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Jerzy Jurka

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Evolution, Molecular

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Publications

TOP 3
Weidong Bao; Jerzy Jurka
Homologues of bacterial TnpB_IS605 are widespread in diverse eukaryotic transposable elements.
Irina R Arkhipova; Mark A Batzer; Juergen Brosius; Cédric Feschotte; John V Moran; Jürgen Schmitz; Jerzy Jurka
Genomic impact of eukaryotic transposable elements.
Jerzy Jurka; Oleksiy Kohany; Kenji K Kojima; Weidong Bao; Matthew G Yurka
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.

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All Publications

2013: Weidong Bao; Jerzy Jurka
Homologues of bacterial TnpB_IS605 are widespread in diverse eukaryotic transposable elements.
Mobile DNA 2013;4(1):12.
2012: Irina R Arkhipova; Mark A Batzer; Juergen Brosius; Cédric Feschotte; John V Moran; Jürgen Schmitz; Jerzy Jurka
Genomic impact of eukaryotic transposable elements.
Mobile DNA 2012;3(1):19.
2012: Jerzy Jurka; Oleksiy Kohany; Kenji K Kojima; Weidong Bao; Matthew G Yurka
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
Biology direct 2012;7():36.
2011: Kenji K Kojima; Jerzy Jurka
Crypton transposons: identification of new diverse families and ancient domestication events.
Mobile DNA 2011;2(1):12.
2011: Jerzy Jurka; Weidong Bao; Kenji K Kojima
Families of transposable elements, population structure and the origin of species.
Biology direct 2011;6():44.
2010: Weidong Bao; Jerzy Jurka
Origin and evolution of LINE-1 derived "half-L1" retrotransposons (HAL1).
Gene 2010;465(1-2):9-16.
2010: Weidong Bao; Vladimir V Kapitonov; Jerzy Jurka
Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons.
Mobile DNA 2010;1(1):3.
2009: Vladimir V Kapitonov; Sébastien Tempel; Jerzy Jurka
Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences.
Gene 2009;448(2):207-13.
2009: Weidong Bao; Matthew G Jurka; Vladimir V Kapitonov; Jerzy Jurka
New superfamilies of eukaryotic DNA transposons and their internal divisions.
Molecular biology and evolution 2009;26(5):983-93.
2008: Vladimir V Kapitonov; Jerzy Jurka
A universal classification of eukaryotic transposable elements implemented in Repbase.
Nature reviews. Genetics 2008;9(5):411-2; author reply 414.
2008: Ludivine Sinzelle; Vladimir V Kapitonov; Dawid P Grzela; Tobias Jursch; Jerzy Jurka; Zsuzsanna Izsvák; Zoltán Ivics
Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(12):4715-20.
2008: Sébastien Tempel; Matthew Jurka; Jerzy Jurka
VisualRepbase: an interface for the study of occurrences of transposable element families.
BMC bioinformatics 2008;9():345.
2007: Vania Yotova; Jean-François Lefebvre; Oleksiy Kohany; Jerzy Jurka; Roman Michalski; David Modiano; Gerd Utermann; scott williams; Damian Labuda
Tracing genetic history of modern humans using X-chromosome lineages.
Human genetics 2007;122(5):431-43.
2007: Vladimir V Kapitonov; Jerzy Jurka
Helitrons on a roll: eukaryotic rolling-circle transposons.
Trends in genetics : TIG 2007;23(10):521-9.
2007: Nicholas Putnam; Mansi Srivastava; Uffe Hellsten; Bill Dirks; Jarrod Chapman; Asaf Salamov; Astrid Terry; Harris Shapiro; Erika Lindquist; Vladimir V Kapitonov; Jerzy Jurka; Grigory Genikhovich; Igor V Grigoriev; Susan M Lucas; Robert E Steele; John R Finnerty; Ulrich Technau; Mark Q Martindale; Dan S Rokhsar
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
Science (New York, N.Y.) 2007;317(5834):86-94.
2007: Andrew Gentles; Matthew J Wakefield; Oleksiy Kohany; Wanjun Gu; Mark A Batzer; David D Pollock; Jerzy Jurka
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
Genome research 2007;17(7):992-1004.
