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Jerzy Jurka
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Research Profile (preview)
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Chemicals & Drugs
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Network (preview)
29
Kapitonov, Vladimir
13
Pavlicek, Adam
9
Kohany, Oleksiy
8
Gentles, Andrew
5
Kouprina, Natalay
5
Labuda, Damian
5
Larionov, Vladimir
4
Noskov, Vladimir
4
Barrett, Carl
4
Batzer, Mark
4
Solomon, Greg
3
Zietkiewicz, Ewa
3
Brosius, Jürgen
3
Jurka, Michael
3
Deininger, Prescott
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All Publications
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2009: Kapitonov Vladimir V; Tempel Sébastien; Jurka Jerzy
Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences.
Gene 2009;448(2):207-13.
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2009: Bao Weidong; Jurka Matthew G; Kapitonov Vladimir V; Jurka Jerzy
New superfamilies of eukaryotic DNA transposons and their internal divisions.
Molecular biology and evolution 2009;26(5):983-93.
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2008: Kapitonov Vladimir V; Jurka Jerzy
A universal classification of eukaryotic transposable elements implemented in Repbase.
Nature reviews. Genetics 2008;9(5):411-2; author reply 414.
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2008: Sinzelle Ludivine; Kapitonov Vladimir V; Grzela Dawid P; Jursch Tobias; Jurka Jerzy; Izsvák Zsuzsanna; Ivics Zoltán
Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(12):4715-20.
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2008: Tempel Sébastien; Jurka Matthew; Jurka Jerzy
VisualRepbase: an interface for the study of occurrences of transposable element families.
BMC bioinformatics 2008;9():345.
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2007: Yotova Vania; Lefebvre Jean-François; Kohany Oleksiy; Jurka Jerzy; Michalski Roman; Modiano David; Utermann Gerd; Williams Scott M; Labuda Damian
Tracing genetic history of modern humans using X-chromosome lineages.
Human genetics 2007;122(5):431-43.
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2007: Kapitonov Vladimir V; Jurka Jerzy
Helitrons on a roll: eukaryotic rolling-circle transposons.
Trends in genetics : TIG 2007;23(10):521-9.
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2007: Putnam Nicholas H; Srivastava Mansi; Hellsten Uffe; Dirks Bill; Chapman Jarrod; Salamov Asaf; Terry Astrid; Shapiro Harris; Lindquist Erika; Kapitonov Vladimir V; Jurka Jerzy; Genikhovich Grigory; Grigoriev Igor V; Lucas Susan M; Steele Robert E; Finnerty John R; Technau Ulrich; Martindale Mark Q; Rokhsar Daniel S
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
Science (New York, N.Y.) 2007;317(5834):86-94.
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2007: Gentles Andrew J; Wakefield Matthew J; Kohany Oleksiy; Gu Wanjun; Batzer Mark A; Pollock David D; Jurka Jerzy
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
Genome research 2007;17(7):992-1004.
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2007: Gu Wanjun; Ray David A; Walker Jerilyn A; Barnes Erin W; Gentles Andrew J; Samollow Paul B; Jurka Jerzy; Batzer Mark A; Pollock David D
SINEs, evolution and genome structure in the opossum.
Gene 2007;396(1):46-58.
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2007: Kriegs Jan Ole; Churakov Gennady; Jurka Jerzy; Brosius Jürgen; Schmitz Jürgen
Evolutionary history of 7SL RNA-derived SINEs in Supraprimates.
Trends in genetics : TIG 2007;23(4):158-61.
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2007: Batzer Mark A; Deininger Prescott L; Jurka Jerzy; Moran John V
Introduction for the Gene special issue dedicated to the meeting "Genomic impact of eukaryotic transposable elements" at Asilomar.
Gene 2007;390(1-2):1-2.
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2007: Jurka Jerzy; Kapitonov Vladimir V; Kohany Oleksiy; Jurka Michael V
Repetitive sequences in complex genomes: structure and evolution.
Annual review of genomics and human genetics 2007;8():241-59.
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2007: Kouprina Natalay; Noskov Vladimir N; Pavlicek Adam; Collins N Keith; Schoppee Bortz Pamela D; Ottolenghi Chris; Loukinov Dmitri; Goldsmith Paul; Risinger John I; Kim Jung-Hyun; Westbrook V Anne; Solomon Gregory; Sounders Hanna; Herr John C; Jurka Jerzy; Lobanenkov Victor; Schlessinger David; Larionov Vladimir
Evolutionary diversification of SPANX-N sperm protein gene structure and expression.
PloS one 2007;2(4):e359.
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2006: Gajecka Marzena; Pavlicek Adam; Glotzbach Caron D; Ballif Blake C; Jarmuz Malgorzata; Jurka Jerzy; Shaffer Lisa G
Identification of sequence motifs at the breakpoint junctions in three t(1;9)(p36.3;q34) and delineation of mechanisms involved in generating balanced translocations.
