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Mark Johnson

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Anssi M Malinen; Marimuthu Parthiban; Matti Turtola; Lioudmila Vainonen; Mark S Johnson; Georgiy A Belogurov
Active site opening and closure control translocation of multisubunit RNA polymerase.
Riku Hakulinen; Mark S Johnson; Jukka V Lehtonen; Santeri Puranen; Jukka Corander
Probabilistic prediction of contacts in protein-ligand complexes.
Bhanupratap Chouhan; Alexander Denesyuk; Jyrki Heino; Mark S Johnson; Konstantin Denessiouk
Conservation of the human integrin-type beta-propeller domain in bacteria.

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All Publications

2012: Anssi M Malinen; Marimuthu Parthiban; Matti Turtola; Lioudmila Vainonen; Mark S Johnson; Georgiy A Belogurov
Active site opening and closure control translocation of multisubunit RNA polymerase.
Nucleic acids research 2012;40(15):7442-51.
2012: Riku Hakulinen; Mark S Johnson; Jukka V Lehtonen; Santeri Puranen; Jukka Corander
Probabilistic prediction of contacts in protein-ligand complexes.
PloS one 2012;7(11):e49216.
2011: Bhanupratap Chouhan; Alexander Denesyuk; Jyrki Heino; Mark S Johnson; Konstantin Denessiouk
Conservation of the human integrin-type beta-propeller domain in bacteria.
PloS one 2011;6(10):e25069.
2010: J Santeri Puranen; Mikko J Vainio; Mark S Johnson
Accurate conformation-dependent molecular electrostatic potentials for high-throughput in silico drug discovery.
Journal of computational chemistry 2010;31(8):1722-32.
2010: Liisa Nissinen; Olli Pentikäinen; A Jouppila; Jarmo Käpylä; M Ojala; J Nieminen; A Lipsanen; H Lappalainen; B Eckes; Mark S Johnson; R Lassila; Anne Marjamäki; Jyrki Heino
A small-molecule inhibitor of integrin alpha2 beta1 introduces a new strategy for antithrombotic therapy.
Thrombosis and haemostasis 2010;103(2):387-97.
2010: Johanna Jokinen; Daniel J White; Maria Salmela; Mikko Huhtala; Jarmo Käpylä; Kalle Sipilä; J Santeri Puranen; Liisa Nissinen; Pasi Kankaanpää; Varpu Marjomäki; Timo Hyypiä; Mark S Johnson; Jyrki Heino
Molecular mechanism of alpha2beta1 integrin interaction with human echovirus 1.
The EMBO journal 2010;29(1):196-208.
2009: Mark S Johnson; Ning Lu; Konstantin A Denessiouk; Jyrki Heino; Donald Gullberg
Integrins during evolution: evolutionary trees and model organisms.
Biochimica et biophysica acta 2009;1788(4):779-89.
2009: Denis Tvorogov; Maria Sundvall; Kari Kurppa; Maija Hollmén; Susanna Repo; Mark S Johnson; Klaus Elenius
Somatic mutations of ErbB4: selective loss-of-function phenotype affecting signal transduction pathways in cancer.
The Journal of biological chemistry 2009;284(9):5582-91.
2009: Jyrki Heino; Mikko Huhtala; Jarmo Käpylä; Mark S Johnson
Evolution of collagen-based adhesion systems.
The international journal of biochemistry & cell biology 2009;41(2):341-8.
2008: Henri Xhaard; Vera Backström; Konstantin Denessiouk; Mark S Johnson
Coordination of Na(+) by monoamine ligands in dopamine, norepinephrine, and serotonin transporters.
Journal of chemical information and modeling 2008;48(7):1423-37.
2008: Juha A E Määttä; Tomi T Airenne; Henri R Nordlund; Janne Jänis; Tiina A Paldanius; Pirjo Vainiotalo; Mark S Johnson; Markku S Kulomaa; Vesa P Hytönen
Rational modification of ligand-binding preference of avidin by circular permutation and mutagenesis.
Chembiochem : a European journal of chemical biology 2008;9(7):1124-35.
2008: Mira Tulla; Matti Lahti; J Santeri Puranen; Anna-Maria Brandt; Jarmo Käpylä; Anna Domogatskaya; Tiina A Salminen; Karl Tryggvason; Mark S Johnson; Jyrki Heino
Effects of conformational activation of integrin alpha 1I and alpha 2I domains on selective recognition of laminin and collagen subtypes.
