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Hideki Kandori

Research Profile

Procedures

Spectroscopy, Fourier Transform Infrared

Chemicals & Drugs

Phenomena

Occupations

Photochemistry

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Publications

TOP 3
I M Mahaputra Wijaya; Junpei Yamamoto; Yu Zhang; Elizabeth D Getzoff; Kenichi Hitomi; Shigenori Iwai; Tatsuya Iwata; Hideki Kandori
Detection of distinct α-helical rearrangements of cyclobutane pyrimidine dimer photolyase upon substrate binding by Fourier transform infrared spectroscopy.
Louisa Reissig; Makoto Demura; Tatsuya Iwata; Naoki Kamo; Hideki Kandori; Takashi Kikukawa; Yuki Sudo
Influence of halide binding on the hydrogen bonding network in the active site of Salinibacter sensory rhodopsin I.
Keisuke Saito; Hideki Kandori; Hiroshi Ishikita
Factors that differentiate the H-bond strengths of water near the Schiff bases in bacteriorhodopsin and Anabaena sensory rhodopsin.

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2013: I M Mahaputra Wijaya; Junpei Yamamoto; Yu Zhang; Elizabeth D Getzoff; Kenichi Hitomi; Shigenori Iwai; Tatsuya Iwata; Hideki Kandori
Detection of distinct α-helical rearrangements of cyclobutane pyrimidine dimer photolyase upon substrate binding by Fourier transform infrared spectroscopy.
Biochemistry 2013;52(6):1019-27.
2012: Louisa Reissig; Makoto Demura; Tatsuya Iwata; Naoki Kamo; Hideki Kandori; Takashi Kikukawa; Yuki Sudo
Influence of halide binding on the hydrogen bonding network in the active site of Salinibacter sensory rhodopsin I.
Biochemistry 2012;51(44):8802-13.
2012: Keisuke Saito; Hideki Kandori; Hiroshi Ishikita
Factors that differentiate the H-bond strengths of water near the Schiff bases in bacteriorhodopsin and Anabaena sensory rhodopsin.
The Journal of biological chemistry 2012;287(41):34009-18.
2012: Hiroyasu Ito; Leonid S Brown; Ying Fan; Yuji Furutani; Akira Kawanabe; Masayo Sumii; Hideki Kandori
Comparative FTIR study of a new fungal rhodopsin.
The journal of physical chemistry. B 2012;116(39):11881-9.
2012: Daichi Yamada; Yu Zhang; Elizabeth D Getzoff; Kenichi Hitomi; Tatsuya Iwata; Hideki Kandori
Fourier-transform infrared study of the photoactivation process of Xenopus (6-4) photolyase.
Biochemistry 2012;51(29):5774-83.
2012: Kosuke Muroda; Keisuke Nakashima; Mikihiro Shibata; Makoto Demura; Hideki Kandori
Protein-bound water as the determinant of asymmetric functional conversion between light-driven proton and chloride pumps.
Biochemistry 2012;51(23):4677-84.
2012: Keiichi Inoue; Hideki Kandori; Shiori Kobayashi; Louisa Reissig; Makoto Sakai; Masaaki Fujii; Michio Homma; Yuki Sudo
Absorption spectra and photochemical reactions in a unique photoactive protein, middle rhodopsin MR.
The journal of physical chemistry. B 2012;116(20):5888-99.
2012: Tushar Kanti Maiti; Keisuke Yamada; Keiichi Inoue; Hideki Kandori
L105K mutant of proteorhodopsin.
Biochemistry 2012;51(15):3198-204.
2012: Kota Katayama; Yuji Furutani; Hiroo Imai; Hideki Kandori
Protein-bound water molecules in primate red- and green-sensitive visual pigments.
Biochemistry 2012;51(6):1126-33.
2011: Víctor A Lórenz-Fonfría; Hideki Kandori; Esteve Padrós
Probing specific molecular processes and intermediates by time-resolved Fourier transform infrared spectroscopy: application to the bacteriorhodopsin photocycle.
The journal of physical chemistry. B 2011;115(24):7972-85.
2011: Hiroki Irieda; Louisa Reissig; Akira Kawanabe; Michio Homma; Hideki Kandori; Yuki Sudo
Structural characteristics around the β-ionone ring of the retinal chromophore in Salinibacter sensory rhodopsin I.
Biochemistry 2011;50(22):4912-22.
2011: Yu Zhang; Tatsuya Iwata; Junpei Yamamoto; Kenichi Hitomi; Shigenori Iwai; Takeshi Todo; Elizabeth D Getzoff; Hideki Kandori
FTIR study of light-dependent activation and DNA repair processes of (6-4) photolyase.
Biochemistry 2011;50(18):3591-8.
2011: Keiichi Inoue; Yuki Sudo; Michio Homma; Hideki Kandori
Spectrally silent intermediates during the photochemical reactions of Salinibacter sensory rhodopsin I.
The journal of physical chemistry. B 2011;115(15):4500-8.
2011: Aya Nakatsuma; Takahiro Yamashita; Kengo Sasaki; Akira Kawanabe; Keiichi Inoue; Yuji Furutani; Yoshinori Shichida; Hideki Kandori
Chimeric microbial rhodopsins containing the third cytoplasmic loop of bovine rhodopsin.
Biophysical journal 2011;100(8):1874-82.
2011: Yuji Furutani; Takeshi Murata; Hideki Kandori
Sodium or lithium ion-binding-induced structural changes in the K-ring of V-ATPase from Enterococcus hirae revealed by ATR-FTIR spectroscopy.
