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Shigehiro Kamitori

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Yasuhiro Nonaka; Takashi Ogawa; Souichi Oomizu; Nozomu Nishi; Mitsuomi Hirashima; Shigehiro Kamitori; Shin-Ichi Nakakita; Takanori Nakamura
Self-association of the galectin-9 C-terminal domain via the opposite surface of the sugar-binding site.
Hiromi Yoshida; Aiko Itoh; Shin-ichi Nakakita; Nozomu Nishi; Misa Teraoka; Satoshi Yamashita; Shigehiro Kamitori
X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains.
Satoshi Yamashita; Hiromi Yoshida; Shin-ichi Nakakita; Yukari Nakakita; Atsushi Nishikawa; Keiji Oguma; Takashi Tonozuka; Noboru Uchiyama; Shigehiro Kamitori
Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides.

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2013: Yasuhiro Nonaka; Takashi Ogawa; Souichi Oomizu; Nozomu Nishi; Mitsuomi Hirashima; Shigehiro Kamitori; Shin-Ichi Nakakita; Takanori Nakamura
Self-association of the galectin-9 C-terminal domain via the opposite surface of the sugar-binding site.
Journal of biochemistry 2013;153(5):463-71.
2012: Hiromi Yoshida; Aiko Itoh; Shin-ichi Nakakita; Nozomu Nishi; Misa Teraoka; Satoshi Yamashita; Shigehiro Kamitori
X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains.
The FEBS journal 2012;279(20):3937-51.
2012: Satoshi Yamashita; Hiromi Yoshida; Shin-ichi Nakakita; Yukari Nakakita; Atsushi Nishikawa; Keiji Oguma; Takashi Tonozuka; Noboru Uchiyama; Shigehiro Kamitori
Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides.
FEBS letters 2012;586(16):2404-10.
2011: Hiromi Yoshida; Akihide Yoshihara; Ken Izumori; Misa Teraoka; Shigehiro Kamitori
Overexpression, crystallization and preliminary X-ray diffraction analysis of L-ribose isomerase from Acinetobacter sp. strain DL-28.
Acta crystallographica. Section F, Structural biology and crystallization communications 2011;67(Pt 10):1281-4.
2011: Shigehiro Kamitori; Atsushi Ueda; Yasuhiro Tahara; Hiromi Yoshida; Tomohiko Ishii; Jun'ichi Uenishi
Crystal structures of rare disaccharides, α-D-glucopyranosyl β-D-psicofuranoside, and α-D-galactopyranosyl β-D-psicofuranoside.
Carbohydrate research 2011;346(9):1182-5.
2011: Hirotoshi Matsumura; Keisuke Matsuda; Nobuhumi Nakamura; Akashi Ohtaki; Hiromi Yoshida; Shigehiro Kamitori; Masafumi Yohda; Hiroyuki Ohno
Monooxygenation by a thermophilic cytochrome P450 via direct electron donation from NADH.
Metallomics : integrated biometal science 2011;3(4):389-95.
2010: Hiromi Yoshida; Kosei Takeda; Ken Izumori; Shigehiro Kamitori
Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase.
Protein engineering, design & selection : PEDS 2010;23(12):919-27.
2010: Hiromi Yoshida; Misa Teraoka; Nozomu Nishi; Shin-ichi Nakakita; Takanori Nakamura; Mitsuomi Hirashima; Shigehiro Kamitori
X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose.
The Journal of biological chemistry 2010;285(47):36969-76.
2010: Kosei Takeda; Hiromi Yoshida; Ken Izumori; Shigehiro Kamitori
X-ray structures of Bacillus pallidus d-arabinose isomerase and its complex with l-fucitol.
Biochimica et biophysica acta 2010;1804(6):1359-68.
2010: Hiromi Yoshida; Masatsugu Yamaji; Tomohiko Ishii; Ken Izumori; Shigehiro Kamitori
Catalytic reaction mechanism of Pseudomonas stutzeri L-rhamnose isomerase deduced from X-ray structures.
The FEBS journal 2010;277(4):1045-57.
2009: Hiromi Yoshida; Shigehiro Kamitori
[Catalytic reaction mechanisms of the enzymes producing rare sugars based on X-ray structures].
Seikagaku. The Journal of Japanese Biochemical Society 2009;81(9):811-5.
2009: Jun Kobayashi; Hiromi Yoshida; Huy Nhat Chu; Yu Yoshikane; Shigehiro Kamitori; Toshiharu Yagi
Crystallization and preliminary X-ray analysis of AAMS amidohydrolase, the final enzyme in degradation pathway I of pyridoxine.
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 8):829-31.
2009: Naoki Matsumoto; Mitsugu Yamada; Yuma Kurakata; Hiromi Yoshida; Shigehiro Kamitori; Atsushi Nishikawa; Takashi Tonozuka
Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein.
The FEBS journal 2009;276(11):3008-19.