2007: Wanjun Gu; David A Ray; Jerilyn A Walker; Erin W Barnes; Andrew Gentles; Paul B Samollow; Jerzy Jurka; Mark A Batzer; David D Pollock
SINEs, evolution and genome structure in the opossum.
Gene 2007;396(1):46-58.
2007: Jan Ole Kriegs; Gennady Churakov; Jerzy Jurka; Jürgen Brosius; Jürgen Schmitz
Evolutionary history of 7SL RNA-derived SINEs in Supraprimates.
Trends in genetics : TIG 2007;23(4):158-61.
2007: Mark A Batzer; Prescott L Deininger; Jerzy Jurka; John V Moran
Introduction for the Gene special issue dedicated to the meeting "Genomic impact of eukaryotic transposable elements" at Asilomar.
Gene 2007;390(1-2):1-2.
2007: Jerzy Jurka; Vladimir V Kapitonov; Oleksiy Kohany; Michael V Jurka
Repetitive sequences in complex genomes: structure and evolution.
Annual review of genomics and human genetics 2007;8():241-59.
2007: Natalay Kouprina; Vladimir N Noskov; Adam Pavlicek; N Keith Collins; Pamela D Schoppee Bortz; Chris Ottolenghi; Dmitri Loukinov; Paul Goldsmith; John Risinger; Jung-Hyun Kim; V Anne Westbrook; Greg Solomon; Hanna Sounders; John C Herr; Jerzy Jurka; Victor Lobanenkov; David Schlessinger; Vladimir Larionov
Evolutionary diversification of SPANX-N sperm protein gene structure and expression.
PloS one 2007;2(4):e359.
2006: Marzena Gajecka; Adam Pavlicek; Caron D Glotzbach; Blake C Ballif; Malgorzata Jarmuz; Jerzy Jurka; Lisa Shaffer
Identification of sequence motifs at the breakpoint junctions in three t(1;9)(p36.3;q34) and delineation of mechanisms involved in generating balanced translocations.
Human genetics 2006;120(4):519-26.
2006: Yijun Qi; Xingyue He; Xiu-Jie Wang; Oleksiy Kohany; Jerzy Jurka; Gregory J Hannon
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.
Nature 2006;443(7114):1008-12.
2006: Vladimir V Kapitonov; Jerzy Jurka
Self-synthesizing DNA transposons in eukaryotes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(12):4540-5.
2006: Adam Pavlicek; Andrew Gentles; Jan Paces; Václav Paces; Jerzy Jurka
Retroposition of processed pseudogenes: the impact of RNA stability and translational control.
Trends in genetics : TIG 2006;22(2):69-73.
2006: Jerzy Jurka; Andrew Gentles
Origin and diversification of minisatellites derived from human Alu sequences.
Gene 2006;365():21-6.
2006: Oleksiy Kohany; Andrew Gentles; Lukasz Hankus; Jerzy Jurka
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.
BMC bioinformatics 2006;7():474.
2006: Adam Pavlicek; Jerzy Jurka
Positive selection on the nonhomologous end-joining factor Cernunnos-XLF in the human lineage.
Biology direct 2006;1():15.
2005: Adam Pavlicek; Reniqua House; Andrew Gentles; Jerzy Jurka; Bernice E Morrow
Traffic of genetic information between segmental duplications flanking the typical 22q11.2 deletion in velo-cardio-facial syndrome/DiGeorge syndrome.
Genome research 2005;15(11):1487-95.
2005: Natalay Kouprina; Adam Pavlicek; Vladimir N Noskov; Greg Solomon; John Otstot; William B Isaacs; John D Carpten; Jeffrey M. Trent; Johanna Schleutker; J Carl Barrett; Jerzy Jurka; Vladimir Larionov
Dynamic structure of the SPANX gene cluster mapped to the prostate cancer susceptibility locus HPCX at Xq27.
Genome research 2005;15(11):1477-86.
2005: Andrew Gentles; Oleksiy Kohany; Jerzy Jurka
Evolutionary diversity and potential recombinogenic role of integration targets of Non-LTR retrotransposons.
Molecular biology and evolution 2005;22(10):1983-91.