Journal of the American Chemical Society 2011;133(9):2860-3.
2011: Yuki Sudo; Kunio Ihara; Shiori Kobayashi; Daisuke Suzuki; Hiroki Irieda; Takashi Kikukawa; Hideki Kandori; Michio Homma
A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties.
The Journal of biological chemistry 2011;286(8):5967-76.
2011: Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
An inward proton transport using Anabaena sensory rhodopsin.
Journal of microbiology (Seoul, Korea) 2011;49(1):1-6.
2010: Tatsuya Iwata; Yu Zhang; Kenichi Hitomi; Elizabeth D Getzoff; Hideki Kandori
Key dynamics of conserved asparagine in a cryptochrome/photolyase family protein by fourier transform infrared spectroscopy.
Biochemistry 2010;49(41):8882-91.
2010: Kota Katayama; Yuji Furutani; Hideki Kandori
FTIR study of the photoreaction of bovine rhodopsin in the presence of hydroxylamine.
The journal of physical chemistry. B 2010;114(27):9039-46.
2010: Saburo Neya; Masaaki Suzuki; Tyuji Hoshino; Hirotaka Ode; Kiyohiro Imai; Teruyuki Komatsu; Akira Ikezaki; Mikio Nakamura; Yuji Furutani; Hideki Kandori
Molecular insight into intrinsic heme distortion in ligand binding in hemoprotein.
Biochemistry 2010;49(27):5642-50.
2010: Kyohei Hashimoto; Ah Reum Choi; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Low-temperature FTIR study of Gloeobacter rhodopsin: presence of strongly hydrogen-bonded water and long-range structural protein perturbation upon retinal photoisomerization.
Biochemistry 2010;49(15):3343-50.
2010: Keisuke Yamada; Akira Kawanabe; Hideki Kandori
Importance of alanine at position 178 in proteorhodopsin for absorption of prevalent ambient light in the marine environment.
Biochemistry 2010;49(11):2416-23.
2010: Jin Yagasaki; Daisuke Suzuki; Kunio Ihara; Keiichi Inoue; Takashi Kikukawa; Makoto Sakai; Masaaki Fujii; Michio Homma; Hideki Kandori; Yuki Sudo
Spectroscopic studies of a sensory rhodopsin I homologue from the archaeon Haloarcula vallismortis.
Biochemistry 2010;49(6):1183-90.
2010: Hideki Kandori; Yuki Sudo; Yuji Furutani
Protein-protein interaction changes in an archaeal light-signal transduction.
Journal of biomedicine & biotechnology 2010;2010():424760.
2010: Kota Katayama; Yuji Furutani; Hiroo Imai; Hideki Kandori
An FTIR study of monkey green- and red-sensitive visual pigments.
Angewandte Chemie (International ed. in English) 2010;49(5):891-4.
2009: Yuki Sudo; Yuya Kitade; Yuji Furutani; Masaru Kojima; Seiji Kojima; Michio Homma; Hideki Kandori
Interaction between Na+ ion and carboxylates of the PomA-PomB stator unit studied by ATR-FTIR spectroscopy.
Biochemistry 2009;48(49):11699-705.
2009: Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Engineering an inward proton transport from a bacterial sensor rhodopsin.
Journal of the American Chemical Society 2009;131(45):16439-44.
2009: Yuki Sudo; Akiko Okada; Daisuke Suzuki; Keiichi Inoue; Hiroki Irieda; Makoto Sakai; Masaaki Fujii; Yuji Furutani; Hideki Kandori; Michio Homma
Characterization of a signaling complex composed of sensory rhodopsin I and its cognate transducer protein from the eubacterium Salinibacter ruber.
Biochemistry 2009;48(42):10136-45.
2009: Daisuke Suzuki; Yuji Furutani; Keiichi Inoue; Takashi Kikukawa; Makoto Sakai; Masaaki Fujii; Hideki Kandori; Michio Homma; Yuki Sudo
Effects of chloride ion binding on the photochemical properties of salinibacter sensory rhodopsin I.
Journal of molecular biology 2009;392(1):48-62.
2009: Takayuki Koyama; Tatsuya Iwata; Atsushi Yamamoto; Yoshiaki Sato; Daisuke Matsuoka; Satoru Tokutomi; Hideki Kandori
Different role of the Jalpha helix in the light-induced activation of the LOV2 domains in various phototropins.
Biochemistry 2009;48(32):7621-8.
2009: Keisuke Nakashima; Takumi Nakamura; Satoshi Takeuchi; Mikihiro Shibata; Makoto Demura; Tahei Tahara; Hideki Kandori
Properties of the anion-binding site of pharaonis Halorhodopsin studied by ultrafast pump-probe spectroscopy and low-temperature FTIR spectroscopy.
The journal of physical chemistry. B 2009;113(24):8429-34.
2009: Maiko Yoshitsugu; Junya Yamada; Hideki Kandori
Color-changing mutation in the E-F loop of proteorhodopsin.
Biochemistry 2009;48(20):4324-30.
2009: Víctor A Lórenz-Fonfría; Hideki Kandori
Spectroscopic and kinetic evidence on how bacteriorhodopsin accomplishes vectorial proton transport under functional conditions.
Journal of the American Chemical Society 2009;131(16):5891-901.
2009: Atsushi Yamamoto; Tatsuya Iwata; Yoshiaki Sato; Daisuke Matsuoka; Satoru Tokutomi; Hideki Kandori
Light signal transduction pathway from flavin chromophore to the J alpha helix of Arabidopsis phototropin1.
