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Shumpei Ishikawa

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Oligonucleotide Array Sequence Analysis

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Takeo Nakaya; Hiroyuki Aburatani; Rumi Hino; Shumpei Ishikawa; Yoshinao Kikuchi; Akiko Kunita; Keisuke Matsusaka; Masashi Fukayama
Enrichment of stem-like cell population comprises transformation ability of Epstein-Barr virus latent membrane protein 2A for non-transformed cells.
Daisuke Matsubara; Yoshinori Murakami; Hiroyuki Aburatani; Shunsuke Endo; Masashi Fukayama; Hiroko Hoshino; Shumpei Ishikawa; Yuka Kishaba; Sachiko Oguni; Takashi Sakatani; Yukihiko Sugiyama; Tomoko Tamura; Toshiro Niki
Lung cancer with loss of BRG1/BRM, shows epithelial mesenchymal transition phenotype and distinct histologic and genetic features.
Daisuke Matsubara; Yoshinori Murakami; Hiroyuki Aburatani; Shunsuke Endo; Masashi Fukayama; Shumpei Ishikawa; Yoshihiko Kanai; Hiroaki Kataoka; Sachiko Oguni; Shiori Ohara; Takashi Sakatani; Tomoko Tamura; Taichiro Yoshimoto; Toshiro Niki
Identification of CCDC6-RET fusion in the human lung adenocarcinoma cell line, LC-2/ad.

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2013: Takeo Nakaya; Hiroyuki Aburatani; Rumi Hino; Shumpei Ishikawa; Yoshinao Kikuchi; Akiko Kunita; Keisuke Matsusaka; Masashi Fukayama
Enrichment of stem-like cell population comprises transformation ability of Epstein-Barr virus latent membrane protein 2A for non-transformed cells.
Virus research 2013;174(1-2):108-15.
2013: Daisuke Matsubara; Yoshinori Murakami; Hiroyuki Aburatani; Shunsuke Endo; Masashi Fukayama; Hiroko Hoshino; Shumpei Ishikawa; Yuka Kishaba; Sachiko Oguni; Takashi Sakatani; Yukihiko Sugiyama; Tomoko Tamura; Toshiro Niki
Lung cancer with loss of BRG1/BRM, shows epithelial mesenchymal transition phenotype and distinct histologic and genetic features.
Cancer science 2013;104(2):266-73.
2012: Daisuke Matsubara; Yoshinori Murakami; Hiroyuki Aburatani; Shunsuke Endo; Masashi Fukayama; Shumpei Ishikawa; Yoshihiko Kanai; Hiroaki Kataoka; Sachiko Oguni; Shiori Ohara; Takashi Sakatani; Tomoko Tamura; Taichiro Yoshimoto; Toshiro Niki
Identification of CCDC6-RET fusion in the human lung adenocarcinoma cell line, LC-2/ad.
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2012;7(12):1872-6.
2012: Hiroyuki Abe; Rumi Hino; Tsunekazu Hishima; Shumpei Ishikawa; Maya Isogai; Yoshiaki Iwasaki; Akiko Kunita; Daichi Maeda; Keisuke Matsusaka; Yuya Otake; Yoko Tateishi; Hiroshi Uozaki; Aya Shinozaki Ushiku; Tetsuo Ushiku; Masashi Fukayama
ARID1A expression loss in gastric cancer: pathway-dependent roles with and without Epstein-Barr virus infection and microsatellite instability.
Virchows Archiv : an international journal of pathology 2012;461(4):367-77.
2012: Yuji Ikeda; Shumpei Ishikawa; Kei Kawana; Shiro Kozuma; Daichi Maeda; Satsuki Murayama-Hosokawa; Shunsuke Nakagawa; Katsutoshi Oda; Yutaka Takazawa; Osamu Wada-Hiraike; Linghua Wang; Shogo Yamamoto; Tetsu Yano; Hiroyuki Aburatani; Masashi Fukayama; Yuji Taketani
Genome-wide single nucleotide polymorphism arrays as a diagnostic tool in patients with synchronous endometrial and ovarian cancer.
International journal of gynecological cancer : official journal of the International Gynecological Cancer Society 2012;22(5):725-31.
2011: Mariko Tanaka; Makoto Umeda; Noriyoshi Fukushima; Shumpei Ishikawa; Norihiro Kokudo; Junji Shibahara; Aya Shinozaki; Masashi Fukayama
Claudin-18 is an early-stage marker of pancreatic carcinogenesis.
