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Alexander Hüttenhofer

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Genomics

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Konstantinia Skreka; Marek Zywicki; Galina Apostolova; Georg Dechant; Matthias Griehl; Irina-Roxanna Nat; Mathieu REDERSTORFF; Ahmad Salti; Simon Schafferer; Alexander Hüttenhofer
Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation.
Konstantinia Skreka; Marek Zywicki; Alexander Hüttenhofer; Michael Karbiener; Marcel Scheideler; Mathieu REDERSTORFF
Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray.
Elisabeth Sonnleitner; Theresa Sorger-Domenigg; Paul Williams; Rolf Backofen; Nicolas Gonzalez; Dieter Haas; Stephan Heeb; Alexander Hüttenhofer; Andreas S Richter; Udo Bläsi
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal.

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2012: Konstantinia Skreka; Marek Zywicki; Galina Apostolova; Georg Dechant; Matthias Griehl; Irina-Roxanna Nat; Mathieu REDERSTORFF; Ahmad Salti; Simon Schafferer; Alexander Hüttenhofer
Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation.
Nucleic acids research 2012;40(13):6001-15.
2012: Konstantinia Skreka; Marek Zywicki; Alexander Hüttenhofer; Michael Karbiener; Marcel Scheideler; Mathieu REDERSTORFF
Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray.
Journal of nucleic acids 2012;2012():283560.
2011: Elisabeth Sonnleitner; Theresa Sorger-Domenigg; Paul Williams; Rolf Backofen; Nicolas Gonzalez; Dieter Haas; Stephan Heeb; Alexander Hüttenhofer; Andreas S Richter; Udo Bläsi
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal.
Molecular microbiology 2011;80(4):868-85.
2011: Mathieu REDERSTORFF; Alexander Hüttenhofer
cDNA library generation from ribonucleoprotein particles.
Nature protocols 2011;6(2):166-74.
2010: Anita Kloss-Brandstätter; Georg Schäfer; Gertraud Erhart; Alexander Hüttenhofer; Stefan Coassin; Christof Seifarth; Monika Summerer; Jasmin Bektic; Helmut Klocker; Florian Kronenberg
Somatic mutations throughout the entire mitochondrial genome are associated with elevated PSA levels in prostate cancer patients.
American journal of human genetics 2010;87(6):802-12.
2010: Mathieu REDERSTORFF; Alexander Hüttenhofer
Small non-coding RNAs in disease development and host-pathogen interactions.
Current opinion in molecular therapeutics 2010;12(6):684-94.
2010: Roland Hutzinger; Jan Mrázek; Sonja Vorwerk; Alexander Hüttenhofer
NcRNA-microchip analysis: a novel approach to identify differential expression of noncoding RNAs.
RNA biology 2010;7(5):586-95.
2010: Yuuichi Soeno; Yuji Taya; Taras Stasyk; Lukas A Huber; Takaaki Aoba; Alexander Hüttenhofer
Identification of novel ribonucleo-protein complexes from the brain-specific snoRNA MBII-52.
RNA (New York, N.Y.) 2010;16(7):1293-300.
2010: Mathieu REDERSTORFF; Stephan H Bernhart; Andrea Tanzer; Marek Zywicki; Katrin Perfler; Melanie Lukasser; Ivo L Hofacker; Alexander Hüttenhofer
RNPomics: defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles.
Nucleic acids research 2010;38(10):e113.
2009: Andreas Ploner; Christian Ploner; Melanie Lukasser; Harald Niederegger; Alexander Hüttenhofer
Methodological obstacles in knocking down small noncoding RNAs.
RNA (New York, N.Y.) 2009;15(10):1797-804.
2009: Roland Hutzinger; Regina Feederle; Jan Mrazek; Natalia Schiefermeier; Piotr J Balwierz; Mihaela Zavolan; Norbert Polacek; Henri-Jacques Delecluse; Alexander Hüttenhofer
Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome.
PLoS pathogens 2009;5(8):e1000547.
2009: Constanze Nandy; Jan Mrázek; Heribert Stoiber; Friedrich A Grässer; Alexander Hüttenhofer; Norbert Polacek
Epstein-barr virus-induced expression of a novel human vault RNA.
Journal of molecular biology 2009;388(4):776-84.
2009: Christoph Jöchl; Edmund Loh; Andreas Ploner; Hubertus Haas; Alexander Hüttenhofer
Development-dependent scavenging of nucleic acids in the filamentous fungus Aspergillus fumigatus.
RNA biology 2009;6(2):179-86.