Experimental cell research 2008;314(8):1734-43.
2008: Konstantin A Denessiouk; Alexander I Denesyuk; Mark S Johnson
Negative modulation of signal transduction via interleukin splice variation.
Proteins 2008;71(2):751-70.
2007: Jonne Laurila; Henri Xhaard; Jori O Ruuskanen; M J M Rantanen; H K Karlsson; Mark S Johnson; Mika Scheinin
The second extracellular loop of alpha2A-adrenoceptors contributes to the binding of yohimbine analogues.
British journal of pharmacology 2007;151(8):1293-304.
2007: Jarmo Käpylä; Olli Pentikäinen; Tommi Nyrönen; Liisa Nissinen; Sanna Lassander; Johanna Jokinen; Matti Lahti; Anne Marjamäki; Mark S Johnson; Jyrki Heino
Small molecule designed to target metal binding site in the alpha2I domain inhibits integrin function.
Journal of medicinal chemistry 2007;50(11):2742-6.
2007: Mira Tulla; Mikko Huhtala; Juha Jäälinoja; Jarmo Käpylä; Richard W Farndale; Leena Ala-Kokko; Mark S Johnson; Jyrki Heino
Analysis of an ascidian integrin provides new insight into early evolution of collagen recognition.
FEBS letters 2007;581(13):2434-40.
2007: Wendy L Connors; Johanna Jokinen; Daniel J White; J Santeri Puranen; Pasi Kankaanpää; Paula Upla; Mira Tulla; Mark S Johnson; Jyrki Heino
Two synergistic activation mechanisms of alpha2beta1 integrin-mediated collagen binding.
The Journal of biological chemistry 2007;282(19):14675-83.
2007: Vesa P Hytönen; Juha A E Määttä; Einari Niskanen; Juhani Huuskonen; Kaisa J Helttunen; Katrin K Halling; Henri R Nordlund; Kari Rissanen; Mark S Johnson; Tiina A Salminen; Markku S Kulomaa; Olli H Laitinen; Tomi T Airenne
Structure and characterization of a novel chicken biotin-binding protein A (BBP-A).
BMC structural biology 2007;7():8.
2007: Heidi Kidron; Susanna Repo; Mark S Johnson; Tiina A Salminen
Functional classification of amino acid decarboxylases from the alanine racemase structural family by phylogenetic studies.
Molecular biology and evolution 2007;24(1):79-89.
2006: Susanna Repo; Tiina Paldanius; Vesa P Hytönen; Thomas Nyholm; Katrin K Halling; Juhani Huuskonen; Olli Pentikäinen; Kari Rissanen; J Peter Slotte; Tomi T Airenne; Tiina A Salminen; Markku S Kulomaa; Mark S Johnson
Binding properties of HABA-type azo derivatives to avidin and avidin-related protein 4.
Chemistry & biology 2006;13(10):1029-39.
2006: Vesa P Hytönen; Jarno Hörhä; Tomi T Airenne; Einari Niskanen; Kaisa J Helttunen; Mark S Johnson; Tiina A Salminen; Markku S Kulomaa; Henri R Nordlund
Controlling quaternary structure assembly: subunit interface engineering and crystal structure of dual chain avidin.
Journal of molecular biology 2006;359(5):1352-63.
2006: James M Sanders; Olli Pentikäinen; Luca Settimo; Ulla Pentikäinen; Muneo Shoji; Makoto Sasaki; Ryuichi Sakai; Mark S Johnson; Geoffrey T Swanson
Determination of binding site residues responsible for the subunit selectivity of novel marine-derived compounds on kainate receptors.
Molecular pharmacology 2006;69(6):1849-60.
2006: Ulla Pentikäinen; Luca Settimo; Mark S Johnson; Olli Pentikäinen
Subtype selectivity and flexibility of ionotropic glutamate receptors upon antagonist ligand binding.
Organic & biomolecular chemistry 2006;4(6):1058-70.
2006: Henri Xhaard; Ville-Veikko Rantanen; Tommi Nyrönen; Mark S Johnson
Molecular evolution of adrenoceptors and dopamine receptors: implications for the binding of catecholamines.
Journal of medicinal chemistry 2006;49(5):1706-19.
2006: Julius Anckar; Ville Hietakangas; Konstantin Denessiouk; Dennis J Thiele; Mark S Johnson; Lea Sistonen
Inhibition of DNA binding by differential sumoylation of heat shock factors.
Molecular and cellular biology 2006;26(3):955-64.