The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 2011;59(10):942-52.
2011: Akira Watanabe; Yasuhiro Yamada; Shogo Ehata; Masashi Fukayama; Yasushi Ino; Shumpei Ishikawa; Daichi Maeda; Kohei Miyazono; Akitake Mukasa; Hideki Ogiwara; Nobuhito Saito; Tomoki Todo; Keisuke Ueki; Hiroyuki Aburatani
Homozygously deleted gene DACH1 regulates tumor-initiating activity of glioma cells.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(30):12384-9.
2011: Takayuki Isagawa; Shumpei Ishikawa; Shoen Kume; Genta Nagae; Noriko Sato; Nobuaki Shiraki; Takanori Fujita; Hiroyuki Aburatani
DNA methylation profiling of embryonic stem cell differentiation into the three germ layers.
PloS one 2011;6(10):e26052.
2010: Daisuke Matsubara; Shumpei Ishikawa; Sachiko Oguni; Hiroyuki Aburatani; Masashi Fukayama; Toshiro Niki
Molecular predictors of sensitivity to the MET inhibitor PHA665752 in lung carcinoma cells.
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2010;5(9):1317-24.
2010: Shogo Yamamoto; Yutaka Midorikawa; Teppei Morikawa; Yoji Nishimura; Hirohiko Sakamoto; Shumpei Ishikawa; Kiwamu Akagi; Hiroyuki Aburatani
Identification of chromosomal aberrations of metastatic potential in colorectal carcinoma.
Genes, chromosomes & cancer 2010;49(5):487-96.
2009: Yutaka Midorikawa; Shogo Yamamoto; Shingo Tsuji; Naoko Kamimura; Shumpei Ishikawa; Hisaki Igarashi; Makuuchi Masatoshi; Norihiro Kokudo; Haruhiko Sugimura; Hiroyuki Aburatani
Allelic imbalances and homozygous deletion on 8p23.2 for stepwise progression of hepatocarcinogenesis.
Hepatology (Baltimore, Md.) 2009;49(2):513-22.
2008: Yu Nakamura; Daisuke Matsubara; Akiteru Goto; Satoshi Ota; Oguni Sachiko; Shumpei Ishikawa; Hiroyuki Aburatani; Keiji Miyazawa; Masashi Fukayama; Toshiro Niki
Constitutive activation of c-Met is correlated with c-Met overexpression and dependent on cell-matrix adhesion in lung adenocarcinoma cell lines.
Cancer science 2008;99(1):14-22.
2007: Katsunori Fujii; Shumpei Ishikawa; Hideki Uchikawa; Daisuke Komura; Michael H Shapero; Fan Shen; Jing Hung; Hiroshi Arai; Yoko Tanaka; Kimio Sasaki; Yoichi Kohno; Masao Yamada; Keith W Jones; Hiroyuki Aburatani; Toshiyuki Miyashita
High-density oligonucleotide array with sub-kilobase resolution reveals breakpoint information of submicroscopic deletions in nevoid basal cell carcinoma syndrome.
Human genetics 2007;122(5):459-66.
2007: Kengo Murata; Satoshi Ota; Toshiro Niki; Akiteru Goto; Chih-Ping Li; Urbiztondo Maria Rhea Ruriko; Shumpei Ishikawa; Hiroyuki Aburatani; Takayuki Kuriyama; Masashi Fukayama
p63 - Key molecule in the early phase of epithelial abnormality in idiopathic pulmonary fibrosis.
Experimental and molecular pathology 2007;83(3):367-76.
2007: Tao Wang; Toshiro Niki; Akiteru Goto; Satoshi Ota; Teppei Morikawa; Yu Nakamura; Etsuko Ohara; Shumpei Ishikawa; Hiroyuki Aburatani; Jun Nakajima; Masashi Fukayama
Hypoxia increases the motility of lung adenocarcinoma cell line A549 via activation of the epidermal growth factor receptor pathway.
Cancer science 2007;98(4):506-11.
2006: Daisuke Komura; Fan Shen; Shumpei Ishikawa; Karen R Fitch; Wenwei Chen; Jane Zhang; Guoying Liu; Sayoko Ihara; Hiroshi Nakamura; Matthew E Hurles; Charles Lee; Stephen W Scherer; Keith W Jones; Michael H Shapero; Jing Huang; Hiroyuki Aburatani
Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.
Genome research 2006;16(12):1575-84.
2006: Daisuke Komura; Kunihiro Nishimura; Shumpei Ishikawa; Binaya Panda; Jing Huang; Hiroshi Nakamura; Sayoko Ihara; Michitaka Hirose; Keith W Jones; Hiroyuki Aburatani
Noise reduction from genotyping microarrays using probe level information.
In silico biology 2006;6(1-2):79-92.
2006: Jing Huang; Wen Wei; Joyce Chen; Jane Zhang; Guoying Liu; Xiaojun Di; Rui Mei; Shumpei Ishikawa; Hiroyuki Aburatani; Keith W Jones; Michael H Shapero
CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.
BMC bioinformatics 2006;7():83.
2005: Daisuke Matsubara; Toshiro Niki; Shumpei Ishikawa; Akiteru Goto; Etsuko Ohara; Takehiko Yokomizo; Claus W Heizmann; Hiroyuki Aburatani; Sachiko Moriyama; Hirokazu Moriyama; Yoshihiro Nishimura; Nobuaki Funata; Masashi Fukayama
Differential expression of S100A2 and S100A4 in lung adenocarcinomas: clinicopathological significance, relationship to p53 and identification of their target genes.
Cancer science 2005;96(12):844-57.
2005: Shumpei Ishikawa; Daisuke Komura; Shingo Tsuji; Kunihiro Nishimura; Shogo Yamamoto; Binaya Panda; Jing Huang; Masashi Fukayama; Keith W Jones; Hiroyuki Aburatani
Allelic dosage analysis with genotyping microarrays.
Biochemical and biophysical research communications 2005;333(4):1309-14.
2005: Shin-ichi Fukumoto; Naoko Yamauchi; Hisashi Moriguchi; Yoshitaka Hippo; Akira Watanabe; Junji Shibahara; Hirokazu Taniguchi; Shumpei Ishikawa; Hirotaka Ito; Shogo Yamamoto; Hiroko Iwanari; Mitsugu Hironaka; Yuichi Ishikawa; Toshiro Niki; Yasunori Sohara; Tatsuhiko Kodama; Masaharu Nishimura; Masashi Fukayama; Hirotoshi Dosaka-Akita; Hiroyuki Aburatani
Overexpression of the aldo-keto reductase family protein AKR1B10 is highly correlated with smokers' non-small cell lung carcinomas.
Clinical cancer research : an official journal of the American Association for Cancer Research 2005;11(5):1776-85.
2004: Shumpei Ishikawa; Naonori Uozumi; Takashi Shiibashi; Takashi Izumi; Masashi Fukayama; Takao Shimizu; Junichi Watanabe; Sadao Nogami
Short report: Lethal malaria in cytosolic phospholipase A2- and phospholipase A2IIA-deficient mice.
The American journal of tropical medicine and hygiene 2004;70(6):645-50.
2004: Akitake Mukasa; Keisuke Ueki; Xijin Ge; Shumpei Ishikawa; Takafumi Ide; Takamitsu Fujimaki; Ryo Nishikawa; Akio Asai; Takaaki Kirino; Hiroyuki Aburatani
Selective expression of a subset of neuronal genes in oligodendroglioma with chromosome 1p loss.
Brain pathology (Zurich, Switzerland) 2004;14(1):34-42.
2003: Daisuke Sugiyama; Hiroyuki Kusuhara; Hirokazu Taniguchi; Shumpei Ishikawa; Yoshitane Nozaki; Hiroyuki Aburatani; Yuichi Sugiyama
Functional characterization of rat brain-specific organic anion transporter (Oatp14) at the blood-brain barrier: high affinity transporter for thyroxine.
The Journal of biological chemistry 2003;278(44):43489-95.
2003: Makoto Kano; Kunihiro Nishimura; Shumpei Ishikawa; Shuichi Tsutsumi; Koichi Hirota; Michitaka Hirose; Hiroyuki Aburatani
Expression imbalance map: a new visualization method for detection of mRNA expression imbalance regions.
Physiological genomics 2003;13(1):31-46.
2003: Yutaka Midorikawa; Shumpei Ishikawa; Hiroko Iwanari; Takeshi Imamura; Hirohiko Sakamoto; Kohei Miyazono; Tatsuhiko Kodama; Makuuchi Masatoshi; Hiroyuki Aburatani
Glypican-3, overexpressed in hepatocellular carcinoma, modulates FGF2 and BMP-7 signaling.
International journal of cancer. Journal international du cancer 2003;103(4):455-65.