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Robert Jansen
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Research Profile (preview)
Concepts & Ideas
Genes & Molecular Sequences
Phenomena
Anatomy
Chemicals & Drugs
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Network (preview)
11
Boore, Jeffrey
11
Daniell, Henry
11
Lee, Seung-Bum
8
Raubeson, Linda
7
Kuehl, Jennifer
6
Leebens-Mack, Jim
6
dePamphilis, Claude
6
Chumley, Timothy
5
Francisco-Ortega, Javier
5
Saski, Christopher
4
Tomkins, Jeffrey
4
Warnow, Tandy
4
Cai, Zhengqiu
4
Fourcade, Matthew
4
Santos-Guerra, Arnoldo
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Geonetwork of Robert Jansen (preview)
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All Publications
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2008: Cai Zhengqiu; Guisinger Mary; Kim Hyi-Gyung; Ruck Elizabeth; Blazier John C; McMurtry Vanity; Kuehl Jennifer V; Boore Jeffrey; Jansen Robert K
Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions.
Journal of molecular evolution 2008;67(6):696-704.
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2008: Guisinger Mary M; Kuehl Jennifer V; Boore Jeffrey L; Jansen Robert K
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(47):18424-9.
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2008: Jansen Robert K; Wojciechowski Martin F; Sanniyasi Elumalai; Lee Seung-Bum; Daniell Henry
Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae).
Molecular phylogenetics and evolution 2008;48(3):1204-17.
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2008: Steele P Roxanne; Guisinger-Bellian Mary; Linder C Randal; Jansen Robert K
Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids.
Molecular phylogenetics and evolution 2008;48(3):1013-26.
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2008: Haberle Rosemarie C; Fourcade H Matthew; Boore Jeffrey L; Jansen Robert K
Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes.
Journal of molecular evolution 2008;66(4):350-61.
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2008: Daniell Henry; Wurdack Kenneth J; Kanagaraj Anderson; Lee Seung-Bum; Saski Christopher; Jansen Robert K
The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2008;116(5):723-37.
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2007: Jansen Robert K; Cai Zhengqiu; Raubeson Linda A; Daniell Henry; Depamphilis Claude W; Leebens-Mack James; Müller Kai F; Guisinger-Bellian Mary; Haberle Rosemarie C; Hansen Anne K; Chumley Timothy W; Lee Seung-Bum; Peery Rhiannon; McNeal Joel R; Kuehl Jennifer V; Boore Jeffrey L
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(49):19369-74.
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2007: Hansen Debra R; Dastidar Sayantani G; Cai Zhengqiu; Penaflor Cynthia; Kuehl Jennifer V; Boore Jeffrey L; Jansen Robert K
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae).
Molecular phylogenetics and evolution 2007;45(2):547-63.
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2007: Alverson Andrew J; Jansen Robert K; Theriot Edward C
Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms.
Molecular phylogenetics and evolution 2007;45(1):193-210.
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2007: Saski Christopher; Lee Seung-Bum; Fjellheim Siri; Guda Chittibabu; Jansen Robert K; Luo Hong; Tomkins Jeffrey; Rognli Odd Arne; Daniell Henry; Clarke Jihong Liu
Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2007;115(4):571-90.
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2007: Lee Hae-Lim; Jansen Robert K; Chumley Timothy W; Kim Ki-Joong
Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions.
Molecular biology and evolution 2007;24(5):1161-80.
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2007: Samson Nalapalli; Bausher Michael G; Lee Seung-Bum; Jansen Robert K; Daniell Henry
The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms.
Plant biotechnology journal 2007;5(2):339-53.
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2007: Raubeson Linda A; Peery Rhiannon; Chumley Timothy W; Dziubek Chris; Fourcade H Matthew; Boore Jeffrey L; Jansen Robert K
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus.
BMC genomics 2007;8():174.
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2006: Chumley Timothy W; Palmer Jeffrey D; Mower Jeffrey P; Fourcade H Matthew; Calie Patrick J; Boore Jeffrey L; Jansen Robert K
The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants.
Molecular biology and evolution 2006;23(11):2175-90.
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2006: Wang Li-San; Warnow Tandy; Moret Bernard M E; Jansen Robert K; Raubeson Linda A
Distance-based genome rearrangement phylogeny.
Journal of molecular evolution 2006;63(4):473-83.
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2006: Moore Michael J; Jansen Robert K
Molecular evidence for the age, origin, and evolutionary history of the American desert plant genus Tiquilia (Boraginaceae).
Molecular phylogenetics and evolution 2006;39(3):668-87.
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2006: Daniell Henry; Lee Seung-Bum; Grevich Justin; Saski Christopher; Quesada-Vargas Tania; Guda Chittibabu; Tomkins Jeffrey; Jansen Robert K
Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;112(8):1503-18.
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2006: Cui Liying; Veeraraghavan Narayanan; Richter Alexander; Wall Kerr; Jansen Robert K; Leebens-Mack Jim; Makalowska Izabela; dePamphilis Claude W
ChloroplastDB: the Chloroplast Genome Database.
Nucleic acids research 2006;34(Database issue):D692-6.
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2006: Cai Zhengqiu; Penaflor Cynthia; Kuehl Jennifer V; Leebens-Mack James; Carlson John E; dePamphilis Claude W; Boore Jeffrey L; Jansen Robert K
Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids.
BMC evolutionary biology 2006;6():77.
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2006: Bausher Michael G; Singh Nameirakpam D; Lee Seung-Bum; Jansen Robert K; Daniell Henry
The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms.
BMC plant biology 2006;6():21.