2008: Elisabeth Sonnleitner; Theresa Sorger-Domenigg; Monika J Madej; Sven Findeiss; Jorg Hackermuller; Alexander Hüttenhofer; Peter F Stadler; Udo Bläsi; Isabella Moll
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools.
Microbiology (Reading, England) 2008;154(Pt 10):3175-87.
2008: Christoph Jöchl; Mathieu REDERSTORFF; Jana Hertel; Peter F Stadler; Ivo L Hofacker; Markus Schrettl; Hubertus Haas; Alexander Hüttenhofer
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis.
Nucleic acids research 2008;36(8):2677-89.
2008: Monika J Madej; Moritz Niemann; Alexander Hüttenhofer; H Ulrich Göringer
Identification of novel guide RNAs from the mitochondria of Trypanosoma brucei.
RNA biology 2008;5(2):84-91.
2007: Flore Winter; Sonia Edaye; Alexander Hüttenhofer; Christine Brunel
Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion.
Nucleic acids research 2007;35(20):6953-62.
2007: Jan Mrázek; Simone B Kreutmayer; Friedrich A Grässer; Norbert Polacek; Alexander Hüttenhofer
Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells.
Nucleic acids research 2007;35(10):e73.
2007: Monika J Madej; Juan D Alfonzo; Alexander Hüttenhofer
Small ncRNA transcriptome analysis from kinetoplast mitochondria of Leishmania tarentolae.
Nucleic acids research 2007;35(5):1544-54.
2006: Alexander Hüttenhofer; Peter Schattner
The principles of guiding by RNA: chimeric RNA-protein enzymes.
Nature reviews. Genetics 2006;7(6):475-82.
2006: Alexander Hüttenhofer
RNomics: identification and function of small non-protein-coding RNAs in model organisms.
Cold Spring Harbor symposia on quantitative biology 2006;71():135-40.
2006: Birgit Lung; Anja Zemann; Monika J Madej; Markus Schuelke; Sandra Techritz; Stephanie Ruf; Ralph Bock; Alexander Hüttenhofer
Identification of small non-coding RNAs from mitochondria and chloroplasts.
Nucleic acids research 2006;34(14):3842-52.
2006: Alexander Hüttenhofer; Jörg Vogel
Experimental approaches to identify non-coding RNAs.
Nucleic acids research 2006;34(2):635-46.
2005: Stefan Washietl; Ivo L Hofacker; Melanie Lukasser; Alexander Hüttenhofer; Peter F Stadler
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Nature biotechnology 2005;23(11):1383-90.
2005: Alexander Hüttenhofer; Peter Schattner; Norbert Polacek
Non-coding RNAs: hope or hype?
Trends in genetics : TIG 2005;21(5):289-97.
2005: Dagmar K Willkomm; Jens Minnerup; Alexander Hüttenhofer; Roland K Hartmann
Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog.
Nucleic acids research 2005;33(6):1949-60.
2005: Matthias D Erlacher; Kathrin Lang; Nisha Shankaran; Brigitte Wotzel; Alexander Hüttenhofer; Ronald Micura; Alexander S Mankin; Norbert Polacek
Chemical engineering of the peptidyl transferase center reveals an important role of the 2'-hydroxyl group of A2451.
Nucleic acids research 2005;33(5):1618-27.
2005: Thean Hock Tang; Norbert Polacek; Marek Zywicki; Harald Huber; Kim Brugger; Roger Garrett; Jean-Pierre Bachellerie; Alexander Hüttenhofer
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus.
Molecular microbiology 2005;55(2):469-81.
2004: Alexander Hüttenhofer; Jérôme Cavaillé; Jean-Pierre Bachellerie
Experimental RNomics: a global approach to identifying small nuclear RNAs and their targets in different model organisms.
Methods in molecular biology (Clifton, N.J.) 2004;265():409-28.
2003: Patrice Vitali; Hélène Royo; Hervé Seitz; Jean-Pierre Bachellerie; Alexander Hüttenhofer; Jérôme Cavaillé
Identification of 13 novel human modification guide RNAs.
Nucleic acids research 2003;31(22):6543-51.
2003: Jörg Vogel; Verena Bartels; Thean Hock Tang; Gennady Churakov; Jacoba Slagter-Jager; Alexander Hüttenhofer; E Gerhart H Wagner
RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria.
Nucleic acids research 2003;31(22):6435-43.
2003: Guozhong Yuan; Christian Klämbt; Jean-Pierre Bachellerie; Jürgen Brosius; Alexander Hüttenhofer
RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs.
Nucleic acids research 2003;31(10):2495-507.