2009: Hiromi Yoshida; Nozomu Nishi; Shin-ichi Nakakita; Shigehiro Kamitori
Crystallization and preliminary X-ray diffraction analysis of a protease-resistant mutant form of human galectin-8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 5):512-4.
2009: Yuji Watanabe; Hiromi Yoshida; Kosei Takeda; Tomohiko Ishi; Shigehiro Kamitori
β-d-Altrose.
Acta crystallographica. Section E, Structure reports online 2009;65(Pt 2):o280.
2008: Nozomu Nishi; Akemi Abe; Jun Iwaki; Hiromi Yoshida; Aiko Itoh; Hiroki Shoji; Shigehiro Kamitori; Jun Hirabayashi; Takanori Nakamura
Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1.
Glycobiology 2008;18(12):1065-73.
2008: Kosei Takeda; Hiromi Yoshida; Goro Takada; Ken Izumori; Shigehiro Kamitori
Overexpression, purification, crystallization and preliminary X-ray crystal analysis of Bacillus pallidusD-arabinose isomerase.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 10):945-8.
2008: Yuma Kurakata; Akiko Uechi; Hiromi Yoshida; Shigehiro Kamitori; Yoshiyuki Sakano; Atsushi Nishikawa; Takashi Tonozuka
Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
Journal of molecular biology 2008;381(1):116-28.
2008: Hiromi Yoshida; Mitsugu Yamada; Seiki Kuramitsu; Shigehiro Kamitori
Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472).
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 7):589-92.
2008: Masahiro Mizuno; Atsushi Koide; Akihiro Yamamura; Hiromi Akeboshi; Hiromi Yoshida; Shigehiro Kamitori; Yoshiyuki Sakano; Atsushi Nishikawa; Takashi Tonozuka
Crystal structure of Aspergillus niger isopullulanase, a member of glycoside hydrolase family 49.
Journal of molecular biology 2008;376(1):210-20.
2007: Hiromi Yoshida; Mitsugu Yamada; Takeyori Nishitani; Goro Takada; Ken Izumori; Shigehiro Kamitori
Crystal structures of D-tagatose 3-epimerase from Pseudomonas cichorii and its complexes with D-tagatose and D-fructose.
Journal of molecular biology 2007;374(2):443-53.
2007: Takashi Tonozuka; Akiko Sogawa; Mitsugu Yamada; Naoki Matsumoto; Hiromi Yoshida; Shigehiro Kamitori; Kazuhiro Ichikawa; Masahiro Mizuno; Atsushi Nishikawa; Yoshiyuki Sakano
Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein.
The FEBS journal 2007;274(8):2109-20.
2007: Hiromi Yoshida; Mitsugu Yamada; Yuya Ohyama; Goro Takada; Ken Izumori; Shigehiro Kamitori
The structures of L-rhamnose isomerase from Pseudomonas stutzeri in complexes with L-rhamnose and D-allose provide insights into broad substrate specificity.
Journal of molecular biology 2007;365(5):1505-16.
2007: Hiromi Yoshida; Mitsugu Yamada; Takeyori Nishitani; Goro Takada; Ken Izumori; Shigehiro Kamitori
Purification, crystallization and preliminary X-ray diffraction studies of D-tagatose 3-epimerase from Pseudomonas cichorii.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 2):123-5.
2006: Mitsugu Yamada; Keiko Ohsawa; Yoshinori Imai; Shinichi Kohsaka; Shigehiro Kamitori
X-ray structures of the microglia/macrophage-specific protein Iba1 from human and mouse demonstrate novel molecular conformation change induced by calcium binding.
Journal of molecular biology 2006;364(3):449-57.
2006: Akashi Ohtaki; Masahiro Mizuno; Hiromi Yoshida; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft.
Carbohydrate research 2006;341(8):1041-6.
2006: Hiromi Yoshida; Poonperm Wayoon; Goro Takada; Ken Izumori; Shigehiro Kamitori
Crystallization and preliminary X-ray diffraction studies of L-rhamnose isomerase from Pseudomonas stutzeri.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 6):550-2.
2005: Akemi Abe; Hiromi Yoshida; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages.
The FEBS journal 2005;272(23):6145-53.
2005: Shigehiro Kamitori; Akihiro Iguchi; Akashi Ohtaki; Mitsugu Yamada; Keiko Kita
X-ray structures of NADPH-dependent carbonyl reductase from Sporobolomyces salmonicolor provide insights into stereoselective reductions of carbonyl compounds.
Journal of molecular biology 2005;352(3):551-8.
2005: Kazuhiro Ichikawa; Takashi Tonozuka; Masahiro Mizuno; Yoshihiro Tanabe; Shigehiro Kamitori; Atsushi Nishikawa; Yoshiyuki Sakano
Crystallization and preliminary X-ray analysis of Thermoactinomyces vulgaris R-47 maltooligosaccharide-metabolizing enzyme homologous to glucoamylase.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 3):302-4.