Human genetics 2006;120(4):519-26.
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2006: Qi Yijun; He Xingyue; Wang Xiu-Jie; Kohany Oleksiy; Jurka Jerzy; Hannon Gregory J
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.
Nature 2006;443(7114):1008-12.
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2006: Kapitonov Vladimir V; Jurka Jerzy
Self-synthesizing DNA transposons in eukaryotes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(12):4540-5.
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2006: Pavlicek Adam; Gentles Andrew J; Paces Jan; Paces Václav; Jurka Jerzy
Retroposition of processed pseudogenes: the impact of RNA stability and translational control.
Trends in genetics : TIG 2006;22(2):69-73.
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2006: Jurka Jerzy; Gentles Andrew J
Origin and diversification of minisatellites derived from human Alu sequences.
Gene 2006;365():21-6.
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2006: Kohany Oleksiy; Gentles Andrew J; Hankus Lukasz; Jurka Jerzy
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.
BMC bioinformatics 2006;7():474.
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2006: Pavlicek Adam; Jurka Jerzy
Positive selection on the nonhomologous end-joining factor Cernunnos-XLF in the human lineage.
Biology direct 2006;1():15.
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2005: Pavlicek Adam; House Reniqua; Gentles Andrew J; Jurka Jerzy; Morrow Bernice E
Traffic of genetic information between segmental duplications flanking the typical 22q11.2 deletion in velo-cardio-facial syndrome/DiGeorge syndrome.
Genome research 2005;15(11):1487-95.
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2005: Kouprina Natalay; Pavlicek Adam; Noskov Vladimir N; Solomon Greg; Otstot John; Isaacs William; Carpten John D; Trent Jeffrey M; Schleutker Joanna; Barrett J Carl; Jurka Jerzy; Larionov Vladimir
Dynamic structure of the SPANX gene cluster mapped to the prostate cancer susceptibility locus HPCX at Xq27.
Genome research 2005;15(11):1477-86.
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2005: Gentles Andrew J; Kohany Oleksiy; Jurka Jerzy
Evolutionary diversity and potential recombinogenic role of integration targets of Non-LTR retrotransposons.
Molecular biology and evolution 2005;22(10):1983-91.
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2005: Kouprina Natalay; Pavlicek Adam; Collins N Keith; Nakano Megumi; Noskov Vladimir N; Ohzeki Jun-Ichirou; Mochida Ganeshwaran H; Risinger John I; Goldsmith Paul; Gunsior Michelle; Solomon Greg; Gersch William; Kim Jung-Hyun; Barrett J Carl; Walsh Christopher A; Jurka Jerzy; Masumoto Hiroshi; Larionov Vladimir
The microcephaly ASPM gene is expressed in proliferating tissues and encodes for a mitotic spindle protein.
Human molecular genetics 2005;14(15):2155-65.
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2005: Kapitonov Vladimir V; Jurka Jerzy
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons.
PLoS biology 2005;3(6):e181.
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2005: Jurka J; Kapitonov V V; Pavlicek A; Klonowski P; Kohany O; Walichiewicz J
Repbase Update, a database of eukaryotic repetitive elements.
Cytogenetic and genome research 2005;110(1-4):462-7.
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2005: Jurka J; Kohany O; Pavlicek A; Kapitonov V V; Jurka M V
Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons.
Cytogenetic and genome research 2005;110(1-4):117-23.
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2005: Salem Abdel-Halim; Ray David A; Hedges Dale J; Jurka Jerzy; Batzer Mark A
Analysis of the human Alu Ye lineage.
BMC evolutionary biology 2005;5(1):18.
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2004: Jurka Jerzy
Evolutionary impact of human Alu repetitive elements.
Current opinion in genetics & development 2004;14(6):603-8.
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2004: Pavlicek Adam; Noskov Vladimir N; Kouprina Natalay; Barrett J Carl; Jurka Jerzy; Larionov Vladimir
Evolution of the tumor suppressor BRCA1 locus in primates: implications for cancer predisposition.
Human molecular genetics 2004;13(22):2737-51.
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2004: Kapitonov Vladimir V; Jurka Jerzy
Harbinger transposons and an ancient HARBI1 gene derived from a transposase.
DNA and cell biology 2004;23(5):311-24.
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2004: Kouprina Natalay; Pavlicek Adam; Mochida Ganeshwaran H; Solomon Gregory; Gersch William; Yoon Young-Ho; Collura Randall; Ruvolo Maryellen; Barrett J Carl; Woods C Geoffrey; Walsh Christopher A; Jurka Jerzy; Larionov Vladimir
Accelerated evolution of the ASPM gene controlling brain size begins prior to human brain expansion.