Biophysical journal 2009;96(7):2771-8.
2009: Yuji Furutani; Hideki Kandori; Masaki Kawano; Koji Nakabayashi; Michito Yoshizawa; Makoto Fujita
In situ spectroscopic, electrochemical, and theoretical studies of the photoinduced host-guest electron transfer that precedes unusual host-mediated alkane photooxidation.
Journal of the American Chemical Society 2009;131(13):4764-8.
2009: Yuya Kitade; Yuji Furutani; Naoki Kamo; Hideki Kandori
Proton release group of pharaonis phoborhodopsin revealed by ATR-FTIR spectroscopy.
Biochemistry 2009;48(7):1595-603.
2009: Tatsuya Iwata; Mark L Paddock; Melvin Y Okamura; Hideki Kandori
Identification of FTIR bands due to internal water molecules around the quinone binding sites in the reaction center from Rhodobacter sphaeroides.
Biochemistry 2009;48(6):1220-9.
2009: Akira Kawanabe; Hideki Kandori
Photoreactions and structural changes of anabaena sensory rhodopsin.
Sensors (Basel, Switzerland) 2009;9(12):9741-804.
2008: Daisuke Suzuki; Yuki Sudo; Yuji Furutani; Hazuki Takahashi; Michio Homma; Hideki Kandori
Structural changes of Salinibacter sensory rhodopsin I upon formation of the K and M photointermediates.
Biochemistry 2008;47(48):12750-9.
2008: Saburo Neya; Masaaki Suzuki; Hirotaka Ode; Tyuji Hoshino; Yuji Furutani; Hideki Kandori; Hiroshi Hori; Kiyohiro Imai; Teruyuki Komatsu
Functional evaluation of iron oxypyriporphyrin in protein heme pocket.
Inorganic chemistry 2008;47(22):10771-8.
2008: Takumi Nakamura; Satoshi Takeuchi; Mikihiro Shibata; Makoto Demura; Hideki Kandori; Tahei Tahara
Ultrafast pump-probe study of the primary photoreaction process in pharaonis halorhodopsin: halide ion dependence and isomerization dynamics.
The journal of physical chemistry. B 2008;112(40):12795-800.
2008: Akira Kawanabe; Yuji Furutani; Sa Ryong Yoon; Kwang-Hwan Jung; Hideki Kandori
FTIR study of the L intermediate of Anabaena sensory rhodopsin: structural changes in the cytoplasmic region.
Biochemistry 2008;47(38):10033-40.
2008: Tomomi Kitajima-Ihara; Yuji Furutani; Daisuke Suzuki; Kunio Ihara; Hideki Kandori; Michio Homma; Yuki Sudo
Salinibacter sensory rhodopsin: sensory rhodopsin I-like protein from a eubacterium.
The Journal of biological chemistry 2008;283(35):23533-41.
2008: Yuji Furutani; Motohiro Ito; Yuki Sudo; Naoki Kamo; Hideki Kandori
Protein-protein interaction of a Pharaonis halorhodopsin mutant forming a complex with Pharaonis halobacterial transducer protein II detected by Fourier-transform infrared spectroscopy.
Photochemistry and photobiology 2008;84(4):874-9.
2008: Motohiro Ito; Yuki Sudo; Yuji Furutani; Takashi Okitsu; Akimori Wada; Michio Homma; John L Spudich; Hideki Kandori
Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII.
Biochemistry 2008;47(23):6208-15.
2008: Víctor A Lórenz-Fonfría; Yuji Furutani; Hideki Kandori
Active internal waters in the bacteriorhodopsin photocycle. A comparative study of the L and M intermediates at room and cryogenic temperatures by infrared spectroscopy.
Biochemistry 2008;47(13):4071-81.
2008: Yuki Sudo; Yuji Furutani; Masayuki Iwamoto; Naoki Kamo; Hideki Kandori
Structural changes in the O-decay accelerated mutants of pharaonis phoborhodopsin.
Biochemistry 2008;47(9):2866-74.
2008: Yuji Furutani; Hazuki Takahashi; Jun Sasaki; Yuki Sudo; John L Spudich; Hideki Kandori
Structural changes of sensory rhodopsin I and its transducer protein are dependent on the protonated state of Asp76.
Biochemistry 2008;47(9):2875-83.
2008: Atsushi Yamamoto; Tatsuya Iwata; Satoru Tokutomi; Hideki Kandori
Role of Phe1010 in light-induced structural changes of the neo1-LOV2 domain of Adiantum.
Biochemistry 2008;47(3):922-8.
2008: Maiko Yoshitsugu; Mikihiro Shibata; Daisuke Ikeda; Yuji Furutani; Hideki Kandori
Color change of proteorhodopsin by a single amino acid replacement at a distant cytoplasmic loop.
Angewandte Chemie (International ed. in English) 2008;47(21):3923-6.
2007: Yoshiaki Sato; Mika Nabeno; Tatsuya Iwata; Satoru Tokutomi; Minoru Sakurai; Hideki Kandori
Heterogeneous environment of the S-H group of Cys966 near the flavin chromophore in the LOV2 domain of Adiantum neochrome1.
Biochemistry 2007;46(36):10258-65.
2007: Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
Photochromism of Anabaena sensory rhodopsin.
Journal of the American Chemical Society 2007;129(27):8644-9.