2005: James M Sanders; Koichi Ito; Luca Settimo; Olli Pentikäinen; Muneo Shoji; Makoto Sasaki; Mark S Johnson; Ryuichi Sakai; Geoffrey T Swanson
Divergent pharmacological activity of novel marine-derived excitatory amino acids on glutamate receptors.
The Journal of pharmacology and experimental therapeutics 2005;314(3):1068-78.
2005: Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S Johnson
A priori contact preferences in molecular recognition.
Journal of bioinformatics and computational biology 2005;3(4):861-90.
2005: Tomi T Airenne; Yvonne Nymalm; Heidi Kidron; David J Smith; Marjo Pihlavisto; Marko Salmi; Sirpa Jalkanen; Mark S Johnson; Tiina A Salminen
Crystal structure of the human vascular adhesion protein-1: unique structural features with functional implications.
Protein science : a publication of the Protein Society 2005;14(8):1964-74.
2005: Minna Poukkula; Aura Kaunisto; Ville Hietakangas; Konstantin Denessiouk; Tuire Katajamäki; Mark S Johnson; Lea Sistonen; John E Eriksson
Rapid turnover of c-FLIPshort is determined by its unique C-terminal tail.
The Journal of biological chemistry 2005;280(29):27345-55.
2005: Henri Xhaard; Tommi Nyrönen; Ville-Veikko Rantanen; Jori O Ruuskanen; Jonne Laurila; Tiina A Salminen; Mika Scheinin; Mark S Johnson
Model structures of alpha-2 adrenoceptors in complex with automatically docked antagonist ligands raise the possibility of interactions dissimilar from agonist ligands.
Journal of structural biology 2005;150(2):126-43.
2005: Mikko Huhtala; Jyrki Heino; Daniele Casciari; Alessandra de Luise; Mark S Johnson
Integrin evolution: insights from ascidian and teleost fish genomes.
Matrix biology : journal of the International Society for Matrix Biology 2005;24(2):83-95.
2005: Konstantin A Denessiouk; Mark S Johnson; Alexander I Denesyuk
Novel CalphaNN structural motif for protein recognition of phosphate ions.
Journal of molecular biology 2005;345(3):611-29.
2005: Vesa P Hytönen; Juha A E Määttä; Heidi Kidron; Katrin K Halling; Jarno Hörhä; Tuomas Kulomaa; Thomas Nyholm; Mark S Johnson; Tiina A Salminen; Markku S Kulomaa; Tomi T Airenne
Avidin related protein 2 shows unique structural and functional features among the avidin protein family.
BMC biotechnology 2005;5():28.
2005: Jori O Ruuskanen; Jonne Laurila; Henri Xhaard; Ville-Veikko Rantanen; Karoliina Vuoriluoto; Siegfried Wurster; Anne Marjamäki; Minna Vainio; Mark S Johnson; Mika Scheinin
Conserved structural, pharmacological and functional properties among the three human and five zebrafish alpha 2-adrenoceptors.
British journal of pharmacology 2005;144(2):165-77.
2004: Vesa P Hytönen; Olli H Laitinen; Tomi T Airenne; Heidi Kidron; Niko J Meltola; Eevaleena J Porkka; Jarno Hörhä; Tiina Paldanius; Juha A E Määttä; Henri R Nordlund; Mark S Johnson; Tiina A Salminen; Kari J Airenne; Seppo Ylä-Herttuala; Markku S Kulomaa
Efficient production of active chicken avidin using a bacterial signal peptide in Escherichia coli.
The Biochemical journal 2004;384(Pt 2):385-90.
2004: Daniel J White; Santeri Puranen; Mark S Johnson; Jyrki Heino
The collagen receptor subfamily of the integrins.
The international journal of biochemistry & cell biology 2004;36(8):1405-10.
2004: Jukka V Lehtonen; Dan-Johan Still; Ville-Veikko Rantanen; Jan Ekholm; Dag Björklund; Zuhair Iftikhar; Mikko Huhtala; Susanna Repo; Antti Jussila; Jussi Jaakkola; Olli Pentikäinen; Tommi Nyrönen; Tiina A Salminen; Mats Gyllenberg; Mark S Johnson
BODIL: a molecular modeling environment for structure-function analysis and drug design.
Journal of computer-aided molecular design 2004;18(6):401-19.
