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Junko Ishida

Research Profile

Living Beings

Physiology

Gene Expression Regulation, Plant

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Oligonucleotide Array Sequence Analysis

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Chemicals & Drugs

Genes & Molecular Sequences

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Plant Diseases

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Publications

TOP 3
Jong-Myong Kim; Hiroshi Kimura; Akihiro Matsui; Junko Ishida; Taiko Kim To; Motoaki Seki
Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana.
Taiko Kim To; Jong-Myong Kim; Akihiro Matsui; Yukio Kurihara; Taeko Morosawa; Junko Ishida; Maho Tanaka; Takaho Endo; Tetsuji Kakutani; Tetsuro Toyoda; Hiroshi Kimura; Shigeyuki Yokoyama; Kazuo Shinozaki; Motoaki Seki
Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1.
Kei Iida; Shuji Kawaguchi; Norio Kobayashi; Yuko Yoshida; Manabu Ishii; Erimi Harada; Kousuke Hanada; Akihiro Matsui; Masanori Okamoto; Junko Ishida; Maho Tanaka; Taeko Morosawa; Motoaki Seki; Tetsuro Toyoda
ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses.

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All Publications

2012: Jong-Myong Kim; Hiroshi Kimura; Akihiro Matsui; Junko Ishida; Taiko Kim To; Motoaki Seki
Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana.
Plant & cell physiology 2012;53(5):847-56.
2011: Taiko Kim To; Jong-Myong Kim; Akihiro Matsui; Yukio Kurihara; Taeko Morosawa; Junko Ishida; Maho Tanaka; Takaho Endo; Tetsuji Kakutani; Tetsuro Toyoda; Hiroshi Kimura; Shigeyuki Yokoyama; Kazuo Shinozaki; Motoaki Seki
Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1.
PLoS genetics 2011;7(4):e1002055.
2011: Kei Iida; Shuji Kawaguchi; Norio Kobayashi; Yuko Yoshida; Manabu Ishii; Erimi Harada; Kousuke Hanada; Akihiro Matsui; Masanori Okamoto; Junko Ishida; Maho Tanaka; Taeko Morosawa; Motoaki Seki; Tetsuro Toyoda
ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses.
Plant & cell physiology 2011;52(2):254-64.
2010: Akihiro Matsui; Junko Ishida; Taeko Morosawa; Masanori Okamoto; Jong-Myong Kim; Yukio Kurihara; Makiko Kawashima; Maho Tanaka; Taiko Kim To; Kentaro Nakaminami; Eli Kaminuma; Takaho A Endo; Yoshiki Mochizuki; Shuji Kawaguchi; Norio Kobayashi; Kazuo Shinozaki; Tetsuro Toyoda; Motoaki Seki
Arabidopsis tiling array analysis to identify the stress-responsive genes.
Methods in molecular biology (Clifton, N.J.) 2010;639():141-55.
2009: Yukio Kurihara; Eli Kaminuma; Akihiro Matsui; Makiko Kawashima; Maho Tanaka; Taeko Morosawa; Junko Ishida; Yoshiki Mochizuki; Kazuo Shinozaki; Tetsuro Toyoda; Motoaki Seki
Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants.
Plant & cell physiology 2009;50(9):1715-20.
2005: Yoshihiro Narusaka; Mari Narusaka; Motoaki Seki; Junko Ishida; Kazuo Shinozaki; Yoh Nan; Pyoyun Park; Tomonori Shiraishi; Masatomo Kobayashi
Cytological and molecular analyses of non-host resistance of Arabidopsis thaliana to Alternaria alternata.
Molecular plant pathology 2005;6(6):615-27.
2004: Seiji Takahashi; Motoaki Seki; Junko Ishida; Masakazu Satou; Tetsuya Sakurai; Mari Narusaka; Asako Kamiya; Maiko Nakajima; Akiko Enju; Kenji Akiyama; Kazuko Yamaguchi-Shinozaki; Kazuo Shinozaki
Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray.
Plant molecular biology 2004;56(1):29-55.
