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Toshimasa Ishida
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55
Doi, Mitsunobu
53
Tomoo, Koji
35
In, Yasuko
26
Kitamura, Kunihiro
25
Ohishi, Hirofumi
21
Taniguchi, Taizo
17
Minoura, Katsuhiko
12
Morino, Shigenobu
11
Sumida, Miho
10
Sasaki, Masahiro
7
Kamigauchi, Miyoko
7
Maezaki, Naoyoshi
7
Miyagawa, Hiromi
7
Ikeda, Kiyoshi
7
Hasegawa, Hiroshi
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All Publications
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2009: Fujita Yuki; Oe Masako; Tutsumino Tatsuya; Morino Shigenobu; Imataka Hiroaki; Tomoo Koji; Ishida Toshimasa
Domain-dependent interaction of eukaryotic initiation factor eIF4A for binding to middle and C-terminal domains of eIF4G.
Journal of biochemistry 2009;146(3):359-68.
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2009: Sugino Etsuko; Nishiura Chisato; Minoura Katsuhiko; In Yasuko; Sumida Miho; Taniguchi Taizo; Tomoo Koji; Ishida Toshimasa
Three-/four-repeat-dependent aggregation profile of tau microtubule-binding domain clarified by dynamic light scattering analysis.
Biochemical and biophysical research communications 2009;385(2):236-40.
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2009: Okade Hayato; Fujita Yuki; Miyamoto Saori; Tomoo Koji; Muto Shinji; Miyoshi Hiroshi; Natsuaki Tomohide; Rhoads Robert E; Ishida Toshimasa
Turnip mosaic virus genome-linked protein VPg binds C-terminal region of cap-bound initiation factor 4E orthologue without exhibiting host cellular specificity.
Journal of biochemistry 2009;145(3):299-307.
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2008: Mima Masashi; Kawai Chika; Paku Kumsun; Tomoo Koji; Ishida Toshimasa; Sugiyama Shigeru; Matsumura Hiroyoshi; Kitatani Tomoya; Yoshikawa Hiroshi Y; Maki Syou; Adachi Hiroaki; Takano Kazufumi; Murakami Satoshi; Inoue Tsuyoshi; Mori Yusuke; Kita Satomi; Iwamoto Takahiro
Crystallization and preliminary X-ray crystallographic analysis of Ca2+-free primary Ca2+-sensor of Na+/Ca2+ exchanger.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 12):1125-7.
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2008: Mizuno Atsuo; In Yasuko; Fujita Yuki; Abiko Fumi; Miyagawa Hiroo; Kitamura Kunihiro; Tomoo Koji; Ishida Toshimasa
Importance of C-terminal flexible region of 4E-binding protein in binding with eukaryotic initiation factor 4E.
FEBS letters 2008;582(23-24):3439-44.
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2008: Hattori Masaki; Sugino Etsuko; Minoura Katsuhiko; In Yasuko; Sumida Miho; Taniguchi Taizo; Tomoo Koji; Ishida Toshimasa
Different inhibitory response of cyanidin and methylene blue for filament formation of tau microtubule-binding domain.
Biochemical and biophysical research communications 2008;374(1):158-63.
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2008: Tomoo Koji; Mukai Yasuhiro; In Yasuko; Miyagawa Hiroo; Kitamura Kunihiro; Yamano Akihito; Shindo Heisaburo; Ishida Toshimasa
Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin.
Biochimica et biophysica acta 2008;1784(7-8):1059-67.
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2008: Nagata Hiroomi; Nishi Hiroyuki; Kamigauchi Miyoko; Ishida Toshimasa
Guest-dependent conformation of 18-crown-6 tetracarboxylic acid: relation to chiral separation of racemic amino acids.
Chirality 2008;20(7):820-7.
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2008: Okuyama Kayoko; Nishiura Chisato; Mizushima Fumie; Minoura Katsuhiko; Sumida Miho; Taniguchi Taizo; Tomoo Koji; Ishida Toshimasa
Linkage-dependent contribution of repeat peptides to self-aggregation of three- or four-repeat microtubule-binding domains in tau protein.
The FEBS journal 2008;275(7):1529-39.
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2008: Ohishi Hirofumi; Odoko Mamiko; Zhou Da-Yang; Tozuka Yoshitaka; Okabe Nobuo; Nakatani Kazuhiko; Ishida Toshimasa; Grzeskowiak Kazmierz
The crystallographic study of left-handed Z-DNA d(CGCGCG)2 and thermine complexes crystallized at various temperatures and at various concentration of cations.
Biochemical and biophysical research communications 2008;368(2):382-7.
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2008: Ohishi Hirofumi; Odoko Mamiko; Grzeskowiak Kazimierz; Hiyama Yoichi; Tsukamoto Koji; Maezaki Naoyoshi; Ishida Toshimasa; Tanaka Tetsuaki; Okabe Nobuo; Fukuyama Keiichi; Zhou Da-Yang; Nakatani Kazuhiko
Polyamines stabilize left-handed Z-DNA: using X-ray crystallographic analysis, we have found a new type of polyamine (PA) that stabilizes left-handed Z-DNA.
Biochemical and biophysical research communications 2008;366(2):275-80.
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2007: Seike Kiho; Sato Junji; Tomoo Koji; Ishida Toshimasa; Yamano Akihito; Ikenishi Sadao; Miyamoto Katsushiro; Tsujibo Hiroshi
Crystallization and preliminary X-ray crystallographic analysis of BxlE, a xylobiose transporter from Streptomyces thermoviolaceus OPC-520.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 7):560-2.
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2007: Hikosou Rie; Kurabayashi Yasuko; Doumoto Michiko; Hoshitoku Kaoru; Mizushima Fumie; Minoura Katsuhiko; Tomoo Koji; Ishida Toshimasa
Effect of DNA on filament formation of tau microtubule-binding domain: structural dependence of DNA.
Chemical & pharmaceutical bulletin 2007;55(7):1030-3.
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2007: Mizushima Fumie; Minoura Katsuhiko; Tomoo Koji; Sumida Miho; Taniguchi Taizo; Ishida Toshimasa
Marked difference between self-aggregations of first and fourth repeat peptides on tau microtubule-binding domain in acidic solution.
Journal of biochemistry 2007;142(1):49-54.
