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Inge Jonassen
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14
Bø, Trond Hellem
11
Kalland, Karl-Henning
7
Oyan, Anne Margrete
6
Akslen, Lars
6
Dysvik, Bjarte
6
Eidhammer, Ingvar
6
Taylor, William
5
Rostad, Kari
5
Halvorsen, Ole Johan
5
Petersen, Kjell
5
Malde, Ketil
4
Haukaas, Svein
4
Gjertsen, Bjørn Tore
4
Coward, Eivind
4
Bruserud, Oystein
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Geonetwork of Inge Jonassen (preview)
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All Publications
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2009: Taylor William R; Chelliah Vijayalakshmi; Hollup Siv Midtun; MacDonald James T; Jonassen Inge
Probing the "dark matter" of protein fold space.
Structure (London, England : 1993) 2009;17(9):1244-52.
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2009: Leversen Nils Anders; de Souza Gustavo A; Målen Hiwa; Prasad Swati; Jonassen Inge; Wiker Harald G
Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods.
Microbiology (Reading, England) 2009;155(Pt 7):2375-83.
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2009: Pendino Frédéric; Nguyen Eric; Jonassen Inge; Dysvik Bjarte; Azouz Abdulkader; Lanotte Michel; Ségal-Bendirdjian Evelyne; Lillehaug Johan R
Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis.
Blood 2009;113(14):3172-81.
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2009: Salvesen H B; Carter S L; Mannelqvist M; Dutt A; Getz G; Stefansson I M; Raeder M B; Sos M L; Engelsen I B; Trovik J; Wik E; Greulich H; Bø T H; Jonassen I; Thomas R K; Zander T; Garraway L A; Oyan A M; Sellers W R; Kalland K H; Meyerson M; Akslen L A; Beroukhim R
Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(12):4834-9.
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2009: Saelensminde Gisle; Halskau Øyvind; Jonassen Inge
Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role.
Extremophiles : life under extreme conditions 2009;13(1):11-20.
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2009: Øyan Anne Margrete; Anensen Nina; Bø Trond Hellem; Stordrange Laila; Jonassen Inge; Bruserud Øystein; Kalland Karl-Henning; Gjertsen Bjørn Tore
Genes of cell-cell interactions, chemotherapy detoxification and apoptosis are induced during chemotherapy of acute myeloid leukemia.
BMC cancer 2009;9():77.
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2009: Ke Xi-Song; Qu Yi; Rostad Kari; Li Wen-Cheng; Lin Biaoyang; Halvorsen Ole Johan; Haukaas Svein A; Jonassen Inge; Petersen Kjell; Goldfinger Naomi; Rotter Varda; Akslen Lars A; Oyan Anne M; Kalland Karl-Henning
Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis.
PloS one 2009;4(3):e4687.
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2008: Stavrum Anne Kristin; Petersen Kjell; Jonassen Inge; Dysvik Bjarte
Analysis of gene-expression data using J-Express.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2008;Chapter 7():Unit 7.3.
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2008: Taylor William R; Bartlett Gail J; Chelliah Vijayalakshmi; Klose Daniel; Lin Kuang; Sheldon Tom; Jonassen Inge
Prediction of protein structure from ideal forms.
Proteins 2008;70(4):1610-9.
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2008: de Souza Gustavo A; Målen Hiwa; Søfteland Tina; Saelensminde Gisle; Prasad Swati; Jonassen Inge; Wiker Harald G
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example.
BMC genomics 2008;9():316.
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2008: Stavrum Ruth; Valvatne Håvard; Bø Trond H; Jonassen Inge; Hinds Jason; Butcher Philip D; Grewal Harleen M S
Genomic diversity among Beijing and non-Beijing Mycobacterium tuberculosis isolates from Myanmar.
PloS one 2008;3(4):e1973.
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2008: Malde Ketil; Jonassen Inge
Repeats and EST analysis for new organisms.
BMC genomics 2008;9():23.