2007: Mikihiro Shibata; Maiko Yoshitsugu; Noriko Mizuide; Kunio Ihara; Hideki Kandori
Halide binding by the D212N mutant of Bacteriorhodopsin affects hydrogen bonding of water in the active site.
Biochemistry 2007;46(25):7525-35.
2007: Tatsuya Iwata; Atsushi Yamamoto; Satoru Tokutomi; Hideki Kandori
Hydration and temperature similarly affect light-induced protein structural changes in the chromophoric domain of phototropin.
Biochemistry 2007;46(23):7016-21.
2007: Daisuke Ikeda; Yuji Furutani; Hideki Kandori
FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin.
Biochemistry 2007;46(18):5365-73.
2007: Alex Perálvarez-Marín; Víctor A Lórenz-Fonfría; José Luis Bourdelande; Enrique Querol; Hideki Kandori; Esteve Padrós
Inter-helical hydrogen bonds are essential elements for intra-protein signal transduction: the role of Asp115 in bacteriorhodopsin transport function.
Journal of molecular biology 2007;368(3):666-76.
2007: Víctor A Lórenz-Fonfría; Hideki Kandori
Bayesian maximum entropy (two-dimensional) lifetime distribution reconstruction from time-resolved spectroscopic data.
Applied spectroscopy 2007;61(4):428-43.
2007: Yuji Furutani; Kazutomo Ido; Masako Sasaki; Makoto Ogawa; Hideki Kandori
Clay mimics color tuning in visual pigments.
Angewandte Chemie (International ed. in English) 2007;46(42):8010-2.
2007: Víctor A Lórenz-Fonfría; Hideki Kandori
Practical aspects of the maximum entropy inversion of the laplace transform for the quantitative analysis of multi-exponential data.
Applied spectroscopy 2007;61(1):74-84.
2007: Daisuke Matsuoka; Tatsuya Iwata; Kazunori Zikihara; Hideki Kandori; Satoru Tokutomi
Primary processes during the light-signal transduction of phototropin.
Photochemistry and photobiology 2007;83(1):122-30.
2006: Tatsuya Iwata; Dai Nozaki; Yoshiaki Sato; Kyosuke Sato; Yasuzo Nishina; Kiyoshi Shiga; Satoru Tokutomi; Hideki Kandori
Identification of the C=O stretching vibrations of FMN and peptide backbone by 13C-labeling of the LOV2 domain of Adiantum phytochrome3.
Biochemistry 2006;45(51):15384-91.
2006: Yuji Furutani; Masayo Sumii; Ying Fan; Lichi Shi; Stephen A Waschuk; Leonid S Brown; Hideki Kandori
Conformational coupling between the cytoplasmic carboxylic acid and the retinal in a fungal light-driven proton pump.
Biochemistry 2006;45(51):15349-58.
2006: Yuji Furutani; Yuki Sudo; Akimori Wada; Masayoshi Ito; Kazumi Shimono; Naoki Kamo; Hideki Kandori
Assignment of the hydrogen-out-of-plane and -in-plane vibrations of the retinal chromophore in the K intermediate of pharaonis phoborhodopsin.
Biochemistry 2006;45(39):11836-43.
2006: Kazunori Zikihara; Tatsuya Iwata; Daisuke Matsuoka; Hideki Kandori; Takeshi Todo; Satoru Tokutomi
Photoreaction cycle of the light, oxygen, and voltage domain in FKF1 determined by low-temperature absorption spectroscopy.
Biochemistry 2006;45(36):10828-37.
2006: Noriko Mizuide; Mikihiro Shibata; Noga Friedman; Mordechai Sheves; Marina Belenky; Judith Herzfeld; Hideki Kandori
Structural changes in bacteriorhodopsin following retinal photoisomerization from the 13-cis form.
Biochemistry 2006;45(35):10674-81.
2006: Mikihiro Shibata; Kunio Ihara; Hideki Kandori
Hydrogen-bonding interaction of the protonated schiff base with halides in a chloride-pumping bacteriorhodopsin mutant.
Biochemistry 2006;45(35):10633-40.
2006: Norikazu Muneda; Mikihiro Shibata; Makoto Demura; Hideki Kandori
Internal water molecules of the proton-pumping halorhodopsin in the presence of azide.
Journal of the American Chemical Society 2006;128(19):6294-5.
2006: Kentaro Kamada; Yuji Furutani; Yuki Sudo; Naoki Kamo; Hideki Kandori
Temperature-dependent interactions between photoactivated pharaonis phoborhodopsin and its transducer.
Biochemistry 2006;45(15):4859-66.
2006: Akira Kawanabe; Yuji Furutani; Kwang-Hwan Jung; Hideki Kandori
FTIR study of the photoisomerization processes in the 13-cis and all-trans forms of Anabaena sensory rhodopsin at 77 K.
Biochemistry 2006;45(14):4362-70.
2006: Víctor A Lórenz-Fonfría; Hideki Kandori
Transformation of time-resolved spectra to lifetime-resolved spectra by maximum entropy inversion of the laplace transform.
Applied spectroscopy 2006;60(4):407-17.
2006: Toru Ota; Yuji Furutani; Akihisa Terakita; Yoshinori Shichida; Hideki Kandori
Structural changes in the Schiff base region of squid rhodopsin upon photoisomerization studied by low-temperature FTIR spectroscopy.
Biochemistry 2006;45(9):2845-51.
2006: Takahiro Hirano; Naoko Fujioka; Hiroo Imai; Hideki Kandori; Akimori Wada; Masayoshi Ito; Yoshinori Shichida
Assignment of the vibrational modes of the chromophores of iodopsin and bathoiodopsin: low-temperature fourier transform infrared spectroscopy of 13C- and 2H-labeled iodopsins.