2003: Timofey Rozhdestvensky; Thean Hock Tang; Inna V Tchirkova; Jürgen Brosius; Jean-Pierre Bachellerie; Alexander Hüttenhofer
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea.
Nucleic acids research 2003;31(3):869-77.
2003: John W S Brown; Manuel Echeverria; Liang-Hu Qu; Todd M Lowe; Jean-Pierre Bachellerie; Alexander Hüttenhofer; James P Kastenmayer; Pamela J Green; Paul Shaw; Dave F Marshall
Plant snoRNA database.
Nucleic acids research 2003;31(1):432-5.
2002: Claudia Marker; Anja Zemann; Tanja Terhörst; Martin Kiefmann; James P Kastenmayer; Pamela Green; Jean-Pierre Bachellerie; Jürgen Brosius; Alexander Hüttenhofer
Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana.
Current biology : CB 2002;12(23):2002-13.
2002: Alexander Hüttenhofer; Jürgen Brosius; Jean-Pierre Bachellerie
RNomics: identification and function of small, non-messenger RNAs.
Current opinion in chemical biology 2002;6(6):835-43.
2002: Ravi Sondekoppa Muddashetty; Tasneem Khanam; Alexander Kondrashov; Marsha Bundman; Anna Iacoangeli; Joachim Kremerskothen; Kerstin Duning; Angelika Barnekow; Alexander Hüttenhofer; Henri Tiedge; Jürgen Brosius
Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles.
Journal of molecular biology 2002;321(3):433-45.
2002: Jean-Pierre Bachellerie; Jérôme Cavaillé; Alexander Hüttenhofer
The expanding snoRNA world.
Biochimie 2002;84(8):775-90.
2002: Thean Hock Tang; Jean-Pierre Bachellerie; Timofey Rozhdestvensky; Marie-Line Bortolin; Harald Huber; Mario Drungowski; Thorsten Elge; Jürgen Brosius; Alexander Hüttenhofer
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(11):7536-41.
2002: Thean Hock Tang; Timofey Rozhdestvensky; Béatrice Clouet d'Orval; Marie-Line Bortolin; Harald Huber; Bruno Charpentier; Christiane Branlant; Jean-Pierre Bachellerie; Jürgen Brosius; Alexander Hüttenhofer
RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing.
Nucleic acids research 2002;30(4):921-30.
2001: Maren Runte; Alexander Hüttenhofer; Stephanie Gross; Martin Kiefmann; Bernhard Horsthemke; Karin Buiting
The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A.
Human molecular genetics 2001;10(23):2687-700.
2001: Jérôme Cavaillé; Patrice Vitali; Eugenia Basyuk; Alexander Hüttenhofer; Jean-Pierre Bachellerie
A novel brain-specific box C/D small nucleolar RNA processed from tandemly repeated introns of a noncoding RNA gene in rats.
The Journal of biological chemistry 2001;276(28):26374-83.
2001: Alexander Hüttenhofer; Martin Kiefmann; S Meier-Ewert; J O'Brien; Hans Lehrach; Jean-Pierre Bachellerie; Jürgen Brosius
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse.
The EMBO journal 2001;20(11):2943-53.
2001: Timofey Rozhdestvensky; Alexei M Kopylov; Jürgen Brosius; Alexander Hüttenhofer
Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure.
RNA (New York, N.Y.) 2001;7(5):722-30.
2001: J Mergenthaler; Wilhelm Haverkamp; Alexander Hüttenhofer; Boris Skryabin; Ulrich Musshoff; Martin Borggrefe; Erwin-Josef Speckmann; Günter Breithardt; Michael Madeja
Blocking effects of the antiarrhythmic drug propafenone on the HERG potassium channel.
Naunyn-Schmiedeberg's archives of pharmacology 2001;363(4):472-80.
2001: Jutta Wirth; E Back; Alexander Hüttenhofer; Hans Gerd Nothwang; Christina Lich; Stephanie Gross; Corinna Menzel; A Schinzel; P Kioschis; Niels Tommerup; Hans-Hilger Ropers; Bernhard Horsthemke; Karin Buiting
A translocation breakpoint cluster disrupts the newly defined 3' end of the SNURF-SNRPN transcription unit on chromosome 15.
Human molecular genetics 2001;10(3):201-10.
2000: Jérôme Cavaillé; Karin Buiting; Martin Kiefmann; M Lalande; Camilynn I Brannan; Bernhard Horsthemke; Jean-Pierre Bachellerie; Jürgen Brosius; Alexander Hüttenhofer
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14311-6.