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2007: Oyan Anne Margrete; Bø Trond Hellem; Jonassen Inge; Ulvestad Elling; Tore Gjertsen Bjørn; Bruserud Oystein; Kalland Karl-Henning
Global gene expression in classification, pathogenetic understanding and identification of therapeutic targets in acute myeloid leukemia.
Current pharmaceutical biotechnology 2007;8(6):344-54.
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2007: Suhr Mai Lill; Dysvik Bjarte; Bruland Ove; Warnakulasuriya Saman; Amaratunga Asoka N; Jonassen Inge; Vasstrand Endre N; Ibrahim Salah O
Gene expression profile of oral squamous cell carcinomas from Sri Lankan betel quid users.
Oncology reports 2007;18(5):1061-75.
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2007: Hystad Marit E; Myklebust June H; Bø Trond H; Sivertsen Einar A; Rian Edith; Forfang Lise; Munthe Else; Rosenwald Andreas; Chiorazzi Michael; Jonassen Inge; Staudt Louis M; Smeland Erlend B
Characterization of early stages of human B cell development by gene expression profiling.
Journal of immunology (Baltimore, Md. : 1950) 2007;179(6):3662-71.
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2007: Petersen Kjell; Oyan Anne Margrete; Rostad Kari; Olsen Sue; Bø Trond Hellem; Salvesen Helga B; Gjertsen Bjørn Tore; Bruserud Oystein; Halvorsen Ole Johan; Akslen Lars Andreas; Steen Vidar M; Jonassen Inge; Kalland Karl-Henning
Comparison of nucleic acid targets prepared from total RNA or poly(A) RNA for DNA oligonucleotide microarray hybridization.
Analytical biochemistry 2007;366(1):46-58.
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2007: Saelensminde Gisle; Halskau Øyvind; Helland Ronny; Willassen Nils-Peder; Jonassen Inge
Structure-dependent relationships between growth temperature of prokaryotes and the amino acid frequency in their proteins.
Extremophiles : life under extreme conditions 2007;11(4):585-96.
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2007: Halvorsen Ole Johan; Rostad Kari; Øyan Anne Margrete; Puntervoll Hanne; Bø Trond Hellem; Stordrange Laila; Olsen Sue; Haukaas Svein Andreas; Hood Leroy; Jonassen Inge; Kalland Karl-Henning; Akslen Lars Andreas
Increased expression of SIM2-s protein is a novel marker of aggressive prostate cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(3):892-7.
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2007: Rostad Kari; Mannelqvist Monica; Halvorsen Ole Johan; Oyan Anne Margrete; Bø Trond Hellem; Stordrange Laila; Olsen Sue; Haukaas Svein Andreas; Lin Biaoyang; Hood Leroy; Jonassen Inge; Akslen Lars Andreas; Kalland Karl-Henning
ERG upregulation and related ETS transcription factors in prostate cancer.
International journal of oncology 2007;30(1):19-32.
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2007: Skjaerven Lars; Jonassen Inge; Reuter Nathalie
TMM@: a web application for the analysis of transmembrane helix mobility.
BMC bioinformatics 2007;8():232.
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2007: Stansberg Christine; Vik-Mo Audun Osland; Holdhus Rita; Breilid Harald; Srebro Boleslaw; Petersen Kjell; Jørgensen Hugo A; Jonassen Inge; Steen Vidar M
Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation.
BMC genomics 2007;8():94.
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2006: Sakariassen Per Ø; Prestegarden Lars; Wang Jian; Skaftnesmo Kai-Ove; Mahesparan Rupavathana; Molthoff Carla; Sminia Peter; Sundlisaeter Eirik; Misra Anjan; Tysnes Berit Bølge; Chekenya Martha; Peters Hans; Lende Gabriel; Kalland Karl Henning; Øyan Anne M; Petersen Kjell; Jonassen Inge; van der Kogel Albert; Feuerstein Burt G; Terzis A Jorge A; Bjerkvig Rolf; Enger Per Øyvind
Angiogenesis-independent tumor growth mediated by stem-like cancer cells.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(44):16466-71.
