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Minoru Kanehisa
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51
Goto, Susumu
23
Kawashima, Shuichi
14
Yamanishi, Yoshihiro
12
Itoh, Masumi
12
Hattori, Masahiro
12
Okuda, Shujiro
10
Akutsu, Tatsuya
9
Hashimoto, Kosuke
9
Mamitsuka, Hiroshi
9
Ogata, H
9
Yamada, Takuji
8
Fujibuchi, W
7
Honda, Wataru
7
Ueda, Nobuhisa
6
Okuno, Yasushi
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All Publications
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2009: Hirakawa Mika; Nishihara Hidenori; Kanehisa Minoru; Okada Norihiro
Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes.
Gene 2009;441(1-2):100-10.
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2009: Yamanishi Yoshihiro; Hattori Masahiro; Kotera Masaaki; Goto Susumu; Kanehisa Minoru
E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
Bioinformatics (Oxford, England) 2009;25(12):i179-86.
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2009: Hashimoto Kosuke; Tokimatsu Toshiaki; Kawano Shin; Yoshizawa Akiyasu C; Okuda Shujiro; Goto Susumu; Kanehisa Minoru
Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.
Carbohydrate research 2009;344(7):881-7.
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2009: Shigemizu Daichi; Araki Michihiro; Okuda Shujiro; Goto Susumu; Kanehisa Minoru
Extraction and analysis of chemical modification patterns in drug development.
Journal of chemical information and modeling 2009;49(4):1122-9.
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2008: Honda Wataru; Tanabe Mao; Yano Atsuko; Kanehisa Minoru
[Bioinformatics, systems biology and KEGG]
Seikagaku. The Journal of Japanese Biochemical Society 2008;80(12):1094-111.
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2008: Hayes C Nelson; Diez Diego; Joannin Nicolas; Honda Wataru; Kanehisa Minoru; Wahlgren Mats; Wheelock Craig E; Goto Susumu
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.
Bioinformatics (Oxford, England) 2008;24(21):2564-5.
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2008: Hashimoto Kosuke; Takigawa Ichigaku; Shiga Motoki; Kanehisa Minoru; Mamitsuka Hiroshi
Mining significant tree patterns in carbohydrate sugar chains.
Bioinformatics (Oxford, England) 2008;24(16):i167-73.
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2008: Yamanishi Yoshihiro; Araki Michihiro; Gutteridge Alex; Honda Wataru; Kanehisa Minoru
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
Bioinformatics (Oxford, England) 2008;24(13):i232-40.
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2008: Okuda Shujiro; Yamada Takuji; Hamajima Masami; Itoh Masumi; Katayama Toshiaki; Bork Peer; Goto Susumu; Kanehisa Minoru
KEGG Atlas mapping for global analysis of metabolic pathways.
Nucleic acids research 2008;36(Web Server issue):W423-6.
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2008: Kojima Kenji K; Kanehisa Minoru
Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture.
Molecular biology and evolution 2008;25(7):1395-404.
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2008: Kanehisa Minoru; Araki Michihiro; Goto Susumu; Hattori Masahiro; Hirakawa Mika; Itoh Masumi; Katayama Toshiaki; Kawashima Shuichi; Okuda Shujiro; Tokimatsu Toshiaki; Yamanishi Yoshihiro
KEGG for linking genomes to life and the environment.
Nucleic acids research 2008;36(Database issue):D480-4.
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2008: Kawashima Shuichi; Pokarowski Piotr; Pokarowska Maria; Kolinski Andrzej; Katayama Toshiaki; Kanehisa Minoru
AAindex: amino acid index database, progress report 2008.
Nucleic acids research 2008;36(Database issue):D202-5.
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2008: Hashimoto Kosuke; Yoshizawa Akiyasu C; Okuda Shujiro; Kuma Keiichi; Goto Susumu; Kanehisa Minoru
The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes.
Journal of lipid research 2008;49(1):183-91.
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2008: Takarabe Masataka; Okuda Shujiro; Itoh Masumi; Tokimatsu Tosihaki; Goto Susumu; Kanehisa Minoru
Network analysis of adverse drug interactions.