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2007: Ohishi Hirofumi; Tozuka Yoshitaka; Da-Yang Zhou; Ishida Toshimasa; Nakatani Kazuhiko
The rare crystallographic structure of d(CGCGCG)(2): the natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)(2) at 10 degrees C.
Biochemical and biophysical research communications 2007;358(1):24-8.
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2007: Kamigauchi Miyoko; Kawanishi Kazuko; Ohishi Hirofumi; Ishida Toshimasa
Inclusion effect and structural basis of cyclodextrins for increased extraction of medicinal alkaloids from natural medicines.
Chemical & pharmaceutical bulletin 2007;55(5):729-33.
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2007: Abiko Fumi; Tomoo Koji; Mizuno Atsuo; Morino Shigenobu; Imataka Hiroaki; Ishida Toshimasa
Binding preference of eIF4E for 4E-binding protein isoform and function of eIF4E N-terminal flexible region for interaction, studied by SPR analysis.
Biochemical and biophysical research communications 2007;355(3):667-72.
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2006: Tsukamoto Koji; Ohishi Hirofumi; Maezaki Naoyoshi; Tanaka Tetsuaki; Ishida Toshimasa
Calix[6]arene-based template for X-ray crystallographic analysis of template-assembled synthetic proteins.
Chembiochem : a European journal of chemical biology 2006;7(10):1559-62.
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2006: Watanabe Daiya; Yamamoto Atsushi; Tomoo Koji; Matsumoto Keita; Murata Mitsuo; Kitamura Kunihiro; Ishida Toshimasa
Quantitative evaluation of each catalytic subsite of cathepsin B for inhibitory activity based on inhibitory activity-binding mode relationship of epoxysuccinyl inhibitors by X-ray crystal structure analyses of complexes.
Journal of molecular biology 2006;362(5):979-93.
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2006: Tsukamoto Koji; Ohishi Hirofumi; Hiyama Yoichi; Maezaki Naoyoshi; Tanaka Tetsuaki; Ishida Toshimasa
Self-assembled octameric cage constructed by the potassium salt of p-tert-butylcalix[6]arene p-bromophenylalanine derivative in the solid state.
Chemical communications (Cambridge, England) 2006;(34):3606-8.
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2006: Ohishi Hirofumi; Tsukamoto Koji; Hiyama Yoichi; Maezaki Naoyoshi; Tanaka Tetsuaki; Ishida Toshimasa
Amine free crystal structure: the crystal structure of d(CGCGCG)2 and methylamine complex crystal.
Biochemical and biophysical research communications 2006;348(3):794-8.
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2006: Tomoo Koji; Abiko Fumi; Miyagawa Hiroo; Kitamura Kunihiro; Ishida Toshimasa
Effect of N-terminal region of eIF4E and Ser65-phosphorylation of 4E-BP1 on interaction between eIF4E and 4E-BP1 fragment peptide.
Journal of biochemistry 2006;140(2):237-46.
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2006: Mizushima Fumie; Minoura Katsuhiko; Tomoo Koji; Sumida Miho; Taniguchi Taizo; Ishida Toshimasa
Fluorescence-coupled CD conformational monitoring of filament formation of tau microtubule-binding repeat domain.
Biochemical and biophysical research communications 2006;343(3):712-8.
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2006: Nagata Hiroomi; Nishi Hiroyuki; Kamigauchi Miyoko; Ishida Toshimasa
Structural scaffold of 18-crown-6 tetracarboxylic Acid for optical resolution of chiral amino acid: x-ray crystal analyses of complexes of D- and L-isomers of serine and glutamic acid.
Chemical & pharmaceutical bulletin 2006;54(4):452-7.
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2006: Ohishi Hirofumi; Ishida Toshimasa; Tsukamoto Koji; Maezaki Naoyoshi; Tanaka Tetsuaki
A crystal structure study when crystallized only in d(CG)3 + methylamine and a d(CG)3 + metal ion.
Nucleic acids symposium series (2004) 2006;(50):41-2.
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2005: Tomoo Koji; Matsushita Yasunori; Fujisaki Hiroyuki; Abiko Fumi; Shen Xu; Taniguchi Taizo; Miyagawa Hiroo; Kitamura Kunihiro; Miura Kin-ichiro; Ishida Toshimasa
Structural basis for mRNA Cap-Binding regulation of eukaryotic initiation factor 4E by 4E-binding protein, studied by spectroscopic, X-ray crystal structural, and molecular dynamics simulation methods.
Biochimica et biophysica acta 2005;1753(2):191-208.
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2005: Tomoo Koji; Yao Tian-Ming; Minoura Katsuhiko; Hiraoka Shuko; Sumida Miho; Taniguchi Taizo; Ishida Toshimasa
Possible role of each repeat structure of the microtubule-binding domain of the tau protein in in vitro aggregation.
Journal of biochemistry 2005;138(4):413-23.
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2005: In Yasuko; Minoura Katsuhiko; Tomoo Koji; Sasaki Yusuke; Lazarus Lawrence H; Okada Yoshio; Ishida Toshimasa
Structural function of C-terminal amidation of endomorphin. Conformational comparison of mu-selective endomorphin-2 with its C-terminal free acid, studied by 1H-NMR spectroscopy, molecular calculation, and X-ray crystallography.
The FEBS journal 2005;272(19):5079-97.
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2005: Tokimasa Mari; Minoura Katsuhiko; Hiraoka Shuko; Tomoo Koji; Sumida Miho; Taniguchi Taizo; Ishida Toshimasa
Importance of local structures of second and third repeat fragments of microtubule-binding domain for tau filament formation.
FEBS letters 2005;579(17):3481-6.
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2005: Kamigauchi Miyoko; Noda Yuko; Nishijo Jujiro; Iwasaki Katsuhide; Tobetto Kenji; In Yasuko; Tomoo Koji; Ishida Toshimasa
Cell adhesion inhibitory activity of (d)-corynoline, a hexahydrobenzo[c]phenanthridine-type alkaloid, and its structure-activity relationship, studied by X-ray crystal structure analysis and molecular docking study.
Bioorganic & medicinal chemistry 2005;13(5):1867-72.
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2005: Taniguchi Taizo; Sumida Miho; Hiraoka Shuko; Tomoo Koji; Kakehi Tomoko; Minoura Katsuhiko; Sugiyama Shigeru; Inaka Koji; Ishida Toshimasa; Saito Naoaki; Tanaka Chikako
Effects of different anti-tau antibodies on tau fibrillogenesis: RTA-1 and RTA-2 counteract tau aggregation.