Biochemistry 2006;45(4):1285-94.
2005: Yuki Sudo; Yuji Furutani; Akimori Wada; Masayoshi Ito; Naoki Kamo; Hideki Kandori
Steric constraint in the primary photoproduct of an archaeal rhodopsin from regiospecific perturbation of C-D stretching vibration of the retinyl chromophore.
Journal of the American Chemical Society 2005;127(46):16036-7.
2005: Masayo Sumii; Yuji Furutani; Stephen A Waschuk; Leonid S Brown; Hideki Kandori
Strongly hydrogen-bonded water molecule present near the retinal chromophore of Leptosphaeria rhodopsin, the bacteriorhodopsin-like proton pump from a eukaryote.
Biochemistry 2005;44(46):15159-66.
2005: Hideki Kandori; Hiro Nakamura; Yoichi Yamazaki; Tatsushi Mogi
Redox-induced protein structural changes in cytochrome bo revealed by Fourier transform infrared spectroscopy and [13C]Tyr labeling.
The Journal of biological chemistry 2005;280(38):32821-6.
2005: Yuji Furutani; Akira Kawanabe; Kwang-Hwan Jung; Hideki Kandori
FTIR spectroscopy of the all-trans form of Anabaena sensory rhodopsin at 77 K: hydrogen bond of a water between the Schiff base and Asp75.
Biochemistry 2005;44(37):12287-96.
2005: Mikihiro Shibata; Norikazu Muneda; Takanori Sasaki; Kazumi Shimono; Naoki Kamo; Makoto Demura; Hideki Kandori
Hydrogen-bonding alterations of the protonated Schiff base and water molecule in the chloride pump of Natronobacterium pharaonis.
Biochemistry 2005;44(37):12279-86.
2005: Yuji Furutani; Mikihiro Shibata; Hideki Kandori
Strongly hydrogen-bonded water molecules in the Schiff base region of rhodopsins.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology 2005;4(9):661-6.
2005: Yuji Furutani; Akihisa Terakita; Yoshinori Shichida; Hideki Kandori
FTIR studies of the photoactivation processes in squid retinochrome.
Biochemistry 2005;44(22):7988-97.
2005: Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Hideki Kandori
Comparative investigation of the LOV1 and LOV2 domains in Adiantum phytochrome3.
Biochemistry 2005;44(20):7427-34.
2005: Mikihiro Shibata; Hideki Kandori
FTIR studies of internal water molecules in the Schiff base region of bacteriorhodopsin.
Biochemistry 2005;44(20):7406-13.
2005: Yuji Furutani; Kentaro Kamada; Yuki Sudo; Kazumi Shimono; Naoki Kamo; Hideki Kandori
Structural changes of the complex between pharaonis phoborhodopsin and its cognate transducer upon formation of the M photointermediate.
Biochemistry 2005;44(8):2909-15.
2005: Yoshiaki Sato; Tatsuya Iwata; Satoru Tokutomi; Hideki Kandori
Reactive cysteine is protonated in the triplet excited state of the LOV2 domain in Adiantum phytochrome3.
Journal of the American Chemical Society 2005;127(4):1088-9.
2004: Shigehiko Hayashi; Emadeddin Emadeddin Tajkhorshid; Hideki Kandori; Klaus Schulten
Role of hydrogen-bond network in energy storage of bacteriorhodopsin's light-driven proton pump revealed by ab initio normal-mode analysis.
Journal of the American Chemical Society 2004;126(34):10516-7.
2004: Yuji Furutani; Arandi G Bezerra; Stephen A Waschuk; Masayo Sumii; Leonid S Brown; Hideki Kandori
FTIR spectroscopy of the K photointermediate of Neurospora rhodopsin: structural changes of the retinal, protein, and water molecules after photoisomerization.
Biochemistry 2004;43(30):9636-46.
2004: Taro Tanimoto; Mikihiro Shibata; Marina Belenky; Judith Herzfeld; Hideki Kandori
Altered hydrogen bonding of Arg82 during the proton pump cycle of bacteriorhodopsin: a low-temperature polarized FTIR spectroscopic study.
Biochemistry 2004;43(29):9439-47.
2004: Hideki Kandori
Hydration switch model for the proton transfer in the Schiff base region of bacteriorhodopsin.
Biochimica et biophysica acta 2004;1658(1-2):72-9.
2004: Dai Nozaki; Tatsuya Iwata; Tomoko Ishikawa; Takeshi Todo; Satoru Tokutomi; Hideki Kandori
Role of Gln1029 in the photoactivation processes of the LOV2 domain in adiantum phytochrome3.
Biochemistry 2004;43(26):8373-9.
2004: Yuji Furutani; Masayuki Iwamoto; Kazumi Shimono; Akimori Wada; Masayoshi Ito; Naoki Kamo; Hideki Kandori
FTIR spectroscopy of the O photointermediate in pharaonis phoborhodopsin.
Biochemistry 2004;43(18):5204-12.
2003: Mikihiro Shibata; Taro Tanimoto; Hideki Kandori
Water molecules in the schiff base region of bacteriorhodopsin.
Journal of the American Chemical Society 2003;125(44):13312-3.
2003: Yuji Furutani; Yoshinori Shichida; Hideki Kandori
Structural changes of water molecules during the photoactivation processes in bovine rhodopsin.
Biochemistry 2003;42(32):9619-25.