Genome informatics. International Conference on Genome Informatics 2008;20():252-9.
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2008: Shimizu Yugo; Hattori Masahiro; Goto Susumu; Kanehisa Minoru
Generalized reaction patterns for prediction of unknown enzymatic reactions.
Genome informatics. International Conference on Genome Informatics 2008;20():149-58.
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2007: Kadowaki Tadashi; Wheelock Craig E; Adachi Tetsuya; Kudo Taku; Okamoto Shinobu; Tanaka Nobuya; Tonomura Koichiro; Tsujimoto Gozoh; Mamitsuka Hiroshi; Goto Susumu; Kanehisa Minoru
Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis.
Environmental science & technology 2007;41(23):7997-8003.
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2007: Limviphuvadh Vachiranee; Tanaka Seigo; Goto Susumu; Ueda Kunihiro; Kanehisa Minoru
The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs).
Bioinformatics (Oxford, England) 2007;23(16):2129-38.
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2007: Moriya Yuki; Itoh Masumi; Okuda Shujiro; Yoshizawa Akiyasu C; Kanehisa Minoru
KAAS: an automatic genome annotation and pathway reconstruction server.
Nucleic acids research 2007;35(Web Server issue):W182-5.
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2007: Oh Mina; Yamada Takuji; Hattori Masahiro; Goto Susumu; Kanehisa Minoru
Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways.
Journal of chemical information and modeling 2007;47(4):1702-12.
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2007: Masoudi-Nejad Ali; Goto Susumu; Jauregui Ruy; Ito Masumi; Kawashima Shuichi; Moriya Yuki; Endo Takashi R; Kanehisa Minoru
EGENES: transcriptome-based plant database of genes with metabolic pathway information and expressed sequence tag indices in KEGG.
Plant physiology 2007;144(2):857-66.
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2007: Minowa Yohsuke; Araki Michihiro; Kanehisa Minoru
Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.
Journal of molecular biology 2007;368(5):1500-17.
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2007: Yamanishi Yoshihiro; Mihara Hisaaki; Osaki Motoharu; Muramatsu Hisashi; Esaki Nobuyoshi; Sato Tetsuya; Hizukuri Yoshiyuki; Goto Susumu; Kanehisa Minoru
Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa.
The FEBS journal 2007;274(9):2262-73.
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2007: Okamoto Shinobu; Yamanishi Yoshihiro; Ehira Shigeki; Kawashima Shuichi; Tonomura Koichiro; Kanehisa Minoru
Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis.
Proteomics 2007;7(6):900-9.
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2007: Kawashima Shuichi; Kawashima Takeshi; Putnam Nicholas H; Rokhsar Daniel S; Wada Hiroshi; Kanehisa Minoru
Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.
Genome informatics. International Conference on Genome Informatics 2007;19():50-60.
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2007: Huang Jian; Honda Wataru; Kanehisa Minoru
Predicting B cell epitope residues with network topology based amino acid indices.
Genome informatics. International Conference on Genome Informatics 2007;19():40-9.
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2007: Muto Ai; Hattori Masahiro; Kanehisa Minoru
Analysis of common substructures of metabolic compounds within the different organism groups.
Genome informatics. International Conference on Genome Informatics 2007;18():299-307.
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2007: Suga Akitsugu; Yamanishi Yoshihiro; Hashimoto Kosuke; Goto Susumu; Kanehisa Minoru
An improved scoring scheme for predicting glycan structures from gene expression data.
Genome informatics. International Conference on Genome Informatics 2007;18():237-46.
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2007: Huang Jian; Kawashima Shuichi; Kanehisa Minoru
New amino acid indices based on residue network topology.
Genome informatics. International Conference on Genome Informatics 2007;18():152-61.
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2007: Masoudi-Nejad Ali; Goto Susumu; Endo Takashi R; Kanehisa Minoru
KEGG bioinformatics resource for plant genomics research.
Methods in molecular biology (Clifton, N.J.) 2007;406():437-58.