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2006: Ruhlman Tracey; Lee Seung-Bum; Jansen Robert K; Hostetler Jessica B; Tallon Luke J; Town Christopher D; Daniell Henry
Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.
BMC genomics 2006;7():222.
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2006: Leebens-Mack Jim; Vision Todd; Brenner Eric; Bowers John E; Cannon Steven; Clement Mark J; Cunningham Clifford W; dePamphilis Claude; deSalle Rob; Doyle Jeff J; Eisen Jonathan A; Gu Xun; Harshman John; Jansen Robert K; Kellogg Elizabeth A; Koonin Eugene V; Mishler Brent D; Philippe Hervé; Pires J Chris; Qiu Yin-Long; Rhee Seung Y; Sjölander Kimmen; Soltis Douglas E; Soltis Pamela S; Stevenson Dennis W; Wall Kerr; Warnow Tandy; Zmasek Christian
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
Omics : a journal of integrative biology 2006;10(2):231-7.
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2006: Jansen Robert K; Kaittanis Charalambos; Saski Christopher; Lee Seung-Bum; Tomkins Jeffrey; Alverson Andrew J; Daniell Henry
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids.
BMC evolutionary biology 2006;6():32.
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2006: Lee Seung-Bum; Kaittanis Charalambos; Jansen Robert K; Hostetler Jessica B; Tallon Luke J; Town Christopher D; Daniell Henry
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms.
BMC genomics 2006;7():61.
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2005: Leebens-Mack Jim; Raubeson Linda A; Cui Liying; Kuehl Jennifer V; Fourcade Matthew H; Chumley Timothy W; Boore Jeffrey L; Jansen Robert K; depamphilis Claude W
Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.
Molecular biology and evolution 2005;22(10):1948-63.
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2005: Saski Christopher; Lee Seung-Bum; Daniell Henry; Wood Todd C; Tomkins Jeffrey; Kim Hyi-Gyung; Jansen Robert K
Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes.
Plant molecular biology 2005;59(2):309-22.
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2005: Kim Ki-Joong; Choi Keung-Sun; Jansen Robert K
Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae).
Molecular biology and evolution 2005;22(9):1783-92.
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2005: Jansen Robert K; Raubeson Linda A; Boore Jeffrey L; dePamphilis Claude W; Chumley Timothy W; Haberle Rosemarie C; Wyman Stacia K; Alverson Andrew J; Peery Rhiannon; Herman Sallie J; Fourcade H Matthew; Kuehl Jennifer V; McNeal Joel R; Leebens-Mack James; Cui Liying
Methods for obtaining and analyzing whole chloroplast genome sequences.
Methods in enzymology 2005;395():348-84.
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2004: Wyman Stacia K; Jansen Robert K; Boore Jeffrey L
Automatic annotation of organellar genomes with DOGMA.
Bioinformatics (Oxford, England) 2004;20(17):3252-5.
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2004: Cosner Mary E; Raubeson Linda A; Jansen Robert K
Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes.
BMC evolutionary biology 2004;4():27.
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2003: Goertzen Leslie R; Cannone Jamie J; Gutell Robin R; Jansen Robert K
ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae.
Molecular phylogenetics and evolution 2003;29(2):216-34.
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2002: Barber Janet C; Francisco-Ortega Javier; Santos-Guerra Arnoldo; Turner Kathryn G; Jansen Robert K
Origin of Macaronesian Sideritis L. (Lamioideae: Lamiaceae) inferred from nuclear and chloroplast sequence datasets.
Molecular phylogenetics and evolution 2002;23(3):293-306.
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2002: Wang Li-San; Jansen Robert K; Moret Bernard M E; Raubeson Linda A; Warnow Tandy
Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():524-35.
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2000: Linder C R; Goertzen L R; Heuvel B V; Francisco-Ortega J; Jansen R K
The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in asteraceae and closely allied families.
Molecular phylogenetics and evolution 2000;14(2):285-303.
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2000: Cosner M E; Jansen R K; Moret B M; Raubeson L A; Wang L S; Warnow T; Wyman S
A new fast heuristic for computing the breakpoint phylogeny and experimental phylogenetic analyses of real and synthetic data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():104-15.
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1999: Panero J L; Francisco-Ortega J; Jansen R K; Santos-Guerra A
Molecular evidence for multiple origins of woodiness and a new world biogeographic connection of the Macaronesian island endemic Pericallis (Asteraceae: senecioneae).
Proceedings of the National Academy of Sciences of the United States of America 1999;96(24):13886-91.
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1999: Francisco-Ortega J; Fuertes-Aguilar J; Gómez-Campo C; Santos-Guerra A; Jansen R K
Internal transcribed spacer sequence phylogeny of Crambe L. (Brassicaceae): molecular data reveal two Old World disjunctions.
Molecular phylogenetics and evolution 1999;11(3):361-80.
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1998: Kim H G; Keeley S C; Vroom P S; Jansen R K
Molecular evidence for an African origin of the Hawaiian endemic Hesperomannia (Asteraceae).
Proceedings of the National Academy of Sciences of the United States of America 1998;95(26):15440-5.
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1997: Cosner M E; Jansen R K; Palmer J D; Downie S R
The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families.
Current genetics 1997;31(5):419-29.
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1996: Francisco-Ortega J; Jansen R K; Santos-Guerra A
Chloroplast DNA evidence of colonization, adaptive radiation, and hybridization in the evolution of the Macaronesian flora.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(9):4085-90.
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1995: Kim K J; Jansen R K
ndhF sequence evolution and the major clades in the sunflower family.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(22):10379-83.
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