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Fedor Karginov

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Chemicals & Drugs

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Protein Binding

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Escherichia coli

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Publications

TOP 3
Fedor V Karginov; Sihem Cheloufi; Mark M W Chong; Alexander Stark; Andrew D Smith; Gregory J Hannon
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.
Fedor V Karginov; Gregory J Hannon
The CRISPR system: small RNA-guided defense in bacteria and archaea.
Oded Rechavi; Yaniv Erlich; Hila Amram; Lena Flomenblit; Fedor V Karginov; Itamar Goldstein; Gregory J Hannon; Yoel Kloog
Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs.

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All Publications

2010: Fedor V Karginov; Sihem Cheloufi; Mark M W Chong; Alexander Stark; Andrew D Smith; Gregory J Hannon
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.
Molecular cell 2010;38(6):781-8.
2010: Fedor V Karginov; Gregory J Hannon
The CRISPR system: small RNA-guided defense in bacteria and archaea.
Molecular cell 2010;37(1):7-19.
2009: Oded Rechavi; Yaniv Erlich; Hila Amram; Lena Flomenblit; Fedor V Karginov; Itamar Goldstein; Gregory J Hannon; Yoel Kloog
Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs.
Genes & development 2009;23(16):1971-9.
2009: Tamar Uziel; Fedor V Karginov; Suqing Xie; Joel Parker; Yong-Dong Wang; Amar Gajjar; Lin He; David Ellison; Richard J Gilbertson; Gregory Hannon; Martine F Roussel
The miR-17~92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(8):2812-7.
2008: Henry J Haiser; Fedor V Karginov; Gregory J Hannon; Marie A Elliot
Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor.
Nucleic acids research 2008;36(3):732-41.
2007: Fedor V Karginov; Cecilia Conaco; Zhenyu Xuan; Bryan H Schmidt; Joel Parker; Gail Mandel; Gregory J Hannon
A biochemical approach to identifying microRNA targets.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(49):19291-6.
2006: Shuying Wang; Yaoxiong Hu; Michael T Overgaard; Fedor V Karginov; Olke C Uhlenbeck; David B McKay
The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold.
RNA (New York, N.Y.) 2006;12(6):959-67.
2005: Fedor V Karginov; Jonathan M Caruthers; YaoXiong Hu; David B McKay; Olke C Uhlenbeck
YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain.
The Journal of biological chemistry 2005;280(42):35499-505.
2004: Fedor V Karginov; Olke C Uhlenbeck
Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme.
Nucleic acids research 2004;32(10):3028-32.
2002: Karl Kossen; Fedor V Karginov; Olke C Uhlenbeck
The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.
Journal of molecular biology 2002;324(4):625-36.