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2007: Aoki-Kinoshita Kiyoko F; Kanehisa Minoru
Gene annotation and pathway mapping in KEGG.
Methods in molecular biology (Clifton, N.J.) 2007;396():71-91.
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2007: Fujita Masashi; Mihara Hisaaki; Goto Susumu; Esaki Nobuyoshi; Kanehisa Minoru
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.
BMC bioinformatics 2007;8():225.
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2007: Schwartz Jean-Marc; Gaugain Claire; Nacher Jose C; de Daruvar Antoine; Kanehisa Minoru
Observing metabolic functions at the genome scale.
Genome biology 2007;8(6):R123.
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2007: Itoh Masumi; Nacher Jose C; Kuma Kei-ichi; Goto Susumu; Kanehisa Minoru
Evolutionary history and functional implications of protein domains and their combinations in eukaryotes.
Genome biology 2007;8(6):R121.
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2007: Gutteridge Alex; Kanehisa Minoru; Goto Susumu
Regulation of metabolic networks by small molecule metabolites.
BMC bioinformatics 2007;8():88.
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2007: Okuda Shujiro; Kawashima Shuichi; Kobayashi Kazuo; Ogasawara Naotake; Kanehisa Minoru; Goto Susumu
Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli.
BMC genomics 2007;8():48.
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2006: Aoki-Kinoshita Kiyoko F; Kanehisa Minoru
Bioinformatics approaches in glycomics and drug discovery.
Current opinion in molecular therapeutics 2006;8(6):514-20.
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2006: Sato Tetsuya; Yamanishi Yoshihiro; Horimoto Katsuhisa; Kanehisa Minoru; Toh Hiroyuki
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions.
Bioinformatics (Oxford, England) 2006;22(20):2488-92.
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2006: Yoshizawa Akiyasu C; Kawashima Shuichi; Okuda Shujiro; Fujita Masashi; Itoh Masumi; Moriya Yuki; Hattori Masahiro; Kanehisa Minoru
Extracting sequence motifs and the phylogenetic features of SNARE-dependent membrane traffic.
Traffic (Copenhagen, Denmark) 2006;7(8):1104-18.
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2006: Nacher Jose C; Schwartz Jean-Marc; Kanehisa Minoru; Akutsu Tatsuya
Identification of metabolic units induced by environmental signals.
Bioinformatics (Oxford, England) 2006;22(14):e375-83.
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2006: Aoki-Kinoshita Kiyoko F; Ueda Nobuhisa; Mamitsuka Hiroshi; Kanehisa Minoru
ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains.
Bioinformatics (Oxford, England) 2006;22(14):e25-34.
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2006: Masoudi-Nejad Ali; Tonomura Koichiro; Kawashima Shuichi; Moriya Yuki; Suzuki Masanori; Itoh Masumi; Kanehisa Minoru; Endo Takashi; Goto Susumu
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.
Nucleic acids research 2006;34(Web Server issue):W459-62.
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2006: Hashimoto Kosuke; Goto Susumu; Kawano Shin; Aoki-Kinoshita Kiyoko F; Ueda Nobuhisa; Hamajima Masami; Kawasaki Toshisuke; Kanehisa Minoru
KEGG as a glycome informatics resource.
Glycobiology 2006;16(5):63R-70R.
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2006: Okuda Shujiro; Katayama Toshiaki; Kawashima Shuichi; Goto Susumu; Kanehisa Minoru
ODB: a database of operons accumulating known operons across multiple genomes.
Nucleic acids research 2006;34(Database issue):D358-62.
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2006: Kanehisa Minoru; Goto Susumu; Hattori Masahiro; Aoki-Kinoshita Kiyoko F; Itoh Masumi; Kawashima Shuichi; Katayama Toshiaki; Araki Michihiro; Hirakawa Mika
From genomics to chemical genomics: new developments in KEGG.
Nucleic acids research 2006;34(Database issue):D354-7.
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2006: Nacher J C; Ochiai T; Yamada T; Kanehisa M; Akutsu T
The role of log-normal dynamics in the evolution of biochemical pathways.
Bio Systems 2006;83(1):26-37.