FEBS letters 2005;579(6):1399-404.
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2005: Minoura Katsuhiko; Mizushima Fumie; Tokimasa Mari; Hiraoka Shuko; Tomoo Koji; Sumida Miho; Taniguchi Taizo; Ishida Toshimasa
Structural evaluation of conformational transition state responsible for self-assembly of tau microtubule-binding domain.
Biochemical and biophysical research communications 2005;327(4):1100-4.
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2005: Tsukamoto Koji; Odoko Mamiko; Ohishi Hirofumi; Hiyama Yoichi; Maezaki Naoyoshi; Okabe Nobuo; Tanaka Tetsuaki; Ishida Toshimasa
Stabilization of the left-handed Z-DNA with monoamines and polyamines.
Nucleic acids symposium series (2004) 2005;(49):251-2.
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2005: Ohishi Hirofumi; Tukamoto Koji; Odoko Mamiko; Grzeskowiak Kazimierz; Maezaki Naoyoshi; Okabe Nobuo; Tanaka Tetsuaki; Ishida Toshimasa
The development of crystallization and X-ray crystallography method of long stem DNA.
Nucleic acids symposium series (2004) 2005;(49):67-8.
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2004: Nagata Hiroomi; Nishi Hiroyuki; Kamigauchi Miyoko; Ishida Toshimasa
Structural scaffold of 18-crown-6 tetracarboxylic acid for optical resolution of chiral amino acid: X-ray crystal analyses and energy calculations of complexes of D- and L-isomers of tyrosine, isoleucine, methionine and phenylglycine.
Organic & biomolecular chemistry 2004;2(23):3470-5.
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2004: In Yasuko; Tomoo Koji; Ishida Toshimasa; Sakamoto Yasuhiko
Crystal and molecular structure of an (S)-(+)-enantiomer of modafinil, a novel wake-promoting agent.
Chemical & pharmaceutical bulletin 2004;52(10):1186-9.
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2004: Doi Mitsunobu; Kimura Tooru; Ishida Toshimasa; Kiso Yoshiaki
Rigid backbone moiety of KNI-272, a highly selective HIV protease inhibitor: methanol, acetone and dimethylsulfoxide solvated forms of 3-[3-benzyl-2-hydroxy-9-(isoquinolin-5-yloxy)-6-methylsulfanylmethyl-5,8-dioxo-4,7-diazanonanoyl]-N-tert-butyl-1,3-thiazolidine-4-carboxamide.
Acta crystallographica. Section B, Structural science 2004;60(Pt 4):433-7.
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2004: Hiraoka Shuko; Yao Tian-Ming; Minoura Katsuhiko; Tomoo Koji; Sumida Miho; Taniguchi Taizo; Ishida Toshimasa
Conformational transition state is responsible for assembly of microtubule-binding domain of tau protein.
Biochemical and biophysical research communications 2004;315(3):659-63.
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2004: Minoura Katsuhiko; Yao Tian-Ming; Tomoo Koji; Sumida Miho; Sasaki Masahiro; Taniguchi Taizo; Ishida Toshimasa
Different associational and conformational behaviors between the second and third repeat fragments in the tau microtubule-binding domain.
European journal of biochemistry / FEBS 2004;271(3):545-52.
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2004: Grzeskowiak Kazimierz; Sawaya Michael R; Ohishi Hirofumi; Tomoo Koji; Ishida Toshimasa
Function of AGCA tetrads in (CAG)n repeats.
Nucleic acids symposium series (2004) 2004;(48):291-2.
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2004: Ohishi Hirofumi; Ishida Toshimasa; Suzuki Kenji; Grzeskowiak Kazimierz; Odoko Mamiko; Okabe Nobuo
The X-ray crystallographic study of the conformation of Z-DNA which bound to polyamine for the minor groove at room temperature and low temperature.
Nucleic acids symposium series (2004) 2004;(48):255-6.
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2003: In Yasuko; Kishima Shouitirou; Minoura Katsuhiko; Nose Takeru; Shimohigashi Yasuyuki; Ishida Toshimasa
Aggregation feature of fluorine-substituted benzene rings and intermolecular C-H.F interaction: crystal structure analyses of mono- and trifluoro-L-phenylalanines.
Chemical & pharmaceutical bulletin 2003;51(11):1258-63.
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2003: Yao Tian-Ming; Tomoo Koji; Ishida Toshimasa; Hasegawa Hiroshi; Sasaki Masahiro; Taniguchi Taizo
Aggregation analysis of the microtubule binding domain in tau protein by spectroscopic methods.
Journal of biochemistry 2003;134(1):91-9.
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2003: In Yasuko; Ohishi Hirofumi; Ishida Toshimasa; Igarashi Yasuhiro
Concerted interaction between conjugated double bond CHs and multiple OHs in polyene macrolide antibiotic chainin: weak =C-H...O interactions responsible for intrinsic molecular assembly.
Chemical communications (Cambridge, England) 2003;(14):1692-3.
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2003: Tomoo Koji; Shen Xu; Okabe Koumei; Nozoe Yoshiaki; Fukuhara Shoichi; Morino Shigenobu; Sasaki Masahiro; Taniguchi Taizo; Miyagawa Hiroo; Kitamura Kunihiro; Miura Kin-ichiro; Ishida Toshimasa
Structural features of human initiation factor 4E, studied by X-ray crystal analyses and molecular dynamics simulations.
Journal of molecular biology 2003;328(2):365-83.
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2002: Asano A; Minoura K; Yamada T; Numata A; Ishida T; Katsuya Y; Mezaki Y; Sasaki M; Taniguchi T; Nakai M; Hasegawa H; Terashima A; Doi M
Effect of asymmetric modification on the conformation of ascidiacyclamide analogs.
The journal of peptide research : official journal of the American Peptide Society 2002;60(1):10-22.
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2002: Minoura Katsuhiko; Tomoo Koji; Ishida Toshimasa; Hasegawa Hiroshi; Sasaki Masahiro; Taniguchi Taizo
Amphipathic helical behavior of the third repeat fragment in the tau microtubule-binding domain, studied by (1)H NMR spectroscopy.