2003: Yuji Furutani; Hideki Kandori; Yoshinori Shichida
Structural changes in lumirhodopsin and metarhodopsin I studied by their photoreactions at 77 K.
Biochemistry 2003;42(28):8494-500.
2003: Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Takatoshi Kagawa; Masamitsu Wada; Hideki Kandori
Light-induced structural changes in the LOV2 domain of Adiantum phytochrome3 studied by low-temperature FTIR and UV-visible spectroscopy.
Biochemistry 2003;42(27):8183-91.
2003: Yuji Furutani; Yuki Sudo; Naoki Kamo; Hideki Kandori
FTIR spectroscopy of the complex between pharaonis phoborhodopsin and its transducer protein.
Biochemistry 2003;42(17):4837-42.
2003: Taro Tanimoto; Yuji Furutani; Hideki Kandori
Structural changes of water in the Schiff base region of bacteriorhodopsin: proposal of a hydration switch model.
Biochemistry 2003;42(8):2300-6.
2002: Yuji Furutani; Masayuki Iwamoto; Kazumi Shimono; Naoki Kamo; Hideki Kandori
FTIR spectroscopy of the M photointermediate in pharaonis rhoborhodopsin.
Biophysical journal 2002;83(6):3482-9.
2002: Tatsuya Iwata; Satoru Tokutomi; Hideki Kandori
Photoreaction of the cysteine S-H group in the LOV2 domain of Adiantum phytochrome3.
Journal of the American Chemical Society 2002;124(40):11840-1.
2002: Yuji Furutani; Hideki Kandori
Internal water molecules of archaeal rhodopsins (Review).
Molecular membrane biology 2002;19(4):257-65.
2002: Hideki Kandori; Marina Belenky; Judith Herzfeld
Vibrational frequency and dipolar orientation of the protonated Schiff base in bacteriorhodopsin before and after photoisomerization.
Biochemistry 2002;41(19):6026-31.
2002: Hideki Kandori; Kazumi Shimono; Yoshinori Shichida; Naoki Kamo
Interaction of Asn105 with the retinal chromophore during photoisomerization of pharaonis phoborhodopsin.
Biochemistry 2002;41(14):4554-9.
2001: Hideki Kandori; Y Furutani; K Shimono; Yoshinori Shichida; N Kamo
Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy.
Biochemistry 2001;40(51):15693-8.
2001: Hideki Kandori; Yoshinori Shichida; T Yoshizawa
Photoisomerization in rhodopsin.
Biochemistry. Biokhimii͡a 2001;66(11):1197-209.
2001: Hideki Kandori; K Shimono; Y Sudo; M Iwamoto; Yoshinori Shichida; N Kamo
Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin.
Biochemistry 2001;40(31):9238-46.
2001: Hiroo Imai; Takahiro Hirano; Hideki Kandori; Akihisa Terakita; Yoshinori Shichida
Difference in molecular structure of rod and cone visual pigments studied by Fourier transform infrared spectroscopy.
Biochemistry 2001;40(9):2879-86.
2001: Hideki Kandori; Y Yamazaki; Yoshinori Shichida; Jan Raap; Johan Lugtenburg; Marina Belenky; Judith Herzfeld
Tight Asp-85--Thr-89 association during the pump switch of bacteriorhodopsin.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(4):1571-6.
2001: Takahiro Hirano; Hiroo Imai; Hideki Kandori; Yoshinori Shichida
Chloride effect on iodopsin studied by low-temperature visible and infrared spectroscopies.
Biochemistry 2001;40(5):1385-92.
2000: Hideki Kandori
Role of internal water molecules in bacteriorhodopsin.
Biochimica et biophysica acta 2000;1460(1):177-91.
2000: Hideki Kandori; T Iwata; J Hendriks; A Maeda; Klaas J Hellingwerf
Water structural changes involved in the activation process of photoactive yellow protein.
Biochemistry 2000;39(27):7902-9.
2000: Hideki Kandori; N Kinoshita; Y Yamazaki; A Maeda; Yoshinori Shichida; Richard Needleman; Janos K Lanyi; M Bizounok; Judith Herzfeld; Jan Raap; Johan Lugtenburg
Local and distant protein structural changes on photoisomerization of the retinal in bacteriorhodopsin.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(9):4643-8.
1999: Yasushi Imamoto; Takahiro Hirano; Hiroo Imai; Hideki Kandori; A Maeda; T Yoshizawa; M Groesbeek; Johan Lugtenburg; Yoshinori Shichida
Effect of anion binding on iodopsin studied by low-temperature fourier transform infrared spectroscopy.
Biochemistry 1999;38(36):11749-54.
1999: Hideki Kandori; N Kinoshita; Y Yamazaki; A Maeda; Yoshinori Shichida; Richard Needleman; Janos K Lanyi; M Bizounok; Judith Herzfeld; Jan Raap; Johan Lugtenburg
Structural change of threonine 89 upon photoisomerization in bacteriorhodopsin as revealed by polarized FTIR spectroscopy.
Biochemistry 1999;38(30):9676-83.
1999: Y S Chon; Hideki Kandori; Jun Sasaki; Janos K Lanyi; Richard Needleman; A Maeda
Existence of two L photointermediates of halorhodopsin from Halobacterium salinarium, differing in their protein and water FTIR bands.
Biochemistry 1999;38(29):9449-55.
1999: Y Yamazaki; Hideki Kandori; Tatsushi Mogi
Effects of subunit I mutations on redox-linked conformational changes of the Escherichia coli bo-type ubiquinol oxidase revealed by Fourier-transform infrared spectroscopy.