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2006: Tanaka Michihiro; Yamada Takuji; Itoh Masumi; Okuda Shujiro; Goto Susumu; Kanehisa Minoru
Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.
Genome informatics. International Conference on Genome Informatics 2006;17(1):230-9.
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2006: Honda Wataru; Kawashima Shuichi; Kanehisa Minoru
Metabolite antigens and pathway incompatibility.
Genome informatics. International Conference on Genome Informatics 2006;17(1):184-94.
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2006: Hashimoto Kosuke; Yoshizawa Akiyasu C; Saito Koichi; Yamada Takuji; Kanehisa Minoru
The repertoire of desaturases for unsaturated fatty acid synthesis in 397 genomes.
Genome informatics. International Conference on Genome Informatics 2006;17(1):173-83.
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2006: Huang Jian; Gutteridge Alex; Honda Wataru; Kanehisa Minoru
MIMOX: a web tool for phage display based epitope mapping.
BMC bioinformatics 2006;7():451.
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2006: Schwartz Jean-Marc; Kanehisa Minoru
Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis.
BMC bioinformatics 2006;7():186.
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2006: Yamada Takuji; Kanehisa Minoru; Goto Susumu
Extraction of phylogenetic network modules from the metabolic network.
BMC bioinformatics 2006;7():130.
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2005: Tamada Yoshinori; Bannai Hideo; Imoto Seiya; Katayama Toshiaki; Kanehisa Minoru; Miyano Satoru
Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models.
Journal of bioinformatics and computational biology 2005;3(6):1295-313.
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2005: Kawano Shin; Hashimoto Kosuke; Miyama Takashi; Goto Susumu; Kanehisa Minoru
Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.
Bioinformatics (Oxford, England) 2005;21(21):3976-82.
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2005: Aoki Kiyoko F; Kanehisa Minoru
Using the KEGG database resource.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2005;Chapter 1():Unit 1.12.
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2005: Hizukuri Yoshiyuki; Yamanishi Yoshihiro; Nakamura Osamu; Yagi Fumio; Goto Susumu; Kanehisa Minoru
Extraction of leukemia specific glycan motifs in humans by computational glycomics.
Carbohydrate research 2005;340(14):2270-8.
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2005: Schwartz Jean-Marc; Kanehisa Minoru
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.
Bioinformatics (Oxford, England) 2005;21 Suppl 2():ii204-5.
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2005: Sato Tetsuya; Yamanishi Yoshihiro; Kanehisa Minoru; Toh Hiroyuki
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
Bioinformatics (Oxford, England) 2005;21(17):3482-9.
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2005: Yamanishi Yoshihiro; Vert Jean-Philippe; Kanehisa Minoru
Supervised enzyme network inference from the integration of genomic data and chemical information.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i468-77.
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2005: Aoki Kiyoko F; Mamitsuka Hiroshi; Akutsu Tatsuya; Kanehisa Minoru
A score matrix to reveal the hidden links in glycans.
Bioinformatics (Oxford, England) 2005;21(8):1457-63.
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2005: Itoh Masumi; Goto Susumu; Akutsu Tatsuya; Kanehisa Minoru
Fast and accurate database homology search using upper bounds of local alignment scores.
Bioinformatics (Oxford, England) 2005;21(7):912-21.
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2005: Nacher J C; Ueda N; Kanehisa M; Akutsu T
Flexible construction of hierarchical scale-free networks with general exponent.
Physical review. E, Statistical, nonlinear, and soft matter physics 2005;71(3 Pt 2A):036132.
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2005: Honda Wataru; Kawashima Shuichi; Kanehisa Minoru
Autoimmune diseases and peptide variations.
Genome informatics. International Conference on Genome Informatics 2005;16(1):272-80.
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2005: Hashimoto Kosuke; Kawano Shin; Goto Susumu; Aoki-Kinoshita Kiyoko F; Kawashima Masayuki; Kanehisa Minoru
A global representation of the carbohydrate structures: a tool for the analysis of glycan.
Genome informatics. International Conference on Genome Informatics 2005;16(1):214-22.
