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Donna Karolchik

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Kate Rosenbloom; Cricket A Sloan; Steven P Wilder; Matthew C Wong; Ann S Zweig; Vanessa M Kirkup; Robert M Kuhn; Katrina Learned; Brian T Lee; Jeffrey C Long; Morgan Maddren; Venkat S Malladi; Galt P Barber; Mark Diekhans; Timothy R Dreszer; Ruihua Fang; Rachel A Harte; David Haussler; Steven G Heitner; Donna Karolchik; W James Kent
ENCODE data in the UCSC Genome Browser: year 5 update.
Donna Karolchik; Angie S Hinrichs; W James Kent
The UCSC Genome Browser.
Donna Karolchik; Angie S Hinrichs; W James Kent
The UCSC Genome Browser.

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All Publications

2013: Kate Rosenbloom; Cricket A Sloan; Steven P Wilder; Matthew C Wong; Ann S Zweig; Vanessa M Kirkup; Robert M Kuhn; Katrina Learned; Brian T Lee; Jeffrey C Long; Morgan Maddren; Venkat S Malladi; Galt P Barber; Mark Diekhans; Timothy R Dreszer; Ruihua Fang; Rachel A Harte; David Haussler; Steven G Heitner; Donna Karolchik; W James Kent
ENCODE data in the UCSC Genome Browser: year 5 update.
Nucleic acids research 2013;41(Database issue):D56-63.
2012: Donna Karolchik; Angie S Hinrichs; W James Kent
The UCSC Genome Browser.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2012;Chapter 1():Unit1.4.
2011: Donna Karolchik; Angie S Hinrichs; W James Kent
The UCSC Genome Browser.
Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.] 2011;Chapter 18():Unit18.6.
2011: J Zachary Sanborn; Stephen C Benz; Brian Craft; Christopher Szeto; Kord M Kober; Laurence Meyer; Charles J Vaske; Mary Goldman; Kayla E Smith; Robert M Kuhn; Donna Karolchik; W James Kent; Joshua M Stuart; David Haussler; Jingchun Zhu
The UCSC Cancer Genomics Browser: update 2011.
Nucleic acids research 2011;39(Database issue):D951-9.
2011: Brian J Raney; Melissa S Cline; Kate Rosenbloom; Timothy R Dreszer; Katrina Learned; Galt P Barber; Laurence R Meyer; Cricket A Sloan; Venkat S Malladi; Krishna M Roskin; Bernard B Suh; Angie S Hinrichs; Hiram Clawson; Ann S Zweig; Vanessa Kirkup; Pauline A Fujita; Brooke L Rhead; Kayla E Smith; Andy Pohl; Robert M Kuhn; Donna Karolchik; David Haussler; W James Kent
ENCODE whole-genome data in the UCSC genome browser (2011 update).
Nucleic acids research 2011;39(Database issue):D871-5.
2011: Pauline A Fujita; Brooke L Rhead; Ann S Zweig; Angie S Hinrichs; Donna Karolchik; Melissa S Cline; Mary Goldman; Galt P Barber; Hiram Clawson; Antonio Coelho; Mark Diekhans; Timothy R Dreszer; Belinda Giardine; Rachel A Harte; Jennifer Hillman-Jackson; Fan Hsu; Vanessa Kirkup; Robert M Kuhn; Katrina Learned; Chin H Li; Laurence R Meyer; Andy Pohl; Brian J Raney; Kate Rosenbloom; Kayla E Smith; David Haussler; W James Kent
The UCSC Genome Browser database: update 2011.
Nucleic acids research 2011;39(Database issue):D876-82.
2010: W James Kent; Ann S Zweig; Galt P Barber; Angie S Hinrichs; Donna Karolchik
BigWig and BigBed: enabling browsing of large distributed datasets.
Bioinformatics (Oxford, England) 2010;26(17):2204-7.
2010: Kate Rosenbloom; Timothy R Dreszer; Michael Pheasant; Galt P Barber; Laurence R Meyer; Andy Pohl; Brian J Raney; Ting Wang; Angie S Hinrichs; Ann S Zweig; Pauline A Fujita; Katrina Learned; Brooke L Rhead; Kayla E Smith; Robert M Kuhn; Donna Karolchik; David Haussler; W James Kent
ENCODE whole-genome data in the UCSC Genome Browser.
Nucleic acids research 2010;38(Database issue):D620-5.
2010: Brooke L Rhead; Donna Karolchik; Robert M Kuhn; Angie S Hinrichs; Ann S Zweig; Pauline A Fujita; Mark Diekhans; Kayla E Smith; Kate Rosenbloom; Brian J Raney; Andy Pohl; Michael Pheasant; Laurence R Meyer; Katrina Learned; Fan Hsu; Jennifer Hillman-Jackson; Rachel A Harte; Belinda Giardine; Timothy R Dreszer; Hiram Clawson; Galt P Barber; David Haussler; W James Kent
The UCSC Genome Browser database: update 2010.
Nucleic acids research 2010;38(Database issue):D613-9.
2009: Donna Karolchik; Angie S Hinrichs; W James Kent
The UCSC Genome Browser.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2009;Chapter 1():Unit1.4.