2004: Yoshihiro Narusaka; Mari Narusaka; Pyoyun Park; Yasuyuki Kubo; Takashi Hirayama; Motoaki Seki; Tomonori Shiraishi; Junko Ishida; Maiko Nakashima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Masatomo Kobayashi; Kazuo Shinozaki
RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum.
Molecular plant-microbe interactions : MPMI 2004;17(7):749-62.
2004: Yoshihiro Narusaka; Mari Narusaka; Motoaki Seki; Taishi Umezawa; Junko Ishida; Maiko Nakajima; Akiko Enju; Kazuo Shinozaki
Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray.
Plant molecular biology 2004;55(3):327-42.
2004: Motoaki Seki; Masakazu Satou; Tetsuya Sakurai; Kenji Akiyama; Kei Iida; Junko Ishida; Maiko Nakajima; Akiko Enju; Mari Narusaka; Miki Fujita; Youko Oono; Ayako Kamei; Kazuko Yamaguchi-Shinozaki; Kazuo Shinozaki
RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions.
Journal of experimental botany 2004;55(395):213-23.
2003: Yoshihiro Narusaka; Mari Narusaka; Motoaki Seki; Miki Fujita; Junko Ishida; Maiko Nakashima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Asako Kamiya; Pyoyun Park; Masatomo Kobayashi; Kazuo Shinozaki
Expression profiles of Arabidopsis phospholipase A IIA gene in response to biotic and abiotic stresses.
Plant & cell physiology 2003;44(11):1246-52.
2003: Motoaki Seki; Kazuo Shinozaki; Junko Ishida; Maiko Nakajima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Kenji Akiyama; Kei Iida; Youko Oono
[Arabidopsis functional genomics using full-length cDNAs].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2003;48(14):1890-8.
2003: Youko Oono; Motoaki Seki; Tokihiko Nanjo; Mari Narusaka; Miki Fujita; Rie Satoh; Masakazu Satou; Tetsuya Sakurai; Junko Ishida; Kenji Akiyama; Kei Iida; Kyonoshin Maruyama; Shinobu Satoh; Kazuko Yamaguchi-Shinozaki; Kazuo Shinozaki
Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray.
The Plant journal : for cell and molecular biology 2003;34(6):868-87.
2003: Yoshihiro Narusaka; Mari Narusaka; Motoaki Seki; Junko Ishida; Maiko Nakashima; Asako Kamiya; Akiko Enju; Tetsuya Sakurai; Masakazu Satoh; Masatomo Kobayashi; Yukio Tosa; Pyoyun Park; Kazuo Shinozaki
The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack.
Plant & cell physiology 2003;44(4):377-87.
2002: Motoaki Seki; Junko Ishida; Mari Narusaka; Miki Fujita; Tokihiko Nanjo; Taishi Umezawa; Asako Kamiya; Maiko Nakajima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Kenji Akiyama; Kazuko Yamaguchi-Shinozaki; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kazuo Shinozaki
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray.
Functional & integrative genomics 2002;2(6):282-91.
2002: Motoaki Seki; Mari Narusaka; Junko Ishida; Tokihiko Nanjo; Miki Fujita; Youko Oono; Asako Kamiya; Maiko Nakajima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Kenji Akiyama; Teruaki Taji; Kazuko Yamaguchi-Shinozaki; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kazuo Shinozaki
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.
The Plant journal : for cell and molecular biology 2002;31(3):279-92.
2002: Motoaki Seki; Mari Narusaka; Asako Kamiya; Junko Ishida; Masakazu Satou; Tetsuya Sakurai; Maiko Nakajima; Akiko Enju; Kenji Akiyama; Youko Oono; Masami Muramatsu; Yoshihide Hayashizaki; Jun Kawai; piero carninci; Masayoshi Itoh; Yoshiyuki Ishii; Takahiro Arakawa; Kazuhiro Shibata; Akira Shinagawa; Kazuo Shinozaki
Functional annotation of a full-length Arabidopsis cDNA collection.
Science (New York, N.Y.) 2002;296(5565):141-5.