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2005: Fujita Masashi; Kanehisa Minoru
Comparative analysis of DNA-binding proteins between thermophilic and mesophilic bacteria.
Genome informatics. International Conference on Genome Informatics 2005;16(1):174-81.
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2005: Yamada Takuji; Kawashima Shuichi; Mamitsuka Hiroshi; Goto Susumu; Kanehisa Minoru
Comprehensive analysis and prediction of synthetic lethality using subcellular locations.
Genome informatics. International Conference on Genome Informatics 2005;16(1):150-8.
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2005: Okuda Shujiro; Kawashima Shuichi; Goto Susumu; Kanehisa Minoru
Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.
Genome informatics. International Conference on Genome Informatics 2005;16(1):116-24.
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2004: Kotera Masaaki; Okuno Yasushi; Hattori Masahiro; Goto Susumu; Kanehisa Minoru
Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.
Journal of the American Chemical Society 2004;126(50):16487-98.
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2004: Igarashi Yoshinobu; Aoki Kiyoko F; Mamitsuka Hiroshi; Kuma Kei-Ichi; Kanehisa Minoru
The evolutionary repertoires of the eukaryotic-type ABC transporters in terms of the phylogeny of ATP-binding domains in eukaryotes and prokaryotes.
Molecular biology and evolution 2004;21(11):2149-60.
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2004: Yamanishi Y; Vert J-P; Kanehisa M
Protein network inference from multiple genomic data: a supervised approach.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i363-70.
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2004: Aoki Kiyoko F; Ueda Nobuhisa; Yamaguchi Atsuko; Kanehisa Minoru; Akutsu Tatsuya; Mamitsuka Hiroshi
Application of a new probabilistic model for recognizing complex patterns in glycans.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i6-14.
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2004: Aoki Kiyoko F; Yamaguchi Atsuko; Ueda Nobuhisa; Akutsu Tatsuya; Mamitsuka Hiroshi; Goto Susumu; Kanehisa Minoru
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.
Nucleic acids research 2004;32(Web Server issue):W267-72.
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2004: Kobayashi Mari; Ishizuka Tomokazu; Katayama Mitsunori; Kanehisa Minoru; Bhattacharyya-Pakrasi Maitrayee; Pakrasi Himadri B; Ikeuchi Masahiko
Response to oxidative stress involves a novel peroxiredoxin gene in the unicellular cyanobacterium Synechocystis sp. PCC 6803.
Plant & cell physiology 2004;45(3):290-9.
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2004: Kanehisa Minoru; Goto Susumu; Kawashima Shuichi; Okuno Yasushi; Hattori Masahiro
The KEGG resource for deciphering the genome.
Nucleic acids research 2004;32(Database issue):D277-80.
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2004: Yamada Takuji; Goto Susumu; Kanehisa Minoru
Extraction of phylogenetic network modules from prokayrote metabolic pathways.
Genome informatics. International Conference on Genome Informatics 2004;15(1):249-58.
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2004: Itoh Masumi; Akutsu Tatsuya; Kanehisa Minoru
Clustering of database sequences for fast homology search using upper bounds on alignment score.
Genome informatics. International Conference on Genome Informatics 2004;15(1):93-104.
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2004: Hizukuri Yoshiyuki; Yamanishi Yoshihiro; Hashimoto Kosuke; Kanehisa Minoru
Extraction of species-specific glycan substructures.
Genome informatics. International Conference on Genome Informatics 2004;15(1):69-81.
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2004: Nacher Jose C; Ueda Nobuhisa; Yamada Takuji; Kanehisa Minoru; Akutsu Tatsuya
Clustering under the line graph transformation: application to reaction network.
BMC bioinformatics 2004;5():207.
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2003: Hattori Masahiro; Okuno Yasushi; Goto Susumu; Kanehisa Minoru
Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.
Journal of the American Chemical Society 2003;125(39):11853-65.
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2003: Park Keun-Joon; Kanehisa Minoru
Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.
Bioinformatics (Oxford, England) 2003;19(13):1656-63.
