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Tsutomu Katayama

Research Profile

Chemicals & Drugs

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Escherichia coli

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TOP 3
Kazutoshi Kasho; Tsutomu Katayama
DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation.
Shogo Ozaki; Yasuhisa Hayashi; Erika Miyazaki; Yasunori Noguchi; Tsutomu Katayama
Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex.
Shogo Ozaki; Masahiro Nishimura; Yasunori Noguchi; Tsutomu Katayama
Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif.

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All Publications

2013: Kazutoshi Kasho; Tsutomu Katayama
DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(3):936-41.
2012: Shogo Ozaki; Yasuhisa Hayashi; Erika Miyazaki; Yasunori Noguchi; Tsutomu Katayama
Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex.
The Journal of biological chemistry 2012;287(44):37458-71.
2012: Shogo Ozaki; Masahiro Nishimura; Yasunori Noguchi; Tsutomu Katayama
Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif.
Journal of structural biology 2012;179(2):242-50.
2012: Shogo Ozaki; Tsutomu Katayama
Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation.
Nucleic acids research 2012;40(4):1648-65.
2011: Kenji Keyamura; Tsutomu Katayama
DnaA protein DNA-binding domain binds to Hda protein to promote inter-AAA+ domain interaction involved in regulatory inactivation of DnaA.
The Journal of biological chemistry 2011;286(33):29336-46.
2011: Godefroid Charbon; Leise Riber; Malene Cohen; Ole Skovgaard; Kazuyuki Fujimitsu; Tsutomu Katayama; Anders Løbner-Olesen
Suppressors of DnaA(ATP) imposed overinitiation in Escherichia coli.
Molecular microbiology 2011;79(4):914-28.
2010: Kenta Nakamura; Tsutomu Katayama
Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs.
Molecular microbiology 2010;76(2):302-17.
2010: Tsutomu Katayama; Shogo Ozaki; Kenji Keyamura; Kazuyuki Fujimitsu
Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.
Nature reviews. Microbiology 2010;8(3):163-70.
2009: Kenji Keyamura; Yoshito Abe; Masahiro Higashi; Tadashi Ueda; Tsutomu Katayama
DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading.
The Journal of biological chemistry 2009;284(37):25038-50.
2009: Shogo Ozaki; Tsutomu Katayama
DnaA structure, function, and dynamics in the initiation at the chromosomal origin.
Plasmid 2009;62(2):71-82.
2009: Kazuyuki Fujimitsu; Takayuki Senriuchi; Tsutomu Katayama
Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA.
Genes & development 2009;23(10):1221-33.
2008: Kazuyuki Fujimitsu; Masayuki Su'etsugu; Yoko Yamaguchi; Kensaku Mazda; Nisi Fu; Hironori Kawakami; Tsutomu Katayama
Modes of overinitiation, dnaA gene expression, and inhibition of cell division in a novel cold-sensitive hda mutant of Escherichia coli.
Journal of bacteriology 2008;190(15):5368-81.
2008: Shogo Ozaki; Hironori Kawakami; Kenta Nakamura; Norie Fujikawa; Wataru Kagawa; Sam-Yong Park; Shigeyuki Yokoyama; Hitoshi Kurumizaka; Tsutomu Katayama
A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin.
The Journal of biological chemistry 2008;283(13):8351-62.
2008: Tsutomu Katayama
Roles for the AAA+ motifs of DnaA in the initiation of DNA replication.
Biochemical Society transactions 2008;36(Pt 1):78-82.
2007: Kenji Keyamura; Norie Fujikawa; Takuma Ishida; Shogo Ozaki; Masayuki Su'etsugu; Kazuyuki Fujimitsu; Wataru Kagawa; Shigeyuki Yokoyama; Hitoshi Kurumizaka; Tsutomu Katayama
The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes.
Genes & development 2007;21(16):2083-99.
2007: Yoshito Abe; Noriko Watanabe; Yuichiro Yoshida; Fumi Ebata; Tsutomu Katayama; Tadashi Ueda
Assignment of 1H, 13C and 15N resonances of N-terminal domain of DnaA protein.
Biomolecular NMR assignments 2007;1(1):57-9.
2007: Yoshito Abe; Takaaki Jo; Yusaku Matsuda; Chika Matsunaga; Tsutomu Katayama; Tadashi Ueda
Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC.
The Journal of biological chemistry 2007;282(24):17816-27.
2006: Hironori Kawakami; Shogo Ozaki; Shigeo Suzuki; Kenta Nakamura; Takayuki Senriuchi; Masayuki Su'etsugu; Kazuyuki Fujimitsu; Tsutomu Katayama
The exceptionally tight affinity of DnaA for ATP/ADP requires a unique aspartic acid residue in the AAA+ sensor 1 motif.
Molecular microbiology 2006;62(5):1310-24.
2006: Hironori Kawakami; Masayuki Su'etsugu; Tsutomu Katayama
An isolated Hda-clamp complex is functional in the regulatory inactivation of DnaA and DNA replication.
Journal of structural biology 2006;156(1):220-9.
2006: Shogo Ozaki; Kazuyuki Fujimitsu; Hitoshi Kurumizaka; Tsutomu Katayama
The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner.
Genes to cells : devoted to molecular & cellular mechanisms 2006;11(4):425-38.
2006: Tomotake Ote; Masayuki Hashimoto; Yoshiho Ikeuchi; Masayuki Su'etsugu; Tsutomu Suzuki; Tsutomu Katayama; Jun-ichi Kato
Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.
Molecular microbiology 2006;59(1):265-75.
2005: Hironori Kawakami; Kenji Keyamura; Tsutomu Katayama
Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.
The Journal of biological chemistry 2005;280(29):27420-30.
2005: Masayuki Su'etsugu; Toh-Ru Shimuta; Takuma Ishida; Hironori Kawakami; Tsutomu Katayama
Protein associations in DnaA-ATP hydrolysis mediated by the Hda-replicase clamp complex.
The Journal of biological chemistry 2005;280(8):6528-36.
2005: Seijiro Shioi; Toyoyuki Ose; Katsumi Maenaka; Mitsunori Shiroishi; Yoshito Abe; Daisuke Kohda; Tsutomu Katayama; Tadashi Ueda
Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.
Biochemical and biophysical research communications 2005;326(4):766-76.
2005: Masayuki Hashimoto; Toshiharu Ichimura; Hiroshi Mizoguchi; Kimie Tanaka; Kazuyuki Fujimitsu; Kenji Keyamura; Tomotake Ote; Takehiro Yamakawa; Yukiko Yamazaki; Hideo Mori; Tsutomu Katayama; Jun-ichi Kato
Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.
Molecular microbiology 2005;55(1):137-49.
2004: Toh-ru Shimuta; Kiyotaka Nakano; Yoko Yamaguchi; Shogo Ozaki; Kazuyuki Fujimitsu; Chika Matsunaga; Kenji Noguchi; Akiko Emoto; Tsutomu Katayama
Novel heat shock protein HspQ stimulates the degradation of mutant DnaA protein in Escherichia coli.
Genes to cells : devoted to molecular & cellular mechanisms 2004;9(12):1151-66.
2004: Tsutomu Katayama
[AAA+ superfamily proteins involved in initiation of chromosomal replication in E. coli].
Seikagaku. The Journal of Japanese Biochemical Society 2004;76(11):1440-3.
2004: Takuma Ishida; Nobuyoshi Akimitsu; Tamami Kashioka; Masakazu Hatano; Toshio Kubota; Yasuyuki Ogata; Kazuhisa Sekimizu; Tsutomu Katayama
DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.
The Journal of biological chemistry 2004;279(44):45546-55.
2004: Kazuyuki Fujimitsu; Tsutomu Katayama
Reactivation of DnaA by DNA sequence-specific nucleotide exchange in vitro.