Biochemical and biophysical research communications 2002;294(2):210-4.
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2002: Yamamoto Atsushi; Tomoo Koji; Matsugi Ken-ichi; Hara Tadaoki; In Yasuko; Murata Mitsuo; Kitamura Kunihiro; Ishida Toshimasa
Structural basis for development of cathepsin B-specific noncovalent-type inhibitor: crystal structure of cathepsin B-E64c complex.
Biochimica et biophysica acta 2002;1597(2):244-51.
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2002: In Yasuko; Ono Hiroto; Ishida Toshimasa
Structural studies on C-amidated amino acids and peptides: function of amide group in molecular association in crystal structures of Val-Gly-NH2, Ser-Phe-NH2, Gly-Tyr-NH2 and Pro-Tyr-NH2 hydrochloride salts.
Chemical & pharmaceutical bulletin 2002;50(5):571-7.
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2002: Tomoo Koji; Shen Xu; Okabe Koumei; Nozoe Yoshiaki; Fukuhara Shoichi; Morino Shigenobu; Ishida Toshimasa; Taniguchi Taizo; Hasegawa Hiroshi; Terashima Akira; Sasaki Masahiro; Katsuya Yoshio; Kitamura Kunihiro; Miyoshi Hiroshi; Ishikawa Masahide; Miura Kin-ichiro
Crystal structures of 7-methylguanosine 5'-triphosphate (m(7)GTP)- and P(1)-7-methylguanosine-P(3)-adenosine-5',5'-triphosphate (m(7)GpppA)-bound human full-length eukaryotic initiation factor 4E: biological importance of the C-terminal flexible region.
The Biochemical journal 2002;362(Pt 3):539-44.
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2002: Ohishi Hirofumi; Suzuki Kenji; Grzeskowiak Kazimierz; Fukuyama Keiichi; Ishida Toshimasa
The X-ray crystallographic study of long chain left handed Z-DNA and polyamine complex and structural chemistry study of effection by polyamine for the Z-DNA.
Nucleic acids research. Supplement (2001) 2002;(2):53-4.
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2001: In Y; Minoura K; Ohishi H; Minakata H; Kamigauchi M; Sugiura M; Ishida T
Conformational comparison of mu-selective endomorphin-2 with its C-terminal free acid in DMSO solution, by 1H NMR spectroscopy and molecular modeling calculation.
The journal of peptide research : official journal of the American Peptide Society 2001;58(5):399-412.
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2001: Doi M; Ishida T; Katsuya Y; Sasaki M; Taniguchi T; Hasegawa H; Mimoto T; Kiso Y
KNI-272, a highly selective and potent peptidic HIV protease inhibitor.
Acta crystallographica. Section C, Crystal structure communications 2001;57(Pt 11):1333-5.
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2001: Shen X; Tomoo K; Uchiyama S; Kobayashi Y; Ishida T
Structural and thermodynamic behavior of eukaryotic initiation factor 4E in supramolecular formation with 4E-binding protein 1 and mRNA cap analogue, studied by spectroscopic methods.
Chemical & pharmaceutical bulletin 2001;49(10):1299-303.
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2001: Tanaka R; Tsujimoto K; In Y; Ishida T; Matsunaga S; Terada Y
Structure and stereochemistry of epoxyserratanes from the cuticle of Piceajezoensis var. jezoensis.
Journal of natural products 2001;64(8):1044-7.
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2001: Doi M; Asano A; Ishida T; Katsuya Y; Mezaki Y; Sasaki M; Terashima A; Taniguchi T; Hasegawa H; Shiono M
Caged and clustered structures of endothelin inhibitor BQ123, cyclo(-D-Trp-D-Asp--Pro-D-Val-Leu-)-Na+, forming five and six coordination bonds between sodium ions and peptides.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 5):628-34.
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2001: Tomoo K; Satoh K; Tsuda Y; Wanaka K; Okamoto S; Hijikata-Okunomiya A; Okada Y; Ishida T
Binding diversity of a noncovalent-type low-molecular-weight serine protease inhibitor and function of a catalytic water molecule: X-ray crystal structure of PKSI-527--inhibited trypsin.
Journal of biochemistry 2001;129(3):455-60.
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2001: Asano A; Doi M; Kobayashi K; Arimoto M; Ishida T; Katsuya Y; Mezaki Y; Hasegawa H; Nakai M; Sasaki M; Taniguchi T; Terashima A
Effects of amino acids and chirality for molecular folding of desoxazoline-ascidiacyclamide derivatives: X-ray crystal structures of four cyclic octapeptides including unusual amino acids, cyclo(-Ile-aThr-D-Val-Thz-)(2), cyclo(-Ala-aThr-D-Val-Thz-Ile-aThr-D-Val-Thz-), cyclo(-Val-aThr-D-Val-Thz-Ile-aThr-D-Val-Thz-), and cyclo(-Ile-aThr-Val-Thz-Ile-aThr-D-Val-Thz-).
Biopolymers 2001;58(3):295-304.
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2001: In Y; Fujii M; Sasada Y; Ishida T
Structural studies on C-amidated amino acids and peptides: structures of hydrochloride salts of C-amidated Ile, Val, Thr, Ser, Met, Trp, Gln and Arg, and comparison with their C-unamidated counterparts.
Acta crystallographica. Section B, Structural science 2001;57(Pt 1):72-81.
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2001: Hirata K; Araya J; Nakaike S; Kitamura K; Ishida T
Side chain-dependent binding of antitumor indoloquinoxaline derivatives to DNA: comparative spectroscopic and viscometric measurements.
Chemical & pharmaceutical bulletin 2001;49(1):44-8.
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2000: Doi M; Ishida T; Kobayashi M; Katsuya Y; Mezaki Y; Sasaki M; Terashima A; Taniguchi T; Tanaka C
Amphipathic structure of theonellapeptolide-Id, a hydrophobic tridecapeptide lactone from the Okinawa marine sponge Theonella swinhoei.
Biopolymers 2000;54(1):27-34.
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2000: Yamamoto A; Tomoo K; Miyagawa H; Takaoka Y; Sumiya S; Kitamura K; Ishida T
Molecular dynamics simulations of bovine cathepsin B and its complex with CA074.
Chemical & pharmaceutical bulletin 2000;48(4):480-5.