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2003: Kanehisa Minoru; Bork Peer
Bioinformatics in the post-sequence era.
Nature genetics 2003;33 Suppl():305-10.
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2003: Hattori Masahiro; Okuno Yasushi; Goto Susumu; Kanehisa Minoru
Heuristics for chemical compound matching.
Genome informatics. International Conference on Genome Informatics 2003;14():144-53.
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2003: Aoki Kiyoko F; Yamaguchi Atsuko; Okuno Yasushi; Akutsu Tatsuya; Ueda Nobuhisa; Kanehisa Minoru; Mamitsuka Hiroshi
Efficient tree-matching methods for accurate carbohydrate database queries.
Genome informatics. International Conference on Genome Informatics 2003;14():134-43.
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2003: Yamanishi Y; Vert J-P; Nakaya A; Kanehisa M
Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i323-30.
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2002: Yoshimura Hidehisa; Yanagisawa Shuichi; Kanehisa Minoru; Ohmori Masayuki
Screening for the target gene of cyanobacterial cAMP receptor protein SYCRP1.
Molecular microbiology 2002;43(4):843-53.
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2002: Goto Susumu; Okuno Yasushi; Hattori Masahiro; Nishioka Takaaki; Kanehisa Minoru
LIGAND: database of chemical compounds and reactions in biological pathways.
Nucleic acids research 2002;30(1):402-4.
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2002: Kawashima Takeshi; Kawashima Shuichi; Kohara Yuji; Kanehisa Minoru; Makabe Kazuhiro W
Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.
Nucleic acids research 2002;30(1):119-20.
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2002: Kanehisa Minoru; Goto Susumu; Kawashima Shuichi; Nakaya Akihiro
The KEGG databases at GenomeNet.
Nucleic acids research 2002;30(1):42-6.
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2002: Yamanishi Yoshihiro; Itoh Masumi; Kanehisa Minoru
Extraction of organism groups from phylogenetic profiles using independent component analysis.
Genome informatics. International Conference on Genome Informatics 2002;13():61-70.
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2002: Kanehisa Minoru
The KEGG database.
Novartis Foundation symposium 2002;247():91-101; discussion 101-3, 119-28, 244-52.
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2001: Ohmori M; Ikeuchi M; Sato N; Wolk P; Kaneko T; Ogawa T; Kanehisa M; Goto S; Kawashima S; Okamoto S; Yoshimura H; Katoh H; Fujisawa T; Ehira S; Kamei A; Yoshihara S; Narikawa R; Tabat S
Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120.
DNA research : an international journal for rapid publication of reports on genes and genomes 2001;8(6):271-84.
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2001: Makabe K W; Kawashima T; Kawashima S; Minokawa T; Adachi A; Kawamura H; Ishikawa H; Yasuda R; Yamamoto H; Kondoh K; Arioka S; Sasakura Y; Kobayashi A; Yagi K; Shojima K; Kondoh Y; Kido S; Tsujinami M; Nishimura N; Takahashi M; Nakamura T; Kanehisa M; Ogasawara M; Nishikata T; Nishida H
Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development.
Development (Cambridge, England) 2001;128(13):2555-67.
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2001: Nakaya A; Goto S; Kanehisa M
Extraction of correlated gene clusters by multiple graph comparison.
Genome informatics. International Conference on Genome Informatics 2001;12():44-53.
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2000: Fujibuchi W; Ogata H; Matsuda H; Kanehisa M
Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.
Nucleic acids research 2000;28(20):4029-36.
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2000: Ogata H; Fujibuchi W; Goto S; Kanehisa M
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.
Nucleic acids research 2000;28(20):4021-8.
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2000: Kihara D; Kanehisa M
Tandem clusters of membrane proteins in complete genome sequences.
Genome research 2000;10(6):731-43.
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2000: Goto S; Nishioka T; Kanehisa M
LIGAND: chemical database of enzyme reactions.
Nucleic acids research 2000;28(1):380-2.
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2000: Kawashima S; Kanehisa M
AAindex: amino acid index database.
Nucleic acids research 2000;28(1):374.