2009: Jingchun Zhu; J Zachary Sanborn; Stephen Benz; Christopher Szeto; Fan Hsu; Robert M Kuhn; Donna Karolchik; John Archie; Marc E Lenburg; Laura J Esserman; W James Kent; David Haussler; Ting Wang
The UCSC Cancer Genomics Browser.
Nature methods 2009;6(4):239-40.
2008: Ann S Zweig; Donna Karolchik; Robert M Kuhn; David Haussler; W James Kent
UCSC genome browser tutorial.
Genomics 2008;92(2):75-84.
2008: Simon N Twigger; Kim D Pruitt; Xosé M Fernández-Suárez; Donna Karolchik; Kim C Worley; Donna R Maglott; Garth Brown; George Weinstock; Richard A Gibbs; Jim Kent; Ewan Birney; Howard J Jacob
What everybody should know about the rat genome and its online resources.
Nature genetics 2008;40(5):523-7.
2008: Mary E Mangan; Jennifer M Williams; Scott M Lathe; Donna Karolchik; warren lathe
UCSC genome browser: deep support for molecular biomedical research.
Biotechnology annual review 2008;14():63-108.
2008: Donna Karolchik; Robert M Kuhn; Robert Baertsch; Galt P Barber; Hiram Clawson; Mark Diekhans; Belinda Giardine; Rachel A Harte; Angie S Hinrichs; Fan Hsu; K M Kober; Webb Miller; Jan Skov Pedersen; Andy Pohl; Brian J Raney; Brooke L Rhead; Kate Rosenbloom; Kayla E Smith; M Stanke; A Thakkapallayil; Heather Trumbower; T Wang; Ann S Zweig; David Haussler; W James Kent
The UCSC Genome Browser Database: 2008 update.
Nucleic acids research 2008;36(Database issue):D773-9.
2007: Donna Karolchik; Angie S Hinrichs; W James Kent
The UCSC Genome Browser.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2007;Chapter 1():Unit 1.4.
2007: Donna Karolchik; Gill Bejerano; Angie S Hinrichs; Robert M Kuhn; Webb Miller; Kate Rosenbloom; Ann S Zweig; David Haussler; W James Kent
Comparative genomic analysis using the UCSC genome browser.
Methods in molecular biology (Clifton, N.J.) 2007;395():17-34.
2007: Daryl J Thomas; Kate Rosenbloom; Hiram Clawson; Angie S Hinrichs; Heather Trumbower; Brian J Raney; Donna Karolchik; Galt P Barber; Rachel A Harte; Jennifer Hillman-Jackson; Robert M Kuhn; Brooke L Rhead; Kayla E Smith; Archana Thakkapallayil; Ann S Zweig; David Haussler; W James Kent
The ENCODE Project at UC Santa Cruz.
Nucleic acids research 2007;35(Database issue):D663-7.
2007: Robert M Kuhn; Donna Karolchik; Ann S Zweig; Heather Trumbower; Daryl J Thomas; A Thakkapallayil; Charles W Sugnet; M Stanke; Kayla E Smith; Adam Siepel; Kate Rosenbloom; Brooke L Rhead; Brian J Raney; Andy Pohl; Jan Skov Pedersen; Fan Hsu; Angie S Hinrichs; Rachel A Harte; Mark Diekhans; Hiram Clawson; Gill Bejerano; Galt P Barber; Robert Baertsch; David Haussler; W James Kent
The UCSC genome browser database: update 2007.
Nucleic acids research 2007;35(Database issue):D668-73.
2006: Angie S Hinrichs; Donna Karolchik; Robert Baertsch; Galt P Barber; Gill Bejerano; Hiram Clawson; Mark Diekhans; Terrence S Furey; Rachel A Harte; Fan Hsu; J Hillman-Jackson; Robert M Kuhn; Jan Skov Pedersen; Andy Pohl; Brian J Raney; Kate Rosenbloom; Adam Siepel; Kayla E Smith; Charles W Sugnet; A Sultan-Qurraie; Daryl J Thomas; Heather Trumbower; RJ Weber; M Weirauch; Ann S Zweig; David Haussler; W James Kent
The UCSC Genome Browser Database: update 2006.
Nucleic acids research 2006;34(Database issue):D590-8.
2005: W James Kent; Fan Hsu; Donna Karolchik; Robert M Kuhn; Hiram Clawson; Heather Trumbower; David Haussler
Exploring relationships and mining data with the UCSC Gene Sorter.
Genome research 2005;15(5):737-41.
2005: Fan Hsu; Tom H Pringle; Robert M Kuhn; Donna Karolchik; Mark Diekhans; David Haussler; W James Kent
The UCSC Proteome Browser.
Nucleic acids research 2005;33(Database issue):D454-8.
2004: Donna Karolchik; Angie S Hinrichs; Terrence S Furey; Krishna M Roskin; Charles W Sugnet; David Haussler; W James Kent
The UCSC Table Browser data retrieval tool.
Nucleic acids research 2004;32(Database issue):D493-6.
2003: Donna Karolchik; Robert Baertsch; Mark Diekhans; Terrence S Furey; Angie S Hinrichs; Y T Lu; Krishna M Roskin; M Schwartz; Charles W Sugnet; Daryl J Thomas; RJ Weber; David Haussler; W James Kent
The UCSC Genome Browser Database.
Nucleic acids research 2003;31(1):51-4.