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2000: Yamamoto A; Tomoo K; Hara T; Murata M; Kitamura K; Ishida T
Substrate specificity of bovine cathepsin B and its inhibition by CA074, based on crystal structure refinement of the complex.
Journal of biochemistry 2000;127(4):635-43.
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2000: In Y; Tani S; Ishida T
Structural studies of C-amidated amino acids and peptides: crystal structures of Z-Gly-Phe-NH2, Tyr-Lys-NH2, and Asp-Phe-NH2.
Chemical & pharmaceutical bulletin 2000;48(3):374-81.
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2000: Youtani T; Tomoo K; Ishida T; Miyoshi H; Miura K
Regulation of human eIF4E by 4E-BP1: binding analysis using surface plasmon resonance.
IUBMB life 2000;49(1):27-31.
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1999: Ogino T; Kaji T; Kawabata M; Satoh K; Tomoo K; Ishida T; Yamazaki H; Ishidoh K; Kominami E
Function of the propeptide region in recombinant expression of active procathepsin L in Escherichia coli.
Journal of biochemistry 1999;126(1):78-83.
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1999: In Y; Ishida T; Takesako K
Unique molecular conformation of aureobasidin A, a highly amide N-methylated cyclic depsipeptide with potent antifungal activity: X-ray crystal structure and molecular modeling studies.
The journal of peptide research : official journal of the American Peptide Society 1999;53(5):492-500.
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1999: Doi M; Shinozaki F; In Y; Ishida T; Yamamoto D; Kamigauchi M; Sugiura M; Hamada Y; Kohda K; Shioiri T
Conformational change of ascidiacyclamide caused by asymmetric modification for an isoleucine residue: structural analyses of [Gly], [Leu], and [Phe]ascidiacyclamides by x-ray diffraction and NMR spectroscopy.
Biopolymers 1999;49(6):459-69.
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1998: Shibata S; Morino S; Tomoo K; In Y; Ishida T
Effect of mRNA cap structure on eIF-4E phosphorylation and cap binding analyses using Ser209-mutated eIF-4Es.
Biochemical and biophysical research communications 1998;247(2):213-6.
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1998: Ishida T; Mihara Y; Hama Y; Hanatani A; Tarui M; Doi M; Nakaike S; Kitamura K
Spectroscopic investigation on the interaction of NCA0424, a potent antitumor indoloquinoxaline derivative, with DNA.
Chemical & pharmaceutical bulletin 1998;46(5):739-43.
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1998: Nishi N; Morino S; Tomoo K; Youtani T; Ishida T
Expression of a synthetic gene for initiation factor 4E-binding protein 1 in Escherichia coli and its interaction with eIF-4E and eIF-4E x m7GTP complex.
Journal of biochemistry 1998;123(1):157-61.
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1997: Mihara Y; Doi M; Inohara T; Kawamura M; Hamanaka N; Ishida T
Interaction of mutagenic tryptophan pyrolysate with d(CGATCG)2: intercalation model based on NMR experiments.
Biochemical and biophysical research communications 1997;240(3):803-6.
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1997: Tomoo K; Yamane A; Ishida T; Fujii S; Ikeda K; Iwama S; Katsumura S; Sumiya S; Miyagawa H; Kitamura K
X-ray crystal structure determination and molecular dynamics simulation of prophospholipase A2 inhibited by amide-type substrate analogues.
Biochimica et biophysica acta 1997;1340(2):178-86.
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1997: Yamamoto A; Hara T; Tomoo K; Ishida T; Fujii T; Hata Y; Murata M; Kitamura K
Binding mode of CA074, a specific irreversible inhibitor, to bovine cathepsin B as determined by X-ray crystal analysis of the complex.
Journal of biochemistry 1997;121(5):974-7.
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1996: Teraoka Y; Morino S; Tomoo K; Ishida T
Mutation of the cysteine residues in human initiation factor 4E: effects on mRNA cap binding ability.
Biochemical and biophysical research communications 1996;228(3):704-8.
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1996: Morino S; Hazama H; Ozaki M; Teraoka Y; Shibata S; Doi M; Ueda H; Ishida T; Uesugi S
Analysis of the mRNA cap-binding ability of human eukaryotic initiation factor-4E by use of recombinant wild-type and mutant forms.
European journal of biochemistry / FEBS 1996;239(3):597-601.
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1996: Doi M; Ishida T; Polese A; Formaggio F; Crisma M; Toniolo C; Broxterman Q B; Kamphuis J
Structural versatility of peptides from C alpha, alpha-disubstituted glycines: crystal-state conformational analysis of peptides from C alpha-methylhomophenylalanine, (alpha Me) Hph.
International journal of peptide and protein research 1996;47(6):491-7.
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1996: Morino S; Tomoo K; Nishi N; Okabe K; Doi M; Ishida T; Kitamura K
Crystallization and preliminary X-ray diffraction study of recombinant human eukaryotic initiation factor-4E.
Journal of biochemistry 1996;119(2):224-5.
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1995: Inohara T; Tarui M; Mihara Y; Doi M; Ishida T
Binding specificity of mutagenic tryptophan pyrolysates for DNA conformation: spectroscopic and viscometric studies.
Chemical & pharmaceutical bulletin 1995;43(10):1607-13.
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1995: Doi M; Ishida T; Polese A; Formaggio F; Crisma M; Toniolo C; Broxterman Q B; Kamphuis J
(S)-C alpha-ethyl, C alpha-benzylglycine [(S)-(alpha Et)Phe] peptides fold in left-handed helical structures.
Peptide research 1995;8(5):294-7.
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1995: Kawai H; Tarui M; Doi M; Ishida T
Enhancement of aromatic amino acid-nucleic acid base stacking interaction by metal coordination to base: fluorescence study on a tryptophan-Pt(II)-guanine ternary complex.
FEBS letters 1995;370(3):193-6.
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1995: Nakamura M; Tomoo K; Ishida T; Taguchi H; Tsuda Y; Okada Y; Okunomiya A; Wanaka K; Okamoto S
Design of noncovalent trypsin inhibitor based on the X-ray crystal structure of the complex.
Biochemical and biophysical research communications 1995;213(2):583-7.
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1995: Segawa M; Ohno Y; Doi M; Ishida T; Iwashita T
Solution conformation of mu-selective dermorphin and delta-selective deltorphin-I in phospholipid micelles, studied by NMR spectroscopy and molecular dynamics simulations.