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2006: Jonassen Inge; Klose Daniel; Taylor William R
Protein model refinement using structural fragment tessellation.
Computational biology and chemistry 2006;30(5):360-6.
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2006: Malde Ketil; Schneeberger Korbinian; Coward Eivind; Jonassen Inge
RBR: library-less repeat detection for ESTs.
Bioinformatics (Oxford, England) 2006;22(18):2232-6.
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2006: Taylor William R; Lin Kuang; Klose Daniel; Fraternali Franca; Jonassen Inge
Dynamic domain threading.
Proteins 2006;64(3):601-14.
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2006: Øyan Anne Margrete; Bø Trond Hellem; Jonassen Inge; Gjertsen Bjørn Tore; Bruserud Øystein; Kalland Karl-Henning
cDNA microarray analysis of non-selected cases of acute myeloid leukemia demonstrates distinct clustering independent of cytogenetic aberrations and consistent with morphological signs of differentiation.
International journal of oncology 2006;28(5):1065-80.
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2006: Dysvik Bjarte; Vasstrand Endre N; Løvlie Roger; Elgindi Osman A-Aziz; Kross Kenneth W; Aarstad Hans J; Johannessen Anne Chr; Jonassen Inge; Ibrahim Salah O
Gene expression profiles of head and neck carcinomas from Sudanese and Norwegian patients reveal common biological pathways regardless of race and lifestyle.
Clinical cancer research : an official journal of the American Association for Cancer Research 2006;12(4):1109-20.
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2005: Malde Ketil; Coward Eivind; Jonassen Inge
A graph based algorithm for generating EST consensus sequences.
Bioinformatics (Oxford, England) 2005;21(8):1371-5.
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2005: Oyan Anne Margrete; Bø Trond Hellem; Jonassen Inge; Ulvestad Elling; Gjertsen Bjørn Tore; Kalland Karl-Henning; Bruserud Oystein
CD34 expression in native human acute myelogenous leukemia blasts: differences in CD34 membrane molecule expression are associated with different gene expression profiles.
Cytometry. Part B, Clinical cytometry 2005;64(1):18-27.
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2005: Halvorsen Ole Johan; Oyan Anne Margrete; Bø Trond Hellem; Olsen Sue; Rostad Kari; Haukaas Svein Andreas; Bakke August Magnar; Marzolf Bruz; Dimitrov Krassen; Stordrange Laila; Lin Biaoyang; Jonassen Inge; Hood Leroy; Akslen Lars Andreas; Kalland Karl-Henning
Gene expression profiles in prostate cancer: association with patient subgroups and tumour differentiation.
International journal of oncology 2005;26(2):329-36.
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2005: Schneeberger Korbinian; Malde Ketil; Coward Eivind; Jonassen Inge
Masking repeats while clustering ESTs.
Nucleic acids research 2005;33(7):2176-80.
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2004: Flikka Kristian; Yadetie Fekadu; Laegreid Astrid; Jonassen Inge
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
BMC bioinformatics 2004;5():117.
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2004: Taylor William R; Jonassen Inge
A structural pattern-based method for protein fold recognition.
Proteins 2004;56(2):222-34.
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2004: Bø Trond Hellem; Dysvik Bjarte; Jonassen Inge
LSimpute: accurate estimation of missing values in microarray data with least squares methods.
Nucleic acids research 2004;32(3):e34.
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2003: Wang Junbai; Bø Trond Hellem; Jonassen Inge; Myklebost Ola; Hovig Eivind
Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data.
BMC bioinformatics 2003;4():60.
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2003: Malde Ketil; Coward Eivind; Jonassen Inge
Fast sequence clustering using a suffix array algorithm.
Bioinformatics (Oxford, England) 2003;19(10):1221-6.