PLoS biology 2004;2(5):E126.
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2004: Jurka Jerzy; Kohany Oleksiy; Pavlicek Adam; Kapitonov Vladimir V; Jurka Michael V
Duplication, coclustering, and selection of human Alu retrotransposons.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(5):1268-72.
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2004: Paces Jan; Pavlícek Adam; Zika Radek; Kapitonov Vladimir V; Jurka Jerzy; Paces Václav
HERVd: the Human Endogenous RetroViruses Database: update.
Nucleic acids research 2004;32(Database issue):D50.
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2003: Babcock Melanie; Pavlicek Adam; Spiteri Elizabeth; Kashork Catherine D; Ioshikhes Ilya; Shaffer Lisa G; Jurka Jerzy; Morrow Bernice E
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution.
Genome research 2003;13(12):2519-32.
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2003: Johanning Karla; Stevenson Claudina Alemán; Oyeniran Oluwatosin O; Gozal Yair M; Roy-Engel Astrid M; Jurka Jerzy; Deininger Prescott L
Potential for retroposition by old Alu subfamilies.
Journal of molecular evolution 2003;56(6):658-64.
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2003: Kapitonov Vladimir V; Jurka Jerzy
Molecular paleontology of transposable elements in the Drosophila melanogaster genome.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(11):6569-74.
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2003: Kapitonov Vladimir V; Jurka Jerzy
A novel class of SINE elements derived from 5S rRNA.
Molecular biology and evolution 2003;20(5):694-702.
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2003: Kapitonov Vladimir V; Jurka Jerzy
The esterase and PHD domains in CR1-like non-LTR retrotransposons.
Molecular biology and evolution 2003;20(1):38-46.
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2003: Xing Jinchuan; Salem Abdel-Halim; Hedges Dale J; Kilroy Gail E; Watkins W Scott; Schienman John E; Stewart Caro-Beth; Jurka Jerzy; Jorde Lynn B; Batzer Mark A
Comprehensive analysis of two Alu Yd subfamilies.
Journal of molecular evolution 2003;57 Suppl 1():S76-89.
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2002: Jurka Jerzy; Krnjajic Milovan; Kapitonov Vladimir V; Stenger Judith E; Kokhanyy Oleksiy
Active Alu elements are passed primarily through paternal germlines.
Theoretical population biology 2002;61(4):519-30.
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2002: Chen Chingfer; Gentles Andrew J; Jurka Jerzy; Karlin Samuel
Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(5):2930-5.
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2001: Jurka J; Kapitonov V V
PIFs meet Tourists and Harbingers: a superfamily reunion.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(22):12315-6.
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2001: Kapitonov V V; Jurka J
Rolling-circle transposons in eukaryotes.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(15):8714-9.
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2001: Kuryshev V Y; Skryabin B V; Kremerskothen J; Jurka J; Brosius J
Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage.
Journal of molecular biology 2001;309(5):1049-66.
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2001: Stenger J E; Lobachev K S; Gordenin D; Darden T A; Jurka J; Resnick M A
Biased distribution of inverted and direct Alus in the human genome: implications for insertion, exclusion, and genome stability.
Genome research 2001;11(1):12-27.
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2000: Jurka J
Repbase update: a database and an electronic journal of repetitive elements.
Trends in genetics : TIG 2000;16(9):418-20.
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2000: Lobachev K S; Stenger J E; Kozyreva O G; Jurka J; Gordenin D A; Resnick M A
Inverted Alu repeats unstable in yeast are excluded from the human genome.
The EMBO journal 2000;19(14):3822-30.
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1999: Kapitonov V V; Jurka J
The long terminal repeat of an endogenous retrovirus induces alternative splicing and encodes an additional carboxy-terminal sequence in the human leptin receptor.
Journal of molecular evolution 1999;48(2):248-51.
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1999: Jurka J; Kapitonov V V
Sectorial mutagenesis by transposable elements.
Genetica 1999;107(1-3):239-48.
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1999: Kapitonov V V; Jurka J
Molecular paleontology of transposable elements from Arabidopsis thaliana.
Genetica 1999;107(1-3):27-37.
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1998: Skryabin B V; Kremerskothen J; Vassilacopoulou D; Disotell T R; Kapitonov V V; Jurka J; Brosius J
The BC200 RNA gene and its neural expression are conserved in Anthropoidea (Primates).
Journal of molecular evolution 1998;47(6):677-85.
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1998: Jurka J
Repeats in genomic DNA: mining and meaning.
Current opinion in structural biology 1998;8(3):333-7.
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1998: Kapitonov V V; Holmquist G P; Jurka J
L1 repeat is a basic unit of heterochromatin satellites in cetaceans.
Molecular biology and evolution 1998;15(5):611-2.
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1998: Jurka J; Klonowski P; Trifonov E N
Mammalian retroposons integrate at kinkable DNA sites.
