):6527-32.
1995: Hou Y M; Sterner T; Jansen M
Permutation of a pair of tertiary nucleotides in a transfer RNA.
Biochemistry 1995;34(9):2978-84.
1995: Hou Y M
RNA recognition based on a pair of tertiary hydrogen interaction.
Nucleic acids symposium series 1995;(33):172-5.
1994: Hou Y M
Structural elements that contribute to an unusual tertiary interaction in a transfer RNA.
Biochemistry 1994;33(15):4677-81.
1993: Hou Y M
The tertiary structure of tRNA and the development of the genetic code.
Trends in biochemical sciences 1993;18(10):362-4.

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