2005: Natalay Kouprina; Adam Pavlicek; N Keith Collins; Megumi Nakano; Vladimir N Noskov; Jun-ichirou Ohzeki; Ganeshwaran H Mochida; John Risinger; Paul Goldsmith; Michele Gunsior; Greg Solomon; William Gersch; Jung-Hyun Kim; J Carl Barrett; Christopher Walsh; Jerzy Jurka; Hiroshi Masumoto; Vladimir Larionov
The microcephaly ASPM gene is expressed in proliferating tissues and encodes for a mitotic spindle protein.
Human molecular genetics 2005;14(15):2155-65.
2005: Vladimir V Kapitonov; Jerzy Jurka
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons.
PLoS biology 2005;3(6):e181.
2005: Jerzy Jurka; Vladimir V Kapitonov; Adam Pavlicek; P Klonowski; Oleksiy Kohany; J Walichiewicz
Repbase Update, a database of eukaryotic repetitive elements.
Cytogenetic and genome research 2005;110(1-4):462-7.
2005: Jerzy Jurka; Oleksiy Kohany; Adam Pavlicek; Vladimir V Kapitonov; Michael V Jurka
Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons.
Cytogenetic and genome research 2005;110(1-4):117-23.
2005: Abdel Halim Salem; David A Ray; Dale Hedges; Jerzy Jurka; Mark A Batzer
Analysis of the human Alu Ye lineage.
BMC evolutionary biology 2005;5():18.
2004: Jerzy Jurka
Evolutionary impact of human Alu repetitive elements.
Current opinion in genetics & development 2004;14(6):603-8.
2004: Adam Pavlicek; Vladimir N Noskov; Natalay Kouprina; J Carl Barrett; Jerzy Jurka; Vladimir Larionov
Evolution of the tumor suppressor BRCA1 locus in primates: implications for cancer predisposition.
Human molecular genetics 2004;13(22):2737-51.
2004: Vladimir V Kapitonov; Jerzy Jurka
Harbinger transposons and an ancient HARBI1 gene derived from a transposase.
DNA and cell biology 2004;23(5):311-24.
2004: Natalay Kouprina; Adam Pavlicek; Ganeshwaran H Mochida; Greg Solomon; William Gersch; Young-Ho Yoon; Randall V Collura; Maryellen Ruvolo; J Carl Barrett; C Geoffrey Woods; Christopher Walsh; Jerzy Jurka; Vladimir Larionov
Accelerated evolution of the ASPM gene controlling brain size begins prior to human brain expansion.
PLoS biology 2004;2(5):E126.
2004: Jerzy Jurka; Oleksiy Kohany; Adam Pavlicek; Vladimir V Kapitonov; Michael V Jurka
Duplication, coclustering, and selection of human Alu retrotransposons.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(5):1268-72.
2004: Jan Paces; Adam Pavlícek; Radek Zika; Vladimir V Kapitonov; Jerzy Jurka; Václav Paces
HERVd: the Human Endogenous RetroViruses Database: update.
Nucleic acids research 2004;32(Database issue):D50.
2003: Melanie Babcock; Adam Pavlicek; Elizabeth Spiteri; Catherine D Kashork; Ilya P Ioshikhes; Lisa Shaffer; Jerzy Jurka; Bernice E Morrow
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution.
Genome research 2003;13(12):2519-32.
2003: Karla Johanning; Claudina Alemán Stevenson; Oluwatosin O Oyeniran; Yair M Gozal; Astrid M Roy-Engel; Jerzy Jurka; Prescott L Deininger
Potential for retroposition by old Alu subfamilies.
Journal of molecular evolution 2003;56(6):658-64.
2003: Vladimir V Kapitonov; Jerzy Jurka
Molecular paleontology of transposable elements in the Drosophila melanogaster genome.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(11):6569-74.
2003: Vladimir V Kapitonov; Jerzy Jurka
A novel class of SINE elements derived from 5S rRNA.
Molecular biology and evolution 2003;20(5):694-702.
2003: Jinchuan Xing; Abdel Halim Salem; Dale Hedges; Gail E Kilroy; W Scott Watkins; John E Schienman; Caro-Beth Stewart; Jerzy Jurka; Lynn B Jorde; Mark A Batzer
Comprehensive analysis of two Alu Yd subfamilies.
