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Paul Babitzke

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Chemicals & Drugs

Physiology

Living Beings

Concepts & Ideas

Genes & Molecular Sequences

Operon

Phenomena

Protein Binding

Procedures

Electrophoretic Mobility Shift Assay

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Co-Publications
Name
15
Romeo, Tony
10
Yakhnin, Alexander
10
Yakhnin, Helen
9
Baker, Carol
8
Suzuki, Kazushi
5
Dubey, Ashok
4
Gollnick, Paul
4
Bevilacqua, Philip
4
Wang, Xin
3
Schaak, Janell
3
Du, H
3
Mercante, Jeffrey
2
Kushner, Sidney
2
Georgellis, Dimitris
2
Yanofsky, Charles

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Publications

TOP 3
Mercante Jeffrey; Edwards Adrianne N; Dubey Ashok K; Babitzke Paul; Romeo Tony
Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression.
Perez Nataly; Treviño Jeanette; Liu Zhuyun; Ho Siu Chun Michael; Babitzke Paul; Sumby Paul
A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus.
Babitzke Paul; Baker Carol S; Romeo Tony
Regulation of translation initiation by RNA binding proteins.

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All Publications

2009: Mercante Jeffrey; Edwards Adrianne N; Dubey Ashok K; Babitzke Paul; Romeo Tony
Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression.
Journal of molecular biology 2009;392(2):511-28.
2009: Perez Nataly; Treviño Jeanette; Liu Zhuyun; Ho Siu Chun Michael; Babitzke Paul; Sumby Paul
A genome-wide analysis of small regulatory RNAs in the human pathogen group A Streptococcus.
PloS one 2009;4(11):e7668.
2009: Babitzke Paul; Baker Carol S; Romeo Tony
Regulation of translation initiation by RNA binding proteins.
Annual review of microbiology 2009;63():27-44.
2008: Yakhnin Alexander V; Yakhnin Helen; Babitzke Paul
Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(42):16131-6.
2007: McGraw Adam P; Bevilacqua Philip C; Babitzke Paul
TRAP-5' stem loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region.
RNA (New York, N.Y.) 2007;13(11):2020-33.
2007: Lapouge Karine; Sineva Elena; Lindell Magnus; Starke Katja; Baker Carol S; Babitzke Paul; Haas Dieter
Mechanism of hcnA mRNA recognition in the Gac/Rsm signal transduction pathway of Pseudomonas fluorescens.
Molecular microbiology 2007;66(2):341-56.
2007: Baker Carol S; Eöry Lél A; Yakhnin Helen; Mercante Jeffrey; Romeo Tony; Babitzke Paul
CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence.
Journal of bacteriology 2007;189(15):5472-81.
2007: Yakhnin Helen; Pandit Pallavi; Petty Tom J; Baker Carol S; Romeo Tony; Babitzke Paul
CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding.
Molecular microbiology 2007;64(6):1605-20.
2007: Babitzke Paul; Romeo Tony
CsrB sRNA family: sequestration of RNA-binding regulatory proteins.
Current opinion in microbiology 2007;10(2):156-63.
2007: Yakhnin Helen; Yakhnin Alexander V; Babitzke Paul
Translation control of trpG from transcripts originating from the folate operon promoter of Bacillus subtilis is influenced by translation-mediated displacement of bound TRAP, while translation control of transcripts originating from a newly identified trpG promoter is not.
Journal of bacteriology 2007;189(3):872-9.
2006: Yakhnin Alexander V; Yakhnin Helen; Babitzke Paul
RNA polymerase pausing regulates translation initiation by providing additional time for TRAP-RNA interaction.
Molecular cell 2006;24(4):547-57.
2006: Mercante Jeffrey; Suzuki Kazushi; Cheng Xiaodong; Babitzke Paul; Romeo Tony
Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance.
The Journal of biological chemistry 2006;281(42):31832-42.
2006: Suzuki Kazushi; Babitzke Paul; Kushner Sidney R; Romeo Tony
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.
Genes & development 2006;20(18):2605-17.
2006: Yakhnin Helen; Yakhnin Alexander V; Babitzke Paul
The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding.
Molecular microbiology 2006;61(5):1252-66.
2005: Dubey Ashok K; Baker Carol S; Romeo Tony; Babitzke Paul
RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction.
RNA (New York, N.Y.) 2005;11(10):1579-87.
2005: Wang Xin; Dubey Ashok K; Suzuki Kazushi; Baker Carol S; Babitzke Paul; Romeo Tony
CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli.
Molecular microbiology 2005;56(6):1648-63.
2005: Gollnick Paul; Babitzke Paul; Antson Alfred; Yanofsky Charles
Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis.
Annual review of genetics 2005;39():47-68.
2004: Babitzke Paul
Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein.
Current opinion in microbiology 2004;7(2):132-9.
2004: Yakhnin H; Babitzke P
Gene replacement method for determining conditions in which Bacillus subtilis genes are essential or dispensable for cell viability.
Applied microbiology and biotechnology 2004;64(3):382-6.
2004: Deikus Gintaras; Babitzke Paul; Bechhofer David H