International journal of peptide and protein research 1995;46(1):37-46.
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1995: Morino S; Ueda H; Doi M; Ishida T
[Gene expression of human eukaryotic initiation factor-4E for protein synthesis and study of its recognition mechanism of mRNA cap structure]
Yakugaku zasshi : Journal of the Pharmaceutical Society of Japan 1995;115(6):401-19.
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1995: Morino S; Teraoka Y; Doi M; Ishida T; Ueda H; Uesugi S
Soluble expression of a synthetic gene for human translation initiation factor 4E in Escherichia coli.
Biological & pharmaceutical bulletin 1995;18(2):372-6.
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1995: Doi M; Ishibe A; Shinozaki H; Murata T; Inoue M; Yasuda M; Ishida T
Conserved delta-activity in reverse enantiomeric opioid peptide.
Life sciences 1995;56(19):1557-62.
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1994: In Y; Doi M; Inoue M; Ishida T; Hamada Y; Shioiri T
Structure of ascidiacyclamide as the ethanol water solvate, a cytotoxic cyclic peptide from Ascidian.
Acta crystallographica. Section C, Crystal structure communications 1994;50 ( Pt 12)():2015-7.
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1994: Doi M; In Y; Inoue M; Ishida T
Characteristic molecular packing in the crystal structure of tert-butoxycarbonyl-L-phenylalanyl-L-methionine methyl ester.
International journal of peptide and protein research 1994;44(6):532-8.
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1994: Tarui M; Doi M; Ishida T; Inoue M; Nakaike S; Kitamura K
DNA-binding characterization of a novel anti-tumour benzo[a]phenazine derivative NC-182: spectroscopic and viscometric studies.
The Biochemical journal 1994;304 ( Pt 1)():271-9.
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1994: Morino S; Yasui M; Doi M; Inoue M; Ishida T; Ueda H; Uesugi S
Direct expression of a synthetic gene in Escherichia coli: purification and physicochemical properties of human initiation factor 4E.
Journal of biochemistry 1994;116(3):687-93.
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1994: Segawa M; Ohno Y; Doi M; Inoue M; Ishida T; Iwashita T
Comparative conformational analyses of mu-selective dermorphin and delta-selective deltorphin-II in aqueous solution by 1H-NMR spectroscopy.
International journal of peptide and protein research 1994;44(3):295-304.
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1994: Tomoo K; Ohishi H; Ishida T; Inoue M; Ikeda K; Sumiya S; Kitamura K
X-ray crystal structure and molecular dynamics simulation of bovine pancreas phospholipase A2-n-dodecylphosphorylcholine complex.
Proteins 1994;19(4):330-9.
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1994: Doi M; Ishibe A; Shinozaki H; Urata H; Inoue M; Ishida T
Conserved and novel structural characteristics of enantiomorphic Leu-enkephalin. X-ray crystal analysis of Leu-enkephalin enantiomer, L-Tyr-Gly-Gly-L-Phe-L-Leu and D-Tyr-Gly-Gly-D-Phe-D-Leu.
International journal of peptide and protein research 1994;43(4):325-31.
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1994: In Y; Doi M; Inoue M; Ishida T; Hamada Y; Shioiri T
Patellamide A, a cytotoxic cyclic peptide from the ascidian Lissoclinum patella.
Acta crystallographica. Section C, Crystal structure communications 1994;50 ( Pt 3)():432-4.
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1994: Ishida T; Toda Y; Tarui M; Doi M; Inoue M
Recognition of a nucleic acid base by tryptophan-containing peptides: spectroscopic comparison of the interaction of Trp-Gly-Gly-Glu and Trp-Gly-Gly-Gln with 7-methylguanine base.
Chemical & pharmaceutical bulletin 1994;42(3):674-6.
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1993: Ishida T; Tarui M; In Y; Ogiyama M; Doi M; Inoue M
Cooperative face-to-face and edge-to-face aromatic interactions of tryptophan indole ring with N7-quarternized guanine and neutral cytosine bases.
FEBS letters 1993;333(3):214-6.
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1993: In Y; Doi M; Inoue M; Ishida T; Hamada Y; Shioiri T
Molecular conformation of patellamide A, a cytotoxic cyclic peptide from the ascidian Lissoclinum patella, by X-ray crystal analysis.
Chemical & pharmaceutical bulletin 1993;41(10):1686-90.
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1993: Ohishi H; Fujii S; Tomoo K; Ishida T; Ikeda K; Tanabe K; Kitamura K
Molecular dynamics simulation of 1,2-dilauroyl-L-phosphatidylethanolamine binding to phospholipase A2: an attempt to explain the selective hydrolysis of substrate fatty acid ester at position 2.
Journal of biochemistry 1993;114(2):210-4.
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1993: Doi M; In Y; Tanaka M; Inoue M; Ishida T
Structure of Boc-Phe-D-Leu-Thr-OMe.
Acta crystallographica. Section C, Crystal structure communications 1993;49 ( Pt 8)():1530-2.
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1993: Inohara T; Tarui M; Doi M; Inoue M; Ishida T
Interaction of mutagenic tryptophan pyrolysate with DNA. CD spectral study on the binding specificity.
FEBS letters 1993;324(3):301-4.
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1993: Kitagawa I; Minagawa K; Zhang R S; Hori K; Doi M; Inoue M; Ishida T; Kimura M; Uji T; Shibuya H
Dehatrine, an antimalarial bisbenzylisoquinoline alkaloid from the Indonesian medicinal plant Beilschmiedia madang, isolated as a mixture of two rotational isomers.
Chemical & pharmaceutical bulletin 1993;41(5):997-9.
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1993: Tomoo K; Fujii S; Ishida T; Inoue M; Ikeda K; Samejima Y; Iwama S; Katsumura S
Crystallization and preliminary X-ray study of Agkistrodon halys blomhoffii phospholipase A2 complexed with a specific inhibitor.
Journal of biochemistry 1993;113(4):411-2.
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1993: Kafuku Y; Ohnishi J; Doi M; Inoue M; Ishida T
Recognition of nucleic acid base by tryptophan-containing peptides: spectroscopic study on interaction of N-acetylTrp-(Gly)m-Asp-(Gly)n-TrpNHCH3 (m = 0-2, n = 0-2) with guanine base.
