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Hongzhan Huang

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TOP 3
Karen E Ross; Cecilia N Arighi; Hongzhan Huang; Darren A Natale; Jia Ren; Cathy H Wu
Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint.
Rajaram Gana; Hongzhan Huang; Shruti Rao; Cathy Wu; Sona Vasudevan
Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach.
Qinghua Wang; Cathy H Wu; Cecilia N Arighi; Chuming Chen; Hongzhan Huang; Benjamin L King; BF Kingham; Shallee T Page; Shawn W Polson; Marc Farnum Rendino; William Kelley Thomas; Daniel W Udwary; James Vincent
Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.

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All Publications

2013: Karen E Ross; Cecilia N Arighi; Hongzhan Huang; Darren A Natale; Jia Ren; Cathy H Wu
Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint.
Frontiers in genetics 2013;4():62.
2013: Rajaram Gana; Hongzhan Huang; Shruti Rao; Cathy Wu; Sona Vasudevan
Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach.
BMC structural biology 2013;13():6.
2012: Qinghua Wang; Cathy H Wu; Cecilia N Arighi; Chuming Chen; Hongzhan Huang; Benjamin L King; BF Kingham; Shallee T Page; Shawn W Polson; Marc Farnum Rendino; William Kelley Thomas; Daniel W Udwary; James Vincent
Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.
Database : the journal of biological databases and curation 2012;2012():bar064.
2011: Hongzhan Huang; Peter B McGarvey; Baris E Suzek; Raja Mazumder; Jian Zhang; Yongxing Chen; Cathy H Wu
A comprehensive protein-centric ID mapping service for molecular data integration.
Bioinformatics (Oxford, England) 2011;27(8):1190-1.
2011: Zhang-Zhi Hu; Hongzhan Huang; V Craig Jordan; Benjamin L Kagan; Jordan V Li; Anna T Riegel; Dean S Rosenthal; Cathy Wu; Lihua Zhang; Eric A Ariazi; Anton Wellstein
Proteomic analysis of pathways involved in estrogen-induced growth and apoptosis of breast cancer cells.
PloS one 2011;6(6):e20410.
2011: Chuming Chen; Darren A Natale; Robert D Finn; Hongzhan Huang; Jian Zhang; Cathy H Wu; Raja Mazumder
Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.
PloS one 2011;6(4):e18910.
2011: Zhang-Zhi Hu; Hongzhan Huang; Cathy H Wu; Mira Jung; Anatoly Dritschilo; Anna T Riegel; Anton Wellstein
Omics-based molecular target and biomarker identification.
Methods in molecular biology (Clifton, N.J.) 2011;719():547-71.
2011: Peter B McGarvey; Jian Zhang; Darren A Natale; Cathy H Wu; Hongzhan Huang
Protein-centric data integration for functional analysis of comparative proteomics data.
Methods in molecular biology (Clifton, N.J.) 2011;694():323-39.
2011: Sona Vasudevan; CR Vinayaka; Darren A Natale; Hongzhan Huang; Robel Y Kahsay; Cathy H Wu
Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase.
Methods in molecular biology (Clifton, N.J.) 2011;694():91-105.
2011: Darren A Natale; Cecilia N Arighi; Winona C Barker; Judith A Blake; Carol Bult; Michael Caudy; Harold J Drabkin; Peter D'Eustachio; Alexei V Evsikov; Hongzhan Huang; Jules Nchoutmboube; Natalia V Roberts; Barry Smith; Jian Zhang; Cathy H Wu
The Protein Ontology: a structured representation of protein forms and complexes.
Nucleic acids research 2011;39(Database issue):D539-45.
2010: Jinjiang Fan; Kassim Traore; Wenping Li; Hakima Amri; Hongzhan Huang; Cathy Wu; Haolin Chen; Barry R Zirkin; Vassilios Papadopoulos
Molecular mechanisms mediating the effect of mono-(2-ethylhexyl) phthalate on hormone-stimulated steroidogenesis in MA-10 mouse tumor Leydig cells.
Endocrinology 2010;151(7):3348-62.
2010: Kai Tang; Hongzhan Huang; Nianzhi Jiao; Cathy H Wu
Phylogenomic analysis of marine Roseobacters.
PloS one 2010;5(7):e11604.
2009: Peter B McGarvey; Hongzhan Huang; Raja Mazumder; Jian Zhang; Yongxing Chen; Chengdong Zhang; Stephen Cammer; Rebecca Will; Margie Odle; Bruno Sobral; Margaret Moore; Cathy H Wu
Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets.
PloS one 2009;4(9):e7162.
2008: C Zhang; Oswald R Crasta; S Cammer; R Will; R Kenyon; D Sullivan; Q Yu; W Sun; R Jha; D Liu; T Xue; Y Zhang; M Moore; P McGarvey; Hongzhan Huang; Yongxing Chen; J Zhang; Raja Mazumder; Chengcang Wu; Bruno Sobral
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data.
Nucleic acids research 2008;36(Database issue):D884-91.