Journal of molecular evolution 2003;57 Suppl 1():S76-89.
2003: Vladimir V Kapitonov; Jerzy Jurka
The esterase and PHD domains in CR1-like non-LTR retrotransposons.
Molecular biology and evolution 2003;20(1):38-46.
2002: Jerzy Jurka; Milovan Krnjajic; Vladimir V Kapitonov; Judith E Stenger; Oleksiy Kokhanyy
Active Alu elements are passed primarily through paternal germlines.
Theoretical population biology 2002;61(4):519-30.
2002: Chingfer Chen; Andrew Gentles; Jerzy Jurka; Samuel Karlin
Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(5):2930-5.
2001: Jerzy Jurka; Vladimir V Kapitonov
PIFs meet Tourists and Harbingers: a superfamily reunion.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(22):12315-6.
2001: Vladimir V Kapitonov; Jerzy Jurka
Rolling-circle transposons in eukaryotes.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(15):8714-9.
2001: Vladimir Yurjevich Kuryshev; Boris Skryabin; Joachim Kremerskothen; Jerzy Jurka; Jürgen Brosius
Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage.
Journal of molecular biology 2001;309(5):1049-66.
2001: J E Stenger; Kirill S Lobachev; Dmitry A Gordenin; T A Darden; Jerzy Jurka; Michael A Resnick
Biased distribution of inverted and direct Alus in the human genome: implications for insertion, exclusion, and genome stability.
Genome research 2001;11(1):12-27.
2000: Jerzy Jurka
Repbase update: a database and an electronic journal of repetitive elements.
Trends in genetics : TIG 2000;16(9):418-20.
2000: Kirill S Lobachev; J E Stenger; O G Kozyreva; Jerzy Jurka; Dmitry A Gordenin; Michael A Resnick
Inverted Alu repeats unstable in yeast are excluded from the human genome.
The EMBO journal 2000;19(14):3822-30.
1999: Vladimir V Kapitonov; Jerzy Jurka
The long terminal repeat of an endogenous retrovirus induces alternative splicing and encodes an additional carboxy-terminal sequence in the human leptin receptor.
Journal of molecular evolution 1999;48(2):248-51.
1999: Jerzy Jurka; Vladimir V Kapitonov
Sectorial mutagenesis by transposable elements.
Genetica 1999;107(1-3):239-48.
1999: Vladimir V Kapitonov; Jerzy Jurka
Molecular paleontology of transposable elements from Arabidopsis thaliana.
Genetica 1999;107(1-3):27-37.
1998: Boris Skryabin; Joachim Kremerskothen; D Vassilacopoulou; T R Disotell; Vladimir V Kapitonov; Jerzy Jurka; Jürgen Brosius
The BC200 RNA gene and its neural expression are conserved in Anthropoidea (Primates).
Journal of molecular evolution 1998;47(6):677-85.
1998: Jerzy Jurka
Repeats in genomic DNA: mining and meaning.
Current opinion in structural biology 1998;8(3):333-7.
1998: Vladimir V Kapitonov; Gerald P Holmquist; Jerzy Jurka
L1 repeat is a basic unit of heterochromatin satellites in cetaceans.
Molecular biology and evolution 1998;15(5):611-2.
1998: Jerzy Jurka; P Klonowski; E N Trifonov
Mammalian retroposons integrate at kinkable DNA sites.
Journal of biomolecular structure & dynamics 1998;15(4):717-21.
1998: Vladimir V Kapitonov; Jerzy Jurka
MER53, a non-autonomous DNA transposon associated with a variety of functionally related defense genes in the human genome.
DNA sequence : the journal of DNA sequencing and mapping 1998;8(5):277-88.
1998: Gerald P Holmquist; Vladimir V Kapitonov; Jerzy Jurka
Mobile genetic elements, chiasmata, and the unique organization of beta-heterochromatin.
Cytogenetics and cell genetics 1998;80(1-4):113-6.
1997: Jerzy Jurka
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(5):1872-7.
1996: Jerzy Jurka; P Klonowski
Integration of retroposable elements in mammals: selection of target sites.
Journal of molecular evolution 1996;43(6):685-9.
1996: Jerzy Jurka; P Klonowski; V Dagman; P Pelton
CENSOR--a program for identification and elimination of repetitive elements from DNA sequences.