Recycling of a regulatory protein by degradation of the RNA to which it binds.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(9):2747-51.
2004: Yakhnin Helen; Zhang Hong; Yakhnin Alexander V; Babitzke Paul
The trp RNA-binding attenuation protein of Bacillus subtilis regulates translation of the tryptophan transport gene trpP (yhaG) by blocking ribosome binding.
Journal of bacteriology 2004;186(2):278-86.
2003: Schaak Janell E; Babitzke Paul; Bevilacqua Philip C
Phylogenetic conservation of RNA secondary and tertiary structure in the trpEDCFBA operon leader transcript in Bacillus.
RNA (New York, N.Y.) 2003;9(12):1502-15.
2003: Schaak Janell E; Yakhnin Helen; Bevilacqua Philip C; Babitzke Paul
A Mg2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding.
Journal of molecular biology 2003;332(3):555-74.
2003: Dubey Ashok K; Baker Carol S; Suzuki Kazushi; Jones A Daniel; Pandit Pallavi; Romeo Tony; Babitzke Paul
CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript.
Journal of bacteriology 2003;185(15):4450-60.
2003: Weilbacher Thomas; Suzuki Kazushi; Dubey Ashok K; Wang Xin; Gudapaty Seshigirao; Morozov Igor; Baker Carol S; Georgellis Dimitris; Babitzke Paul; Romeo Tony
A novel sRNA component of the carbon storage regulatory system of Escherichia coli.
Molecular microbiology 2003;48(3):657-70.
2003: Babitzke Paul; Schaak Janell; Yakhnin Alexander V; Bevilacqua Philip C
Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system.
Methods in enzymology 2003;371():392-404.
2002: Gollnick Paul; Babitzke Paul
Transcription attenuation.
Biochimica et biophysica acta 2002;1577(2):240-50.
2002: Suzuki Kazushi; Wang Xin; Weilbacher Thomas; Pernestig Anna-Karin; Melefors Ojar; Georgellis Dimitris; Babitzke Paul; Romeo Tony
Regulatory circuitry of the CsrA/CsrB and BarA/UvrY systems of Escherichia coli.
Journal of bacteriology 2002;184(18):5130-40.
2002: Yakhnin Alexander V; Babitzke Paul
NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism invitro.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(17):11067-72.
2002: Baker Carol S; Morozov Igor; Suzuki Kazushi; Romeo Tony; Babitzke Paul
CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli.
Molecular microbiology 2002;44(6):1599-610.
2002: Valbuzzi Angela; Gollnick Paul; Babitzke Paul; Yanofsky Charles
The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein.
The Journal of biological chemistry 2002;277(12):10608-13.
2001: Gudapaty S; Suzuki K; Wang X; Babitzke P; Romeo T
Regulatory interactions of Csr components: the RNA binding protein CsrA activates csrB transcription in Escherichia coli.
Journal of bacteriology 2001;183(20):6017-27.
2001: Yakhnin H; Babiarz J E; Yakhnin A V; Babitzke P
Expression of the Bacillus subtilis trpEDCFBA operon is influenced by translational coupling and Rho termination factor.
Journal of bacteriology 2001;183(20):5918-26.
2001: Babitzke P; Gollnick P
Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure.
Journal of bacteriology 2001;183(20):5795-802.
2001: Wei B L; Brun-Zinkernagel A M; Simecka J W; Prüss B M; Babitzke P; Romeo T
Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli.
Molecular microbiology 2001;40(1):245-56.
2000: Du H; Yakhnin A V; Dharmaraj S; Babitzke P
trp RNA-binding attenuation protein-5' stem-loop RNA interaction is required for proper transcription attenuation control of the Bacillus subtilis trpEDCFBA operon.
Journal of bacteriology 2000;182(7):1819-27.
2000: Yakhnin A V; Trimble J J; Chiaro C R; Babitzke P
Effects of mutations in the L-tryptophan binding pocket of the Trp RNA-binding attenuation protein of Bacillus subtilis.
The Journal of biological chemistry 2000;275(6):4519-24.
1999: Sudershana S; Du H; Mahalanabis M; Babitzke P
A 5' RNA stem-loop participates in the transcription attenuation mechanism that controls expression of the Bacillus subtilis trpEDCFBA operon.
Journal of bacteriology 1999;181(18):5742-9.
1998: Du H; Babitzke P
trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis.
The Journal of biological chemistry 1998;273(32):20494-503.
1998: Granger L L; O'Hara E B; Wang R F; Meffen F V; Armstrong K; Yancey S D; Babitzke P; Kushner S R
The Escherichia coli mrsC gene is required for cell growth and mRNA decay.
Journal of bacteriology 1998;180(7):1920-8.
1997: Babitzke P
Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel.
Molecular microbiology 1997;26(1):1-9.
1997: Du H; Tarpey R; Babitzke P
The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis.
Journal of bacteriology 1997;179(8):2582-6.
1996: Babitzke P; Yealy J; Campanelli D
Interaction of the trp RNA-Binding attenuation protein (TRAP) of Bacillus subtilis with RNA: effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure.
Journal of bacteriology 1996;178(17):5159-63.

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