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2002: Jonassen Inge; Eidhammer Ingvar; Conklin Darrell; Taylor William R
Structure motif discovery and mining the PDB.
Bioinformatics (Oxford, England) 2002;18(2):362-7.
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2002: Conklin Darrell; Jonassen Inge; Aasland Rein; Taylor William R
Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences.
Bioinformatics (Oxford, England) 2002;18(1):182-9.
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2002: Bø Trond H; Jonassen Inge; Eidhammer Ingvar; Helgesen Carsten
A fast top-down method for constructing reliable radiation hybrid frameworks.
Bioinformatics (Oxford, England) 2002;18(1):11-8.
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2002: Bø Trond; Jonassen Inge
New feature subset selection procedures for classification of expression profiles.
Genome biology 2002;3(4):RESEARCH0017.
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2001: Dysvik B; Jonassen I
J-Express: exploring gene expression data using Java.
Bioinformatics (Oxford, England) 2001;17(4):369-70.
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2001: Apweiler R; Attwood T K; Bairoch A; Bateman A; Birney E; Biswas M; Bucher P; Cerutti L; Corpet F; Croning M D; Durbin R; Falquet L; Fleischmann W; Gouzy J; Hermjakob H; Hulo N; Jonassen I; Kahn D; Kanapin A; Karavidopoulou Y; Lopez R; Marx B; Mulder N J; Oinn T M; Pagni M; Servant F; Sigrist C J; Zdobnov E M
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic acids research 2001;29(1):37-40.
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2000: Apweiler R; Attwood T K; Bairoch A; Bateman A; Birney E; Biswas M; Bucher P; Cerutti L; Corpet F; Croning M D; Durbin R; Falquet L; Fleischmann W; Gouzy J; Hermjakob H; Hulo N; Jonassen I; Kahn D; Kanapin A; Karavidopoulou Y; Lopez R; Marx B; Mulder N J; Oinn T M; Pagni M; Servant F; Sigrist C J; Zdobnov E M;
InterPro--an integrated documentation resource for protein families, domains and functional sites.
Bioinformatics (Oxford, England) 2000;16(12):1145-50.
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2000: Jonassen I; Eidhammer I; Grindhaug S H; Taylor W R
Searching the protein structure databank with weak sequence patterns and structural constraints.
Journal of molecular biology 2000;304(4):599-619.
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2000: Eidhammer I; Jonassen I; Taylor W R
Structure comparison and structure patterns.
Journal of computational biology : a journal of computational molecular cell biology 2000;7(5):685-716.
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2000: Jonassen I
Discovering patterns conserved in sets of unaligned protein sequences.
Methods in molecular biology (Clifton, N.J.) 2000;143():33-52.
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2000: Vilo J; Brazma A; Jonassen I; Robinson A; Ukkonen E
Mining for putative regulatory elements in the yeast genome using gene expression data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():384-94.
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1999: Jonassen I; Eidhammer I; Taylor W R
Discovery of local packing motifs in protein structures.
Proteins 1999;34(2):206-19.
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1998: Brazma A; Jonassen I; Vilo J; Ukkonen E
Predicting gene regulatory elements in silico on a genomic scale.
Genome research 1998;8(11):1202-15.
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1998: Brazma A; Jonassen I; Eidhammer I; Gilbert D
Approaches to the automatic discovery of patterns in biosequences.
Journal of computational biology : a journal of computational molecular cell biology 1998;5(2):279-305.
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1997: Jonassen I
Efficient discovery of conserved patterns using a pattern graph.
Computer applications in the biosciences : CABIOS 1997;13(5):509-22.
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1996: Brazma A; Jonassen I; Ukkonen E; Vilo J
Discovering patterns and subfamilies in biosequences.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1996;4():34-43.
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1995: Jonassen I; Collins J F; Higgins D G
Finding flexible patterns in unaligned protein sequences.
Protein science : a publication of the Protein Society 1995;4(8):1587-95.
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