2005: Masahiko Miyauchi; Taiki Hoshino; Hiroyasu Yamaguchi; Shigehiro Kamitori; Akira Harada
A [2]rotaxane capped by a cyclodextrin and a guest: formation of supramolecular [2]rotaxane polymer.
Journal of the American Chemical Society 2005;127(7):2034-5.
2004: Akashi Ohtaki; Masahiro Mizuno; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism.
The Journal of biological chemistry 2004;279(30):31033-40.
2004: Yusuke Oku; Akashi Ohtaki; Shigehiro Kamitori; Nobuhumi Nakamura; Masafumi Yohda; Hiroyuki Ohno; Yutaka Kawarabayasi
Structure and direct electrochemistry of cytochrome P450 from the thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7.
Journal of inorganic biochemistry 2004;98(7):1194-9.
2004: Masahiro Mizuno; Takashi Tonozuka; Akiko Uechi; Akashi Ohtaki; Kazuhiro Ichikawa; Shigehiro Kamitori; Atsushi Nishikawa; Yoshiyuki Sakano
The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product.
European journal of biochemistry / FEBS 2004;271(12):2530-8.
2004: Masahiro Mizuno; Takashi Tonozuka; Saori Suzuki; Rie Uotsu-Tomita; Shigehiro Kamitori; Atsushi Nishikawa; Yoshiyuki Sakano
Structural insights into substrate specificity and function of glucodextranase.
The Journal of biological chemistry 2004;279(11):10575-83.
2004: Mitsugu Yamada; Yoshinori Imai; Shinichi Kohsaka; Shigehiro Kamitori
Crystallization and preliminary X-ray crystallographic analysis of macrophage/microglia-specific calcium-binding protein Iba1.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 3):569-71.
2004: Akemi Abe; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 1 with malto-oligosaccharides demonstrate the role of domain N acting as a starch-binding domain.
Journal of molecular biology 2004;335(3):811-22.
2003: Akashi Ohtaki; Akihiro Iguchi; Masahiro Mizuno; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis.
Carbohydrate research 2003;338(15):1553-8.
2003: Shigehiro Kamitori; Masayo Tanaka; Yasuki Akita; Kazuhiro Yamamoto
Crystal structure of chartreusin derivative A132.
Carbohydrate research 2003;338(14):1523-5.
2003: Shigehiro Kamitori; Akashi Ohtaki; Hironori Ino; Michio Takeuchi
Crystal structures of Aspergillus oryzae aspartic proteinase and its complex with an inhibitor pepstatin at 1.9A resolution.
Journal of molecular biology 2003;326(5):1503-11.
2002: Shigehiro Kamitori; Akemi Abe; Akashi Ohtaki; Akira Kaji; Takashi Tonozuka; Yoshiyuki Sakano
Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
Journal of molecular biology 2002;318(2):443-53.
2001: Akashi Ohtaki; S Kondo; Y Shimura; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs.
Carbohydrate research 2001;334(4):309-13.
2001: Shigehiro Kamitori; Y Toyama; O Matsuzaka
Crystal structures of cyclomaltohexaose (alpha-cyclodextrin) complexes with p-bromophenol and m-bromophenol.
Carbohydrate research 2001;332(2):235-40.
2001: T Yokota; Takashi Tonozuka; Y Shimura; Kazuhiro Ichikawa; Shigehiro Kamitori; Yoshiyuki Sakano
Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues.
Bioscience, biotechnology, and biochemistry 2001;65(3):619-26.
2001: S Kondo; Akashi Ohtaki; Takashi Tonozuka; Yoshiyuki Sakano; Shigehiro Kamitori
Studies on the hydrolyzing mechanism for cyclodextrins of Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structure of the mutant E354A complexed with beta-cyclodextrin, and kinetic analyses on cyclodextrins.
Journal of biochemistry 2001;129(3):423-8.
2001: T Yokota; Takashi Tonozuka; Shigehiro Kamitori; Yoshiyuki Sakano
The deletion of amino-terminal domain in Thermoactinomyces vulgaris R-47 alpha-amylases: effects of domain N on activity, specificity, stability and dimerization.
Bioscience, biotechnology, and biochemistry 2001;65(2):401-8.
1999: Shigehiro Kamitori; S Kondo; K Okuyama; T Yokota; Y Shimura; Takashi Tonozuka; Yoshiyuki Sakano
Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution.
Journal of molecular biology 1999;287(5):907-21.
1999: V Nagarajan; Shigehiro Kamitori; K Okuyama
Structure analysis of a collagen-model peptide with a (Pro-Hyp-Gly) sequence repeat.
Journal of biochemistry 1999;125(2):310-8.
1998: V Nagarajan; Shigehiro Kamitori; K Okuyama
Crystal structure analysis of collagen model peptide (Pro-pro-Gly)10.
Journal of biochemistry 1998;124(6):1117-23.