Journal of biochemistry 1999;126(1):194-9.
1999: Y Yamazaki; Hideki Kandori; Tatsushi Mogi
Fourier-transform infrared studies on conformation changes in bd-type ubiquinol oxidase from Escherichia coli upon photoreduction of the redox metal centers.
Journal of biochemistry 1999;125(6):1131-6.
1998: T Nagata; Akihisa Terakita; Hideki Kandori; Yoshinori Shichida; A Maeda
The hydrogen-bonding network of water molecules and the peptide backbone in the region connecting Asp83, Gly120, and Glu113 in bovine rhodopsin.
Biochemistry 1998;37(49):17216-22.
1998: S Nishimura; Hideki Kandori; A Maeda
Interaction between photoactivated rhodopsin and the C-terminal peptide of transducin alpha-subunit studied by FTIR spectroscopy.
Biochemistry 1998;37(45):15816-24.
1998: Y Yamazaki; Hideki Kandori; Richard Needleman; Janos K Lanyi; A Maeda
Interaction of the protonated Schiff base with the peptide backbone of valine 49 and the intervening water molecule in the N photointermediate of bacteriorhodopsin.
Biochemistry 1998;37(6):1559-64.
1997: S Nishimura; Hideki Kandori; A Maeda
Transmembrane signaling mediated by water in bovine rhodopsin.
Photochemistry and photobiology 1997;66(6):796-801.
1997: M Hatanaka; Hideki Kandori; A Maeda
Localization and orientation of functional water molecules in bacteriorhodopsin as revealed by polarized Fourier transform infrared spectroscopy.
Biophysical journal 1997;73(2):1001-6.
1997: T Nagata; Akihisa Terakita; Hideki Kandori; Daisuke Kojima; Yoshinori Shichida; A Maeda
Water and peptide backbone structure in the active center of bovine rhodopsin.
Biochemistry 1997;36(20):6164-70.
1997: M Hatanaka; R Kashima; Hideki Kandori; N Friedman; M Sheves; Richard Needleman; Janos K Lanyi; A Maeda
Trp86 --> Phe replacement in bacteriorhodopsin affects a water molecule near Asp85 and light adaptation.
Biochemistry 1997;36(18):5493-8.
1997: Hideki Kandori; Y Yamazaki; M Hatanaka; Richard Needleman; Leonid S Brown; HT Richter; Janos K Lanyi; A Maeda
Time-resolved fourier transform infrared study of structural changes in the last steps of the photocycles of Glu-204 and Leu-93 mutants of bacteriorhodopsin.
Biochemistry 1997;36(17):5134-41.
1997: A Maeda; Hideki Kandori; Y Yamazaki; S Nishimura; M Hatanaka; Y S Chon; Jun Sasaki; Richard Needleman; Janos K Lanyi
Intramembrane signaling mediated by hydrogen-bonding of water and carboxyl groups in bacteriorhodopsin and rhodopsin.
Journal of biochemistry 1997;121(3):399-406.
1997: Hideki Kandori; A Maeda
[How does, bacteriorhodopsin convert light into energy?].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(2):101-9.
1997: S Nishimura; Hideki Kandori; Masashi Nakagawa; Motoyuki Tsuda; A Maeda
Structural dynamics of water and the peptide backbone around the Schiff base associated with the light-activated process of octopus rhodopsin.
Biochemistry 1997;36(4):864-70.
1996: HT Richter; Richard Needleman; Hideki Kandori; A Maeda; Janos K Lanyi
Relationship of retinal configuration and internal proton transfer at the end of the bacteriorhodopsin photocycle.
Biochemistry 1996;35(48):15461-6.
1996: Y S Chon; Jun Sasaki; Hideki Kandori; Leonid S Brown; Janos K Lanyi; Richard Needleman; A Maeda
Hydration of the counterion of the Schiff base in the chloride-transporting mutant of bacteriorhodopsin: FTIR and FT-raman studies of the effects of anion binding when Asp85 is replaced with a neutral residue.
Biochemistry 1996;35(45):14244-50.
1996: S Nishimura; Jun Sasaki; Hideki Kandori; T Matsuda; Yoshitaka Fukada; A Maeda
Structural changes in the peptide backbone in complex formation between activated rhodopsin and transducin studied by FTIR spectroscopy.
Biochemistry 1996;35(41):13267-71.
1996: M Hatanaka; Jun Sasaki; Hideki Kandori; T G Ebrey; Richard Needleman; Janos K Lanyi; A Maeda
Effects of arginine-82 on the interactions of internal water molecules in bacteriorhodopsin.
Biochemistry 1996;35(20):6308-12.
1996: Y Yamazaki; Satoru Tuzi; Hazime Saitô; Hideki Kandori; Richard Needleman; Janos K Lanyi; A Maeda
Hydrogen bonds of water and C==O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin.
Biochemistry 1996;35(13):4063-8.
1995: S Nishimura; Jun Sasaki; Hideki Kandori; Johan Lugtenburg; A Maeda
Structural changes in the lumirhodopsin-to-metarhodopsin I conversion of air-dried bovine rhodopsin.
Biochemistry 1995;34(51):16758-63.
1995: Leonid S Brown; J Sasaki; Hideki Kandori; A Maeda; Richard Needleman; Janos K Lanyi
Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin.
The Journal of biological chemistry 1995;270(45):27122-6.