2004: Li Xing; Mikko Huhtala; Vilja Pietiäinen; Jarmo Käpylä; Kirsi Vuorinen; Varpu Marjomäki; Jyrki Heino; Mark S Johnson; Timo Hyypiä; R Holland Cheng
Structural and functional analysis of integrin alpha2I domain interaction with echovirus 1.
The Journal of biological chemistry 2004;279(12):11632-8.
2004: Vesa P Hytönen; Thomas Nyholm; Olli Pentikäinen; Jonne Vaarno; Eevaleena J Porkka; Henri R Nordlund; Mark S Johnson; J Peter Slotte; Olli H Laitinen; Markku S Kulomaa
Chicken avidin-related protein 4/5 shows superior thermal stability when compared with avidin while retaining high affinity to biotin.
The Journal of biological chemistry 2004;279(10):9337-43.
2004: Loris Moretti; Olli Pentikäinen; Luca Settimo; Mark S Johnson
Model structures of the N-methyl-D-aspartate receptor subunit NR1 explain the molecular recognition of agonist and antagonist ligands.
Journal of structural biology 2004;145(3):205-15.
2004: Yvonne Nymalm; J Santeri Puranen; Thomas Nyholm; Jarmo Käpylä; Heidi Kidron; Olli Pentikäinen; Tomi T Airenne; Jyrki Heino; J Peter Slotte; Mark S Johnson; Tiina A Salminen
Jararhagin-derived RKKH peptides induce structural changes in alpha1I domain of human integrin alpha1beta1.
The Journal of biological chemistry 2004;279(9):7962-70.
2004: Piia Karisola; Jouni Mikkola; Nisse Kalkkinen; Kari J Airenne; Olli H Laitinen; Susanna Repo; Olli Pentikäinen; Timo Reunala; Kristiina Turjanmaa; Mark S Johnson; Timo Palosuo; Markku S Kulomaa; Harri Alenius
Construction of hevein (Hev b 6.02) with reduced allergenicity for immunotherapy of latex allergy by comutation of six amino acid residues on the conformational IgE epitopes.
Journal of immunology (Baltimore, Md. : 1950) 2004;172(4):2621-8.
2004: Jori O Ruuskanen; Henri Xhaard; Anne Marjamäki; Erik Salaneck; Tiina A Salminen; Yi-Lin Yan; John H Postlethwait; Mark S Johnson; Dan Larhammar; Mika Scheinin
Identification of duplicated fourth alpha2-adrenergic receptor subtype by cloning and mapping of five receptor genes in zebrafish.
Molecular biology and evolution 2004;21(1):14-28.
2003: Olli Pentikäinen; Luca Settimo; Kari Keinänen; Mark S Johnson
Selective agonist binding of (S)-2-amino-3-(3-hydroxy-5-methyl-4-isoxazolyl)propionic acid (AMPA) and 2S-(2alpha,3beta,4beta)-2-carboxy-4-(1-methylethenyl)-3-pyrrolidineacetic acid (kainate) receptors: a molecular modeling study.
Biochemical pharmacology 2003;66(12):2413-25.
2003: Konstantin A Denessiouk; Mark S Johnson
"Acceptor-donor-acceptor" motifs recognize the Watson-Crick, Hoogsteen and Sugar "donor-acceptor-donor" edges of adenine and adenosine-containing ligands.
Journal of molecular biology 2003;333(5):1025-43.
2003: Juha M Peltonen; Tommi Nyrönen; Siegfried Wurster; Marjo Pihlavisto; Anna-Marja Hoffrén; Anne Marjamäki; Henri Xhaard; Liisa Kanerva; Juha-Matti Savola; Mark S Johnson; Mika Scheinin
Molecular mechanisms of ligand-receptor interactions in transmembrane domain V of the alpha2A-adrenoceptor.
British journal of pharmacology 2003;140(2):347-58.
2003: Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S Johnson
A Bayesian molecular interaction library.
Journal of computer-aided molecular design 2003;17(7):435-61.
2003: Yvonne Nymalm; Heidi Kidron; Annu Söderholm; Lenita Viitanen; Kimmo Kaukonen; Marjo Pihlavisto; David Smith; Timo Veromaa; Tomi T Airenne; Mark S Johnson; Tiina A Salminen
Crystallization and preliminary X-ray analysis of the human vascular adhesion protein-1.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 7):1288-90.
2003: Alexander I Denesyuk; Konstantin A Denessiouk; Timo Korpela; Mark S Johnson
Phosphate group binding "cup" of PLP-dependent and non-PLP-dependent enzymes: leitmotif and variations.