Journal of biomolecular structure & dynamics 1998;15(4):717-21.
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1998: Kapitonov V V; Jurka J
MER53, a non-autonomous DNA transposon associated with a variety of functionally related defense genes in the human genome.
DNA sequence : the journal of DNA sequencing and mapping 1998;8(5):277-88.
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1998: Holmquist G P; Kapitonov V V; Jurka J
Mobile genetic elements, chiasmata, and the unique organization of beta-heterochromatin.
Cytogenetics and cell genetics 1998;80(1-4):113-6.
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1997: Jurka J
Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(5):1872-7.
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1996: Jurka J; Klonowski P
Integration of retroposable elements in mammals: selection of target sites.
Journal of molecular evolution 1996;43(6):685-9.
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1996: Jurka J; Klonowski P; Dagman V; Pelton P
CENSOR--a program for identification and elimination of repetitive elements from DNA sequences.
Computers & chemistry 1996;20(1):119-21.
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1996: Kapitonov V; Jurka J
The age of Alu subfamilies.
Journal of molecular evolution 1996;42(1):59-65.
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1996: Batzer M A; Deininger P L; Hellmann-Blumberg U; Jurka J; Labuda D; Rubin C M; Schmid C W; Zietkiewicz E; Zuckerkandl E
Standardized nomenclature for Alu repeats.
Journal of molecular evolution 1996;42(1):3-6.
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1996: Jurka J; Kapitonov V V; Klonowski P; Walichiewicz J; Smit A F
Identification of new medium reiteration frequency repeats in the genomes of Primates, Rodentia and Lagomorpha.
Genetica 1996;98(3):235-47.
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1995: Smit A F; Tóth G; Riggs A D; Jurka J
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences.
Journal of molecular biology 1995;246(3):401-417.
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1995: Jurka J; Pethiyagoda C
Simple repetitive DNA sequences from primates: compilation and analysis.
Journal of molecular evolution 1995;40(2):120-6.
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1995: Jurka J; Zietkiewicz E; Labuda D
Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.
Nucleic acids research 1995;23(1):170-5.
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1994: Zietkiewicz E; Richer C; Makalowski W; Jurka J; Labuda D
A young Alu subfamily amplified independently in human and African great apes lineages.
Nucleic acids research 1994;22(25):5608-12.
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1994: Tóth G; Jurka J
Repetitive DNA in and around translocation breakpoints of the Philadelphia chromosome.
Gene 1994;140(2):285-8.
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1993: Milosavljevic A; Jurka J
Discovering simple DNA sequences by the algorithmic significance method.
Computer applications in the biosciences : CABIOS 1993;9(4):407-11.
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1993: Jurka J
A new subfamily of recently retroposed human Alu repeats.
Nucleic acids research 1993;21(9):2252.
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1993: Jurka J; Kaplan D J; Duncan C H; Walichiewicz J; Milosavljevic A; Murali G; Solus J F
Identification and characterization of new human medium reiteration frequency repeats.
Nucleic acids research 1993;21(5):1273-9.
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1992: Jurka J; Walichiewicz J; Milosavljevic A
Prototypic sequences for human repetitive DNA.
Journal of molecular evolution 1992;35(4):286-91.
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1991: Kaplan D J; Jurka J; Solus J F; Duncan C H
Medium reiteration frequency repetitive sequences in the human genome.
Nucleic acids research 1991;19(17):4731-8.
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1991: Ali M A; McWeeney D; Milosavljevic A; Jurka J; Jariwalla R J
Enhanced malignant transformation induced by expression of a distinct protein domain of ribonucleotide reductase large subunit from herpes simplex virus type 2.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(18):8257-61.
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1991: Jurka J; Zuckerkandl E
Free left arms as precursor molecules in the evolution of Alu sequences.
Journal of molecular evolution 1991;33(1):49-56.
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1991: Jurka J; Milosavljevic A
Reconstruction and analysis of human Alu genes.
Journal of molecular evolution 1991;32(2):105-21.
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1990: Jurka J
Novel families of interspersed repetitive elements from the human genome.
Nucleic acids research 1990;18(1):137-41.
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1989: Zuckerkandl E; Latter G; Jurka J
Maintenance of function without selection: Alu sequences as "cheap genes".
Journal of molecular evolution 1989;29(6):504-12.
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1989: Jurka J
Subfamily structure and evolution of the human L1 family of repetitive sequences.
Journal of molecular evolution 1989;29(6):496-503.
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1988: Jurka J; Smith T
A fundamental division in the Alu family of repeated sequences.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(13):4775-8.
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1988: Jurka J; Smith T F; Labuda D
Small cytoplasmic Ro RNA pseudogene and an Alu repeat in the human alpha-1 globin gene.
Nucleic acids research 1988;16(2):766.
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