2007: Baris E Suzek; Hongzhan Huang; Peter McGarvey; Raja Mazumder; Cathy H Wu
UniRef: comprehensive and non-redundant UniProt reference clusters.
Bioinformatics (Oxford, England) 2007;23(10):1282-8.
2007: Hongzhan Huang; Zhang-Zhi Hu; Cecilia N Arighi; Cathy H Wu
Integration of bioinformatics resources for functional analysis of gene expression and proteomic data.
Frontiers in bioscience : a journal and virtual library 2007;12():5071-88.
2006: Anastasia N Nikolskaya; Cecilia N Arighi; Hongzhan Huang; Winona C Barker; Cathy H Wu
PIRSF family classification system for protein functional and evolutionary analysis.
Evolutionary bioinformatics online 2006;2():197-209.
2006: Cathy H Wu; Rolf Apweiler; Amos Bairoch; Darren A Natale; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Raja Mazumder; Claire O'Donovan; Nicole Redaschi; Baris E Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic acids research 2006;34(Database issue):D187-91.
2005: Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
The Universal Protein Resource (UniProt).
Nucleic acids research 2005;33(Database issue):D154-9.
2004: Wenping Li; Hakima Amri; Hongzhan Huang; Cathy Wu; Vassilios Papadopoulos
Gene and protein profiling of the response of MA-10 Leydig tumor cells to human chorionic gonadotropin.
Journal of andrology 2004;25(6):900-13.
2004: Cathy H Wu; Hongzhan Huang; Anastasia N Nikolskaya; Zhanghi Hu; Winona C Barker
The iProClass integrated database for protein functional analysis.
Computational biology and chemistry 2004;28(1):87-96.
2004: Rolf Apweiler; Amos Bairoch; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
UniProt: the Universal Protein knowledgebase.
Nucleic acids research 2004;32(Database issue):D115-9.
2004: Cathy H Wu; Anastasia N Nikolskaya; Hongzhan Huang; Lai-Su L Yeh; Darren A Natale; CR Vinayaka; Zhang-Zhi Hu; Raja Mazumder; Sandeep Kumar; Panagiotis Kourtesis; Robert S Ledley; Baris E Suzek; Leslie Arminski; Yongxing Chen; Jian Zhang; Jorge Louie Cardenas; Sehee Chung; Jorge Castro-Alvear; Georgi Dinkov; Winona C Barker
PIRSF: family classification system at the Protein Information Resource.
Nucleic acids research 2004;32(Database issue):D112-4.
2003: Cathy H Wu; Hongzhan Huang; Lai-Su L Yeh; Winona C Barker
Protein family classification and functional annotation.
Computational biology and chemistry 2003;27(1):37-47.
2003: Hongzhan Huang; Winona C Barker; Yongxing Chen; Cathy H Wu
iProClass: an integrated database of protein family, function and structure information.
Nucleic acids research 2003;31(1):390-2.
2003: Cathy H Wu; Lai-Su L Yeh; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhangzhi Hu; Panagiotis Kourtesis; Robert S Ledley; Baris E Suzek; CR Vinayaka; Jian Zhang; Winona C Barker
The Protein Information Resource.
Nucleic acids research 2003;31(1):345-7.
2002: Cathy H Wu; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhang-Zhi Hu; Robert S Ledley; Kali C Lewis; Hans-Werner Mewes; Bruce C Orcutt; Baris E Suzek; Akira Tsugita; CR Vinayaka; Lai-Su L Yeh; Jian Zhang; Winona C Barker
The Protein Information Resource: an integrated public resource of functional annotation of proteins.
Nucleic acids research 2002;30(1):35-7.
2001: Cathy H Wu; C Xiao; Z Hou; Hongzhan Huang; Winona C Barker
iProClass: an integrated, comprehensive and annotated protein classification database.
Nucleic acids research 2001;29(1):52-4.
2001: Winona C Barker; JS Garavelli; Z Hou; Hongzhan Huang; Robert S Ledley; PB McGarvey; Hans-Werner Mewes; Bruce C Orcutt; F Pfeiffer; Akira Tsugita; CR Vinayaka; C Xiao; Lai-Su L Yeh; C Wu
Protein Information Resource: a community resource for expert annotation of protein data.
Nucleic acids research 2001;29(1):29-32.
2000: PB McGarvey; Hongzhan Huang; Winona C Barker; Bruce C Orcutt; JS Garavelli; GY Srinivasarao; Lai-Su L Yeh; C Xiao; Cathy H Wu
PIR: a new resource for bioinformatics.
Bioinformatics (Oxford, England) 2000;16(3):290-1.
2000: Hongzhan Huang; C Xiao; Cathy H Wu
ProClass protein family database.
Nucleic acids research 2000;28(1):273-6.
2000: Winona C Barker; JS Garavelli; Hongzhan Huang; PB McGarvey; Bruce C Orcutt; GY Srinivasarao; C Xiao; Lai-Su L Yeh; Robert S Ledley; J F Janda; F Pfeiffer; Hans-Werner Mewes; Akira Tsugita; C Wu
The protein information resource (PIR).
Nucleic acids research 2000;28(1):41-4.