Biochimica et biophysica acta 2003;1647(1-2):234-8.
2003: Wan-Ming Zhang; Jarmo Käpylä; J Santeri Puranen; C Graham Knight; Carl-Fredrik Tiger; Olli Pentikäinen; Mark S Johnson; Richard W Farndale; Jyrki Heino; Donald Gullberg
alpha 11beta 1 integrin recognizes the GFOGER sequence in interstitial collagens.
The Journal of biological chemistry 2003;278(9):7270-7.
2002: Annukka Jouppila; Olli Pentikäinen; Luca Settimo; Tommi Nyrönen; Jukka-Pekka Haapalahti; Milla Lampinen; David G Mottershead; Mark S Johnson; Kari Keinänen
Determinants of antagonist binding at the alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor subunit, GluR-D. Role of the conserved arginine 507 and glutamate 727 residues.
European journal of biochemistry / FEBS 2002;269(24):6261-70.
2002: Milla Lampinen; Luca Settimo; Olli Pentikäinen; Annukka Jouppila; David G Mottershead; Mark S Johnson; Kari Keinanen
Discrimination between agonists and antagonists by the alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid-selective glutamate receptor. A mutation analysis of the ligand-binding domain of GluR-D subunit.
The Journal of biological chemistry 2002;277(44):41940-7.
2002: Ville-Veikko Rantanen; Mats Gyllenberg; Timo Koski; Mark S Johnson
A dissimilarity matrix between protein atom classes based on Gaussian mixtures.
Bioinformatics (Oxford, England) 2002;18(9):1257-63.
2002: Piia Karisola; Harri Alenius; Jouni Mikkola; Nisse Kalkkinen; Jari Helin; Olli Pentikäinen; Susanna Repo; Timo Reunala; Kristiina Turjanmaa; Mark S Johnson; Timo Palosuo; Markku S Kulomaa
The major conformational IgE-binding epitopes of hevein (Hev b6.02) are identified by a novel chimera-based allergen epitope mapping strategy.
The Journal of biological chemistry 2002;277(25):22656-61.
2002: Yvonne Nymalm; Zinaida Kravchuk; Tiina A Salminen; Alexander A Chumanevich; Anatoly P Dubnovitsky; Jussi Kankare; Olli Pentikäinen; Jukka Lehtonen; Paolo Arosio; Sergey Martsev; Mark S Johnson
Antiferritin VL homodimer binds human spleen ferritin with high specificity.
Journal of structural biology 2002;138(3):171-86.
2002: Olli H Laitinen; Vesa P Hytönen; Mervi K Ahlroth; Olli Pentikäinen; Ciara Gallagher; Henri R Nordlund; Vladimir Ovod; Ari T Marttila; Eevaleena J Porkka; Sanna Heino; Mark S Johnson; Kari J Airenne; Markku S Kulomaa
Chicken avidin-related proteins show altered biotin-binding and physico-chemical properties as compared with avidin.
The Biochemical journal 2002;363(Pt 3):609-17.
2002: Alexander I Denesyuk; Konstantin A Denessiouk; Timo Korpela; Mark S Johnson
Functional attributes of the phosphate group binding cup of pyridoxal phosphate-dependent enzymes.
Journal of molecular biology 2002;316(1):155-72.
2001: Mira Tulla; Olli Pentikäinen; Tiina Viitasalo; Jarmo Käpylä; Ulla Impola; Petri Nykvist; Liisa Nissinen; Mark S Johnson; Jyrki Heino
Selective binding of collagen subtypes by integrin alpha 1I, alpha 2I, and alpha 10I domains.
The Journal of biological chemistry 2001;276(51):48206-12.
2001: Ville-Veikko Rantanen; Konstantin A Denessiouk; Mats Gyllenberg; Timo Koski; Mark S Johnson
A fragment library based on Gaussian mixtures predicting favorable molecular interactions.
Journal of molecular biology 2001;313(1):197-214.
2001: Konstantin A Denessiouk; Ville-Veikko Rantanen; Mark S Johnson
Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins.
Proteins 2001;44(3):282-91.
2001: Tommi Nyrönen; Marjo Pihlavisto; Juha M Peltonen; Anna-Marja Hoffrén; M Varis; Tiina A Salminen; Siegfried Wurster; Anne Marjamäki; L Kanerva; E Katainen; L Laaksonen; Juha-Matti Savola; Mika Scheinin; Mark S Johnson
Molecular mechanism for agonist-promoted alpha(2A)-adrenoceptor activation by norepinephrine and epinephrine.