Chemical & pharmaceutical bulletin 1993;41(2):231-4.
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1993: Ohno Y; Segawa M; Ohishi H; Doi M; Kitamura K; Ishida T; Inoue M; Iwashita T
Conformation of deltorphin-II in membrane environment studied by two-dimensional NMR spectroscopy and molecular dynamics calculations.
European journal of biochemistry / FEBS 1993;212(1):185-91.
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1992: Yamamoto A; Tomoo K; Doi M; Ohishi H; Inoue M; Ishida T; Yamamoto D; Tsuboi S; Okamoto H; Okada Y
Crystal structure of papain-succinyl-Gln-Val-Val-Ala-Ala-p-nitroanilide complex at 1.7-A resolution: noncovalent binding mode of a common sequence of endogenous thiol protease inhibitors.
Biochemistry 1992;31(46):11305-9.
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1992: Kim M J; Yamamoto D; Matsumoto K; Inoue M; Ishida T; Mizuno H; Sumiya S; Kitamura K
Crystal structure of papain-E64-c complex. Binding diversity of E64-c to papain S2 and S3 subsites.
The Biochemical journal 1992;287 ( Pt 3)():797-803.
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1992: Yamamoto A; Kaji T; Tomoo K; Ishida T; Inoue M; Murata M; Kitamura K
Crystallization and preliminary X-ray study of the cathepsin B complexed with CA074, a selective inhibitor.
Journal of molecular biology 1992;227(3):942-4.
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1992: Tomoo K; Ohishi H; Doi M; Ishida T; Inoue M; Ikeda K; Mizuno H
Interaction mode of n-dodecylphosphorylcholine, a substrate analogue, with bovine pancreas phospholipase A2 as determined by X-ray crystal analysis.
Biochemical and biophysical research communications 1992;187(2):821-7.
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1992: Ishida T; In Y; Inoue M; Yasuda-Kamatani Y; Minakata H; Iwashita T; Nomoto K
Effect of the D-Phe2 residue on molecular conformation of an endogenous neuropeptide achatin-I. Comparison of X-ray crystal structures of achatin-I (H-Gly-D-Phe-Ala-Asp-OH) and achatin-II (H-Gly-Phe-Ala-Asp-OH).
FEBS letters 1992;307(3):253-6.
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1992: Nomoto K; Takemoto T; Maeda M; In Y; Doi M; Inoue M; Ishida T
Conformational feature of neuroactive domoic acid: X-ray structural comparison with isodomoic acid A and alpha-kainic acid.
Biochemical and biophysical research communications 1992;187(1):325-31.
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1992: Tomoo K; Ohishi H; Doi M; Ishida T; Inoue M; Ikeda K; Hata Y; Samejima Y
Structure of acidic phospholipase A2 for the venom of Agkistrodon halys blomhoffii at 2.8 A resolution.
Biochemical and biophysical research communications 1992;184(1):137-43.
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1992: Tarui M; Furumura H; Kafuku Y; Ishida T; Inoue M
Mutual assistance of hydrogen-bond pairing and aromatic stacking interactions for molecular recognition: spectroscopic study on the interaction of guanine base with cytosine and tryptophan molecules.
Biochemical and biophysical research communications 1992;183(2):577-83.
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1992: Ishida T; In Y; Doi M; Inoue M; Yasuda-Kamatani Y; Minakata H; Iwashita T; Nomoto K
Crystal structure and molecular conformation of achatin-I (H-Gly-D-Phe-Ala-Asp-OH), an endogenous neuropeptide containing a D-amino acid residue.
International journal of peptide and protein research 1992;39(3):258-64.
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1992: Ishida T; In Y; Doi M; Inoue M; Hamada Y; Shioiri T
Molecular conformation of ascidiacyclamide, a cytotoxic cyclic peptide from Ascidian: X-ray analyses of its free form and solvate crystals.
Biopolymers 1992;32(2):131-43.
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1991: Ueda H; Shoku Y; Hayashi N; Mitsunaga J; In Y; Doi M; Inoue M; Ishida T
X-ray crystallographic conformational study of 5'-O-[N-(L-alanyl)-sulfamoyl]adenosine, a substrate analogue for alanyl-tRNA synthetase.
Biochimica et biophysica acta 1991;1080(2):126-34.
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1991: Ueda H; Iyo H; Doi M; Inoue M; Ishida T
Cooperative stacking and hydrogen bond pairing interactions of fragment peptide in cap binding protein with mRNA cap structure.
Biochimica et biophysica acta 1991;1075(2):181-6.
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1991: Kafuku Y; Matsui Y; Ohtani J; Usami Y; Ueda H; Doi M; Inoue M; Ishida T
Spectroscopic study on interaction of nucleic acid base with tryptophan-containing tripeptides: acetyl-Trp-X-Trp-NHCH3 (X = Gly, Asn, Asp, Gln and Glu).
Chemical & pharmaceutical bulletin 1991;39(10):2487-90.
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1991: Ishida T; In Y; Tanaka C; Inoue M
Structural study of aldose reductase inhibitors. Ten oxazolecarbamate derivatives.
Acta crystallographica. Section B, Structural science 1991;47 ( Pt 5)():806-13.
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1991: Yamamoto D; Matsumoto K; Ohishi H; Ishida T; Inoue M; Kitamura K; Mizuno H
Refined x-ray structure of papain.E-64-c complex at 2.1-A resolution.
The Journal of biological chemistry 1991;266(22):14771-7.
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1991: Ueda H; Maruyama H; Doi M; Inoue M; Ishida T; Morioka H; Tanaka T; Nishikawa S; Uesugi S
Expression of a synthetic gene for human cap binding protein (human IF-4E) in Escherichia coli and fluorescence studies on interaction with mRNA cap structure analogues.
Journal of biochemistry 1991;109(6):882-9.
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1991: Ueda H; Iyo H; Doi M; Inoue M; Ishida T; Morioka H; Tanaka T; Nishikawa S; Uesugi S
Combination of Trp and Glu residues for recognition of mRNA cap structure. Analysis of m7G base recognition site of human cap binding protein (IF-4E) by site-directed mutagenesis.
FEBS letters 1991;280(2):207-10.
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1990: Kamatani Y; Minakata H; Iwashita T; Nomoto K; In Y; Doi M; Ishida T
Molecular conformation of achatin-I, an endogenous neuropeptide containing D-amino acid residue. X-ray crystal structure of its neutral form.