1995: G Váró; Leonid S Brown; J Sasaki; Hideki Kandori; A Maeda; Richard Needleman; Janos K Lanyi
Light-driven chloride ion transport by halorhodopsin from Natronobacterium pharaonis. 1. The photochemical cycle.
Biochemistry 1995;34(44):14490-9.
1995: Hideki Kandori; A Maeda
FTIR spectroscopy reveals microscopic structural changes of the protein around the rhodopsin chromophore upon photoisomerization.
Biochemistry 1995;34(43):14220-9.
1995: Leonid S Brown; G Váró; M Hatanaka; J Sasaki; Hideki Kandori; A Maeda; N Friedman; Mordechai Sheves; R Nedleman; Janos K Lanyi
The complex extracellular domain regulates the deprotonation and reprotonation of the retinal Schiff base during the bacteriorhodopsin photocycle.
Biochemistry 1995;34(39):12903-11.
1995: Jun Sasaki; Leonid S Brown; Y S Chon; Hideki Kandori; A Maeda; Richard Needleman; Janos K Lanyi
Conversion of bacteriorhodopsin into a chloride ion pump.
Science (New York, N.Y.) 1995;269(5220):73-5.
1995: Y Yamazaki; M Hatanaka; Hideki Kandori; Jun Sasaki; W F Karstens; Jan Raap; Johan Lugtenburg; M Bizounok; Judith Herzfeld; Richard Needleman
Water structural changes at the proton uptake site (the Thr46-Asp96 domain) in the L intermediate of bacteriorhodopsin.
Biochemistry 1995;34(21):7088-93.
1995: Jun Sasaki; T Yuzawa; Hideki Kandori; A Maeda; H Hamaguchi
Nanosecond time-resolved infrared spectroscopy distinguishes two K species in the bacteriorhodopsin photocycle.
Biophysical journal 1995;68(5):2073-80.
1995: Y Yamazaki; Jun Sasaki; M Hatanaka; Hideki Kandori; A Maeda; Richard Needleman; T Shinada; K Yoshihara; Leonid S Brown; Janos K Lanyi
Interaction of tryptophan-182 with the retinal 9-methyl group in the L intermediate of bacteriorhodopsin.
Biochemistry 1995;34(2):577-82.
1994: T Okada; T Matsuda; Hideki Kandori; Yoshitaka Fukada; T Yoshizawa; Yoshinori Shichida
Circular dichroism of metaiodopsin II and its binding to transducin: a comparative study between meta II intermediates of iodopsin and rhodopsin.
Biochemistry 1994;33(16):4940-6.
1993: Yoshinori Shichida; T Okada; Hideki Kandori; Yoshitaka Fukada; T Yoshizawa
Nanosecond laser photolysis of iodopsin, a chicken red-sensitive cone visual pigment.
Biochemistry 1993;32(40):10832-8.
1993: T Mizukami; Hideki Kandori; Yoshinori Shichida; A H Chen; Fadila Derguini; C G Caldwell; C F Biffe; K Nakanishi; T Yoshizawa
Photoisomerization mechanism of the rhodopsin chromophore: picosecond photolysis of pigment containing 11-cis-locked eight-membered ring retinal.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(9):4072-6.
1991: Yoshinori Shichida; Hideki Kandori; T Okada; T Yoshizawa; N Nakashima; K Yoshihara
Differences in the photobleaching process between 7-cis- and 11-cis-rhodopsins: a unique interaction change between the chromophore and the protein during the lumi-meta I transition.
Biochemistry 1991;30(24):5918-26.
1991: T Okada; Hideki Kandori; Yoshinori Shichida; T Yoshizawa; M Denny; B W Zhang; A E Asato; R S Liu
Spectroscopic study of the batho-to-lumi transition during the photobleaching of rhodopsin using ring-modified retinal analogues.
Biochemistry 1991;30(19):4796-802.
1990: Hideki Kandori; T Mizukami; T Okada; Yasushi Imamoto; Yoshitaka Fukada; Yoshinori Shichida; T Yoshizawa
Bathoiodopsin, a primary intermediate of iodopsin at physiological temperature.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(22):8908-12.
1989: Yasushi Imamoto; Hideki Kandori; Toshiyuki Okano; Yoshitaka Fukada; Yoshinori Shichida; T Yoshizawa
Effect of chloride ion on the thermal decay process of the batho intermediate of iodopsin at low temperature.
Biochemistry 1989;28(24):9412-6.
1989: Hideki Kandori; Yoshinori Shichida; T Yoshizawa
Absolute absorption spectra of batho- and photorhodopsins at room temperature. Picosecond laser photolysis of rhodopsin in polyacrylamide.
Biophysical journal 1989;56(3):453-7.
1989: Hideki Kandori; S Matuoka; Yoshinori Shichida; T Yoshizawa; M Ito; K Tsukida; V Balogh-Nair; K Nakanishi
Mechanism of isomerization of rhodopsin studied by use of 11-cis-locked rhodopsin analogues excited with a picosecond laser pulse.
Biochemistry 1989;28(15):6460-7.
1989: Hideki Kandori; S Matuoka; Yoshinori Shichida; T Yoshizawa
Dependency of photon density on primary process of cattle rhodopsin.
Photochemistry and photobiology 1989;49(2):181-4.
1988: Hideki Kandori; S Matuoka; H Nagai; Yoshinori Shichida; T Yoshizawa
Dependency of apparent relative quantum yield of isorhodopsin to rhodopsin on the photon density of picosecond laser pulse.
Photochemistry and photobiology 1988;48(1):93-7.