Biochemical and biophysical research communications 2004;322(2):411-9.
2004: Masayuki Su'etsugu; Makoto Takata; Toshio Kubota; Yusaku Matsuda; Tsutomu Katayama
Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex.
Genes to cells : devoted to molecular & cellular mechanisms 2004;9(6):509-22.
2003: Yuichiro Yoshida; Takayuki Obita; Y Kokusho; T Ohmura; Tsutomu Katayama; Tadashi Ueda; Taiji Imoto
Identification of the region in Escherichia coli DnaA protein required for specific recognition of the DnaA box.
Cellular and molecular life sciences : CMLS 2003;60(9):1998-2008.
2003: Masayuki Su'etsugu; Akiko Emoto; Kazuyuki Fujimitsu; Kenji Keyamura; Tsutomu Katayama
Transcriptional control for initiation of chromosomal replication in Escherichia coli: fluctuation of the level of origin transcription ensures timely initiation.
Genes to cells : devoted to molecular & cellular mechanisms 2003;8(9):731-45.
2003: Kumiko Higuchi; Tsutomu Katayama; Shigenori Iwai; Masumi Hidaka; Takashi Horiuchi; Hisaji Maki
Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro.
Genes to cells : devoted to molecular & cellular mechanisms 2003;8(5):437-49.
2003: Norie Fujikawa; Hitoshi Kurumizaka; Osamu Nureki; Takaho Terada; Mikako Shirouzu; Tsutomu Katayama; Shigeyuki Yokoyama
Structural basis of replication origin recognition by the DnaA protein.
Nucleic acids research 2003;31(8):2077-86.
2002: Takayuki Obita; Takafumi Iwura; Masayuki Su'etsugu; Yoichiro Yoshida; Yoshitsugu Tanaka; Tsutomu Katayama; Tadashi Ueda; Taiji Imoto
Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain.
Biochemical and biophysical research communications 2002;299(1):42-8.
2002: Satoshi Nishida; Kazuyuki Fujimitsu; Kazuhisa Sekimizu; Tadahiro Ohmura; Tadashi Ueda; Tsutomu Katayama
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo.
The Journal of biological chemistry 2002;277(17):14986-95.
2001: Toshio Kubota; Yushi Ito; Kazuhisa Sekimizu; Mitsuo Tagaya; Tsutomu Katayama
DnaA protein Lys-415 is close to the ATP-binding site: ATP-pyridoxal affinity labeling.
Biochemical and biophysical research communications 2001;288(5):1141-8.
2001: Hironori Kawakami; Takafumi Iwura; Makoto Takata; Kazuhisa Sekimizu; S Hiraga; Tsutomu Katayama
Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA.
Molecular genetics and genomics : MGG 2001;266(2):167-79.
2001: Jun-ichi Kato; Tsutomu Katayama
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli.
The EMBO journal 2001;20(15):4253-62.
2001: Tsutomu Katayama
Feedback controls restrain the initiation of Escherichia coli chromosomal replication.
Molecular microbiology 2001;41(1):9-17.
2001: Masayuki Su'etsugu; Hironori Kawakami; K Kurokawa; Toshio Kubota; Makoto Takata; Tsutomu Katayama
DNA replication-coupled inactivation of DnaA protein in vitro: a role for DnaA arginine-334 of the AAA+ Box VIII motif in ATP hydrolysis.
Molecular microbiology 2001;40(2):376-86.
2001: Tsutomu Katayama; Kazuyuki Fujimitsu; T Ogawa
Multiple pathways regulating DnaA function in Escherichia coli: distinct roles for DnaA titration by the datA locus and the regulatory inactivation of DnaA.
Biochimie 2001;83(1):13-7.
2000: Makoto Takata; L Guo; Tsutomu Katayama; M Hase; Y Seyama; T Miki; Kazuhisa Sekimizu
Mutant DnaA proteins defective in duplex opening of oriC, the origin of chromosomal DNA replication in Escherichia coli.