Computers & chemistry 1996;20(1):119-21.
1996: Jerzy Jurka; Vladimir V Kapitonov; P Klonowski; J Walichiewicz; A F Smit
Identification of new medium reiteration frequency repeats in the genomes of Primates, Rodentia and Lagomorpha.
Genetica 1996;98(3):235-47.
1996: Vladimir V Kapitonov; Jerzy Jurka
The age of Alu subfamilies.
Journal of molecular evolution 1996;42(1):59-65.
1996: M A Batzer; Prescott L Deininger; U Hellmann-Blumberg; Jerzy Jurka; Damian Labuda; C M Rubin; Carl W Schmid; Ewa Zietkiewicz; E Zuckerkandl
Standardized nomenclature for Alu repeats.
Journal of molecular evolution 1996;42(1):3-6.
1995: A F Smit; Gábor Tóth; Arthur D Riggs; Jerzy Jurka
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
Journal of molecular biology 1995;246(3):401-417.
1995: Jerzy Jurka; C Pethiyagoda
Simple repetitive DNA sequences from primates: compilation and analysis.
Journal of molecular evolution 1995;40(2):120-6.
1995: Jerzy Jurka; Ewa Zietkiewicz; Damian Labuda
Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.
Nucleic acids research 1995;23(1):170-5.
1994: Ewa Zietkiewicz; Chantal Richer; W Makalowski; Jerzy Jurka; Damian Labuda
A young Alu subfamily amplified independently in human and African great apes lineages.
Nucleic acids research 1994;22(25):5608-12.
1994: Gábor Tóth; Jerzy Jurka
Repetitive DNA in and around translocation breakpoints of the Philadelphia chromosome.
Gene 1994;140(2):285-8.
1993: A Milosavljević; Jerzy Jurka
Discovering simple DNA sequences by the algorithmic significance method.
Computer applications in the biosciences : CABIOS 1993;9(4):407-11.
1993: Jerzy Jurka
A new subfamily of recently retroposed human Alu repeats.
Nucleic acids research 1993;21(9):2252.
1993: Jerzy Jurka; D J Kaplan; C H Duncan; J Walichiewicz; A Milosavljevic; G Murali; J F Solus
Identification and characterization of new human medium reiteration frequency repeats.
Nucleic acids research 1993;21(5):1273-9.
1992: Jerzy Jurka; J Walichiewicz; A Milosavljevic
Prototypic sequences for human repetitive DNA.
Journal of molecular evolution 1992;35(4):286-91.
1991: M A Ali; D McWeeney; A Milosavljevic; Jerzy Jurka; R J Jariwalla
Enhanced malignant transformation induced by expression of a distinct protein domain of ribonucleotide reductase large subunit from herpes simplex virus type 2.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(18):8257-61.
1991: D J Kaplan; Jerzy Jurka; J F Solus; C H Duncan
Medium reiteration frequency repetitive sequences in the human genome.
Nucleic acids research 1991;19(17):4731-8.
1991: Jerzy Jurka; E Zuckerkandl
Free left arms as precursor molecules in the evolution of Alu sequences.
Journal of molecular evolution 1991;33(1):49-56.
1991: Jerzy Jurka; A Milosavljevic
Reconstruction and analysis of human Alu genes.
Journal of molecular evolution 1991;32(2):105-21.
1990: Jerzy Jurka
Novel families of interspersed repetitive elements from the human genome.
Nucleic acids research 1990;18(1):137-41.
1989: E Zuckerkandl; G Latter; Jerzy Jurka
Maintenance of function without selection: Alu sequences as "cheap genes".
Journal of molecular evolution 1989;29(6):504-12.
1989: Jerzy Jurka
Subfamily structure and evolution of the human L1 family of repetitive sequences.
Journal of molecular evolution 1989;29(6):496-503.
1988: Jerzy Jurka; T Smith
A fundamental division in the Alu family of repeated sequences.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(13):4775-8.
1988: Jerzy Jurka; T F Smith; Damian Labuda
Small cytoplasmic Ro RNA pseudogene and an Alu repeat in the human alpha-1 globin gene.
Nucleic acids research 1988;16(2):766.