Molecular pharmacology 2001;59(5):1343-54.
2000: Konstantin A Denessiouk; Mark S Johnson
When fold is not important: a common structural framework for adenine and AMP binding in 12 unrelated protein families.
Proteins 2000;38(3):310-26.
1999: Olli Pentikäinen; Anna-Marja Hoffrén; Johanna Ivaska; Jarmo Käpylä; Tommi Nyrönen; Jyrki Heino; Mark S Johnson
"RKKH" peptides from the snake venom metalloproteinase of Bothrops jararaca bind near the metal ion-dependent adhesion site of the human integrin alpha(2) I-domain.
The Journal of biological chemistry 1999;274(44):31493-505.
1999: Tiina A Salminen; M Varis; Tommi Nyrönen; Marjo Pihlavisto; Anna-Marja Hoffrén; Tuomas Lönnberg; Anne Marjamäki; Heini Frang; Juha-Matti Savola; Mika Scheinin; Mark S Johnson
Three-dimensional models of alpha(2A)-adrenergic receptor complexes provide a structural explanation for ligand binding.
The Journal of biological chemistry 1999;274(33):23405-13.
1999: Anne Marjamäki; Heini Frang; Marjo Pihlavisto; Anna-Marja Hoffrén; Tiina A Salminen; Mark S Johnson; Jaana Kallio; J A Javitch; Mika Scheinin
Chloroethylclonidine and 2-aminoethyl methanethiosulfonate recognize two different conformations of the human alpha(2A)-adrenergic receptor.
The Journal of biological chemistry 1999;274(31):21867-72.
1999: Tiina A Salminen; Yvonne Nymalm; J Kankare; Jarmo Käpylä; Jyrki Heino; Mark S Johnson
Production, crystallization and preliminary X-ray analysis of the human integrin alpha1 I domain.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 7):1365-7.
1999: Mikko Huhtala; Olli Pentikäinen; Mark S Johnson
A dimeric ternary complex of FGFR [correction of FGFR1], heparin and FGF-1 leads to an 'electrostatic sandwich' model for heparin binding.
Structure (London, England : 1993) 1999;7(6):699-709.
1999: Konstantin A Denessiouk; Alexander I Denesyuk; Jukka V Lehtonen; Timo Korpela; Mark S Johnson
Common structural elements in the architecture of the cofactor-binding domains in unrelated families of pyridoxal phosphate-dependent enzymes.
Proteins 1999;35(2):250-61.
1999: Jukka V Lehtonen; Konstantin A Denessiouk; A C May; Mark S Johnson
Finding local structural similarities among families of unrelated protein structures: a generic non-linear alignment algorithm.
Proteins 1999;34(3):341-55.
1999: Johanna Ivaska; Jarmo Käpylä; Olli Pentikäinen; Anna-Marja Hoffrén; Jorma Hermonen; Pirkko Huttunen; Mark S Johnson; Jyrki Heino
A peptide inhibiting the collagen binding function of integrin alpha2I domain.
The Journal of biological chemistry 1999;274(6):3513-21.
1998: Tiina A Salminen; David J Smith; Sirpa Jalkanen; Mark S Johnson
Structural model of the catalytic domain of an enzyme with cell adhesion activity: human vascular adhesion protein-1 (HVAP-1) D4 domain is an amine oxidase.
Protein engineering 1998;11(12):1195-204.
1998: A Suoniemi; Jarna Tanskanen; Olli Pentikäinen; Mark S Johnson; Alan Schulman
The core domain of retrotransposon integrase in Hordeum: predicted structure and evolution.
Molecular biology and evolution 1998;15(9):1135-44.
1998: Milla Lampinen; Olli Pentikäinen; Mark S Johnson; Kari Keinänen
AMPA receptors and bacterial periplasmic amino acid-binding proteins share the ionic mechanism of ligand recognition.
The EMBO journal 1998;17(16):4704-11.
1998: Konstantin A Denessiouk; Jukka V Lehtonen; Mark S Johnson
Enzyme-mononucleotide interactions: three different folds share common structural elements for ATP recognition.
Protein science : a publication of the Protein Society 1998;7(8):1768-71.
1998: Konstantin A Denessiouk; Jukka V Lehtonen; Timo Korpela; Mark S Johnson
Two "unrelated" families of ATP-dependent enzymes share extensive structural similarities about their cofactor binding sites.
Protein science : a publication of the Protein Society 1998;7(5):1136-46.