FEBS letters 1990;276(1-2):95-7.
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1990: Yamamoto D; Ishida T; Inoue M
A comparison between the binding modes of a substrate and inhibitor to papain as observed in complex crystal structures.
Biochemical and biophysical research communications 1990;171(2):711-6.
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1990: Yamamoto D; Ohishi H; Ishida T; Inoue M; Sumiya S; Kitamura K
Molecular dynamics simulation of papain-E-64 (N-[N-(L-3-trans-carboxyoxirane-2-carbonyl)-L-leucyl]agmatine) complex.
Chemical & pharmaceutical bulletin 1990;38(9):2339-43.
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1990: Ishida T; In Y; Inoue M; Kurihara T; Moriomoto K; Morisaka K; Shibata K
Molecular conformations of aminophenylimidazoles exhibiting antiulcer activities.
Chemical & pharmaceutical bulletin 1990;38(7):1803-9.
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1990: Doi M; Ishida T; Inoue M
Conformational characteristics of opioid kappa-receptor agonist: crystal structure of (5S,7S,8S)-(-)-N-methyl-N-[7-(1-pyrrolidinyl)-1- oxaspiro[4.5]dec-8-yl]benzeneacetamide (U69,593), and conformational comparison with some kappa-agonists.
Chemical & pharmaceutical bulletin 1990;38(7):1815-8.
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1990: Yara H; Katagawa Y; Doi M; Ishida T; Inoue M; Yasuda M; Baba A; Iwata H; Kitamura K; Sadatome T
An attempt to structurally convert mu-selective morphine toward delta-receptor binding: dimerization based on enkephalin conformation.
European journal of pharmacology 1990;188(6):359-68.
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1990: Yamamoto D; Matsumoto K; Ohishi H; Ishida T; Inoue M; Kitamura K; Hanada K
The importance of Val-157 hydrophobic interaction for papain inhibitory activity of an epoxysuccinyl amino acid derivative. A structure-activity relationship based on the crystal structure of the papain-E-64-c complex.
FEBS letters 1990;263(1):134-6.
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1990: Ishida T; Ueda H; Segawa K; Doi M; Inoue M
Prominent stacking interaction with aromatic amino acid by N-quarternization of nucleic acid base: X-ray crystallographic characteristics and biological implications.
Archives of biochemistry and biophysics 1990;278(1):217-27.
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1989: Ohishi H; In Y; Ishida T; Inoue M; Sato F; Okitsu M; Ohno T
Structure of 5-methoxy-2-([4-methoxy-3,5-dimethyl-2-pyridinyl) methyl]sulfinyl)-1H-benzimidazole (omeprazole).
Acta crystallographica. Section C, Crystal structure communications 1989;45 ( Pt 12)():1921-3.
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1989: Doi M; Takehara S; Ishida T; Inoue M
Effects of thioamide substitution for the enkephalin conformation. Crystal structure of Boc-Tyr-Gly-Gly-Phe psi [CSNH]Leu-OBzl.
International journal of peptide and protein research 1989;34(5):369-73.
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1989: Yamamoto D; Matsumoto K; Ishida T; Inoue M; Sumiya S; Kitamura K
Crystal structure and molecular conformation of E-64, a cysteine protease inhibitor.
Chemical & pharmaceutical bulletin 1989;37(10):2577-81.
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1989: Ishida T; In Y; Doi M; Inoue M; Yanagisawa I
Structural study of histamine H2-receptor antagonists. Five 3-[2-(diamino-methyleneamino)-4-thiazolylmethylthio]propionamidine and -amide derivatives.
Acta crystallographica. Section B, Structural science 1989;45 ( Pt 5)():505-12.
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1989: Matsumoto K; Yamamoto D; Ohishi H; Tomoo K; Ishida T; Inoue M; Sadatome T; Kitamura K; Mizuno H
Mode of binding of E-64-c, a potent thiol protease inhibitor, to papain as determined by X-ray crystal analysis of the complex.
FEBS letters 1989;245(1-2):177-80.
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1989: Tomoo K; Ohishi H; Ishida T; Inoue M; Ikeda K; Aoki Y; Samejima Y
Revised amino acid sequence, crystallization, and preliminary x-ray diffraction analysis of acidic phospholipase A2 from the venom of Agkistrodon halys blomhoffii.
The Journal of biological chemistry 1989;264(6):3636-8.
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1989: Ueda H; Segawa K; Doi M; Inoue M; Ishida T
Stacking interactions between protonated nucleic acid bases and aromatic amino acids: spectroscopic and structural analyses of m3CMP-tryptophan derivative complex.
Nucleic acids symposium series 1989;(21):59-60.
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1988: Ishida T; Yoneda S; Doi M; Inoue M; Kitamura K
Molecular-dynamics simulations of [Met5]- and [D-Ala2,Met5]-enkephalins. Biological implication of monomeric folded and dimeric unfolded conformations.
The Biochemical journal 1988;255(2):621-8.
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1988: Ishida T; In Y; Ohishi H; Yamamoto D; Inoue M; Tanaka C; Ueno Y; Ohmomo Y; Kanda N; Tanaka A
Structure-activity relationship of aldose reductase inhibitors based on X-ray crystal structures of oxazolecarbamate derivatives.
Molecular pharmacology 1988;34(3):377-87.
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1988: Ishida T; Doi M; Inoue M
A selective recognition mode of a nucleic acid base by an aromatic amino acid: L-phenylalanine-7-methylguanosine 5'-monophosphate stacking interaction.
Nucleic acids research 1988;16(13):6175-90.
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1988: Ueda H; Doi M; Inoue M; Ishida T; Tanaka T; Uesugi S
A possible recognition mode of mRNA cap terminal structure by peptide: cooperative stacking and hydrogen-bond pairing interactions between m7GpppA and Trp-Leu-Glu.
Biochemical and biophysical research communications 1988;154(1):199-204.
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1988: Doi M; Tanaka M; Ikuma K; Nabae M; Kitamura K; Inoue M; Ishida T
Conformational characteristics of receptor-selective opioid peptides. 1H n.m.r. and c.d. spectroscopic studies of delta-kephalin and [Val4]morphiceptin.
The Biochemical journal 1988;251(2):581-8.
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