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Jürg Bähler

Research Profile

Living Beings

Schizosaccharomyces

Chemicals & Drugs

Physiology

Devices

Oligonucleotide Array Sequence Analysis

Procedures

Gene Expression Profiling

Genes & Molecular Sequences

Anatomy

Disorders

Oxidative Stress

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Publications

TOP 3
Samuel Marguerat; Jürg Bähler
Coordinating genome expression with cell size.
Samuel Marguerat; Alexander Schmidt; Ruedi Aebersold; Wei Chen; Sandra Codlin; Jürg Bähler
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Jürg Bähler
Genome regulation and evolution analysed by next-generation sequencing.

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All Publications

2012: Samuel Marguerat; Jürg Bähler
Coordinating genome expression with cell size.
Trends in genetics : TIG 2012;28(11):560-5.
2012: Samuel Marguerat; Alexander Schmidt; Ruedi Aebersold; Wei Chen; Sandra Codlin; Jürg Bähler
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Cell 2012;151(3):671-83.
2012: Jürg Bähler
Genome regulation and evolution analysed by next-generation sequencing.
Seminars in cell & developmental biology 2012;23(2):191.
2012: Sophie R Atkinson; Samuel Marguerat; Jürg Bähler
Exploring long non-coding RNAs through sequencing.
Seminars in cell & developmental biology 2012;23(2):200-5.
2012: Yu Wang; Stephen Watt; John R Yates; Jürg Bähler; Haitong Hou; Scott P Kallgren; Karen Kuntz; Luis López-Maury; Chun Ma; Matthew J O'Connell; Bharat D Reddy; Yang Shi; James Thompson; Songtao Jia
Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast.
The Journal of biological chemistry 2012;287(6):4386-93.
2012: Vera Cherkasova; Dagmar Bacikova; Jürg Bähler; Kevin Pridham; Luis Lopez Maury; Richard J Maraia
Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p.
Molecular biology of the cell 2012;23(3):480-91.
2012: Daniel H Lackner; Michael W Schmidt; Dieter A Wolf; Shuangding Wu; Jürg Bähler
Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast.
Genome biology 2012;13(4):R25.
2011: Caroline Lemieux; Samuel Marguerat; Jürg Bähler; Nicolas Barbezier; Jennifer Lafontaine; François Bachand
A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein.
Molecular cell 2011;44(1):108-19.
2011: Christine M Kiely; Hiten D Madhani; Samuel Marguerat; Jürg Bähler; Jennifer F Garcia; fred winston
Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe.
Molecular and cellular biology 2011;31(20):4193-204.
2011: Jude Beaudoin; Christopher J Chang; Sheel C Dodani; Brigitte Guérin; Raphaël Ioannoni; Samia Ait-Mohand; Jürg Bähler; Luis López-Maury; Simon Labbé
Mfc1 is a novel forespore membrane copper transporter in meiotic and sporulating cells.
The Journal of biological chemistry 2011;286(39):34356-72.
2011: Vera Pancaldi; Jürg Bähler
In silico characterization and prediction of global protein-mRNA interactions in yeast.
Nucleic acids research 2011;39(14):5826-36.
2011: Dominique Helmlinger; Samuel Marguerat; Danielle L Swaney; Judit Villén; