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Ruth Isserlin

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TOP 3
Hongbo Guo; Ruth Isserlin; Patrick J Paddison; Sadhna Phanse; Weijia Wang; Peter W Zandstra; Xiaoji Chen; Andrew Emili
Integrative network analysis of signaling in human CD34(+) hematopoietic progenitor cells by global phosphoproteomic profiling using TiO2 enrichment combined with 2D LC-MS/MS and pathway mapping.
Ruth Isserlin; Daniele Merico; Andrew Emili
Global proteomic profiling and enrichment maps of dilated cardiomyopathy.
Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Too many roads not taken.

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All Publications

2013: Hongbo Guo; Ruth Isserlin; Patrick J Paddison; Sadhna Phanse; Weijia Wang; Peter W Zandstra; Xiaoji Chen; Andrew Emili
Integrative network analysis of signaling in human CD34(+) hematopoietic progenitor cells by global phosphoproteomic profiling using TiO2 enrichment combined with 2D LC-MS/MS and pathway mapping.
Proteomics 2013;13(8):1325-33.
2013: Ruth Isserlin; Daniele Merico; Andrew Emili
Global proteomic profiling and enrichment maps of dilated cardiomyopathy.
Methods in molecular biology (Clifton, N.J.) 2013;1005():53-66.
2011: Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Too many roads not taken.
Nature 2011;470(7333):163-5.
2011: Daniele Merico; Ruth Isserlin; Gary D Bader
Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map.
Methods in molecular biology (Clifton, N.J.) 2011;781():257-77.
2011: Layla Oesper; Daniele Merico; Ruth Isserlin; Gary D Bader
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks.
Source code for biology and medicine 2011;6():7.
2011: Ruth Isserlin; Rashad A El-Badrawi; Gary D Bader
The Biomolecular Interaction Network Database in PSI-MI 2.5.
Database : the journal of biological databases and curation 2011;2011():baq037.
2010: Nicolas Bousette; Shaan Chugh; Vincent Fong; Ruth Isserlin; Kyoung-Han Kim; Allen Volchuk; Peter H Backx; Peter Liu; Thomas Kislinger; David H MacLennan; Andrew Emili; Anthony O Gramolini
Constitutively active calcineurin induces cardiac endoplasmic reticulum stress and protects against apoptosis that is mediated by alpha-crystallin-B.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(43):18481-6.
2010: Anthony B Mak; Zuyao Ni; Johannes A Hewel; Ginny I Chen; Guoqing Zhong; Konstantina Karamboulas; Kim Blakely; Sandra Smiley; Edyta Marcon; Denitza Roudeva; Joyce Li; Jonathan B Olsen; Cuihong Wan; Thanuja Punna; Ruth Isserlin; Sergei Chetyrkin; Anne-Claude Gingras; Andrew Emili; Jack Greenblatt; Jason Moffat
A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency.
Molecular & cellular proteomics : MCP 2010;9(5):811-23.
2010: Ruth Isserlin; Daniele Merico; Rasoul Alikhani-Koupaei; Anthony Gramolini; Gary D Bader; Andrew Emili
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps.
Proteomics 2010;10(6):1316-27.
2010: Daniele Merico; Ruth Isserlin; Oliver Stueker; Andrew Emili; Gary D Bader
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation.
PloS one 2010;5(11):e13984.
2009: Nicolas Bousette; Thomas Kislinger; Vincent Fong; Ruth Isserlin; Johannes A Hewel; Andrew Emil; Anthony O Gramolini
Large-scale characterization and analysis of the murine cardiac proteome.
Journal of proteome research 2009;8(4):1887-901.
2008: Ruth Isserlin; Andrew Emili
Interpretation of large-scale quantitative shotgun proteomic profiles for biomarker discovery.
Current opinion in molecular therapeutics 2008;10(3):231-42.
2008: Anthony O Gramolini; Thomas Kislinger; Rasoul Alikhani-Koopaei; Vincent Fong; Natalie J Thompson; Ruth Isserlin; Parveen Sharma; Gavin Y Oudit; Maria G Trivieri; Ailís Fagan; Anitha Kannan; Desmond G Higgins; Hendrik Huedig; George Hess; Sara Arab; Jonathan G Seidman; Christine E Seidman; Brendan Frey; Marc David Perry; Peter H Backx; Peter P Liu; David H MacLennan; Andrew Emili
Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses.
Molecular & cellular proteomics : MCP 2008;7(3):519-33.
2007: Ruth Isserlin; Andrew Emili
Nine steps to proteomic wisdom: A practical guide to using protein-protein interaction networks and molecular pathways as a framework for interpreting disease proteomic profiles.
Proteomics. Clinical applications 2007;1(9):1156-68.
2007: Doron Betel; Kevin E Breitkreuz; Ruth Isserlin; Danielle Dewar-Darch; Mike Tyers; Christopher W V Hogue
Structure-templated predictions of novel protein interactions from sequence information.
PLoS computational biology 2007;3(9):1783-9.
2004: Doron Betel; Ruth Isserlin; Christopher W V Hogue
Analysis of domain correlations in yeast protein complexes.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i55-62.
2002: Katerina Michalickova; Gary Bader; Michel Dumontier; Hao Lieu; Doron Betel; Ruth Isserlin; Christopher W V Hogue
SeqHound: biological sequence and structure database as a platform for bioinformatics research.
BMC bioinformatics 2002;3():32.