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2000: Kawashima T; Kawashima S; Kanehisa M; Nishida H; Makabe K W
MAGEST: MAboya gene expression patterns and sequence tags.
Nucleic acids research 2000;28(1):133-5.
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2000: Kanehisa M; Goto S
KEGG: kyoto encyclopedia of genes and genomes.
Nucleic acids research 2000;28(1):27-30.
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2000: Kanehisa M
Pathway databases and higher order function.
Advances in protein chemistry 2000;54():381-408.
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1999: Goto S; Nishioka T; Kanehisa M
LIGAND database for enzymes, compounds and reactions.
Nucleic acids research 1999;27(1):377-9.
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1999: Kawashima S; Ogata H; Kanehisa M
AAindex: Amino Acid Index Database.
Nucleic acids research 1999;27(1):368-9.
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1999: Ogata H; Goto S; Sato K; Fujibuchi W; Bono H; Kanehisa M
KEGG: Kyoto Encyclopedia of Genes and Genomes.
Nucleic acids research 1999;27(1):29-34.
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1998: Kihara D; Shimizu T; Kanehisa M
Prediction of membrane proteins based on classification of transmembrane segments.
Protein engineering 1998;11(11):961-70.
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1998: Tomii K; Kanehisa M
A comparative analysis of ABC transporters in complete microbial genomes.
Genome research 1998;8(10):1048-59.
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1998: Ogata H; Goto S; Fujibuchi W; Kanehisa M
Computation with the KEGG pathway database.
Bio Systems 1998;47(1-2):119-28.
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1998: Bono H; Ogata H; Goto S; Kanehisa M
Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.
Genome research 1998;8(3):203-10.
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1998: Goto S; Nishioka T; Kanehisa M
LIGAND: chemical database for enzyme reactions.
Bioinformatics (Oxford, England) 1998;14(7):591-9.
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1998: Fujibuchi W; Goto S; Migimatsu H; Uchiyama I; Ogiwara A; Akiyama Y; Kanehisa M
DBGET/LinkDB: an integrated database retrieval system.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():683-94.
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1997: Kihara D; Kanehisa M; Takagi T
[Internet resources for genome research]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(17 Suppl):3090-9.
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1997: Tomii K; Kanehisa M
[Current status of pathway analysis]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(17 Suppl):3026-32.
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1997: Kanehisa M
A database for post-genome analysis.
Trends in genetics : TIG 1997;13(9):375-6.
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1997: Fujibuchi W; Kanehisa M
Prediction of gene expression specificity by promoter sequence patterns.
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(2):81-90.
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1997: Goto S; Bono H; Ogata H; Fujibuchi W; Nishioka T; Sato K; Kanehisa M
Organizing and computing metabolic pathway data in terms of binary relations.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1997;():175-86.
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1996: Ogata H; Fujibuchi W; Kanehisa M
The size differences among mammalian introns are due to the accumulation of small deletions.
FEBS letters 1996;390(1):99-103.
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1996: Tomii K; Kanehisa M
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins.
Protein engineering 1996;9(1):27-36.
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1995: Ogata H; Akiyama Y; Kanehisa M
A genetic algorithm based molecular modeling technique for RNA stem-loop structures.
Nucleic acids research 1995;23(3):419-26.
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1994: Mizuno M; Kanehisa M
Distribution profiles of GC content around the translation initiation site in different species.
FEBS letters 1994;352(1):7-10.
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1992: Ogiwara A; Uchiyama I; Seto Y; Kanehisa M
Construction of a dictionary of sequence motifs that characterize groups of related proteins.
Protein engineering 1992;5(6):479-88.
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1992: Horton P B; Kanehisa M
An assessment of neural network and statistical approaches for prediction of E. coli promoter sites.
Nucleic acids research 1992;20(16):4331-8.
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1988: Nakai K; Kidera A; Kanehisa M
Cluster analysis of amino acid indices for prediction of protein structure and function.
Protein engineering 1988;2(2):93-100.
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1988: Kanehisa M
A multivariate analysis method for discriminating protein secondary structural segments.
Protein engineering 1988;2(2):87-92.
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