Molecular microbiology 2000;35(2):454-62.
1999: K Kurokawa; Satoshi Nishida; Akiko Emoto; Kazuhisa Sekimizu; Tsutomu Katayama
Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli.
The EMBO journal 1999;18(23):6642-52.
1999: Tsutomu Katayama; Kazuhisa Sekimizu
Inactivation of Escherichia coli DnaA protein by DNA polymerase III and negative regulations for initiation of chromosomal replication.
Biochimie 1999;81(8-9):835-40.
1999: Tsutomu Katayama
[Novel function of DNA polymerase in negative regulation of initiation of chromosomal replication].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1999;44(7):845-53.
1998: Tohru Mizushima; T Takaki; Toshio Kubota; T Tsuchiya; T Miki; Tsutomu Katayama; Kazuhisa Sekimizu
Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo.
The Journal of biological chemistry 1998;273(33):20847-51.
1998: Tsutomu Katayama; Toshio Kubota; K Kurokawa; E Crooke; Kazuhisa Sekimizu
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.
Cell 1998;94(1):61-71.
1998: K Kurokawa; Tohru Mizushima; Toshio Kubota; T Tsuchiya; Tsutomu Katayama; Kazuhisa Sekimizu
A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli.
Biochemical and biophysical research communications 1998;243(1):90-5.
1997: Tsutomu Katayama; Makoto Takata; Kazuhisa Sekimizu
CedA is a novel Escherichia coli protein that activates the cell division inhibited by chromosomal DNA over-replication.
Molecular microbiology 1997;26(4):687-97.
1997: Tsutomu Katayama; Nobuyoshi Akimitsu; Tohru Mizushima; T Miki; Kazuhisa Sekimizu
Overinitiation of chromosome replication in the Escherichia coli dnaAcos mutant depends on activation of oriC function by the dam gene product.
Molecular microbiology 1997;25(4):661-70.
1997: Tohru Mizushima; Satoshi Nishida; K Kurokawa; Tsutomu Katayama; T Miki; Kazuhisa Sekimizu
Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli.
The EMBO journal 1997;16(12):3724-30.
1997: Toshio Kubota; Tsutomu Katayama; Yushi Ito; Tohru Mizushima; Kazuhisa Sekimizu
Conformational transition of DnaA protein by ATP: structural analysis of DnaA protein, the initiator of Escherichia coli chromosome replication.
Biochemical and biophysical research communications 1997;232(1):130-5.
1996: Tsutomu Katayama; Toshio Kubota; M Takata; Nobuyoshi Akimitsu; Kazuhisa Sekimizu
Disruption of the hslU gene, which encodes an ATPase subunit of the eukaryotic 26S proteasome homolog in Escherichia coli, suppresses the temperature-sensitive dnaA46 mutation.
Biochemical and biophysical research communications 1996;229(1):219-24.
1996: Tohru Mizushima; S Sasaki; H Ohishi; M Kobayashi; Tsutomu Katayama; T Miki; M Maeda; Kazuhisa Sekimizu
Molecular design of inhibitors of in vitro oriC DNA replication based on the potential to block the ATP binding of DnaA protein.
The Journal of biological chemistry 1996;271(41):25178-83.
1996: Tohru Mizushima; Y Ishikawa; E Obana; M Hase; Toshio Kubota; Tsutomu Katayama; T Kunitake; E Watanabe; Kazuhisa Sekimizu
Influence of cluster formation of acidic phospholipids on decrease in the affinity for ATP of DnaA protein.
The Journal of biological chemistry 1996;271(7):3633-8.
1995: M Hase; Tohru Mizushima; Tsutomu Katayama; Kazuhisa Sekimizu
Isolation and characterization of inhibitory factors of DNA polymerase III holoenzyme from Escherichia coli.
FEMS microbiology letters 1995;130(2-3):215-20.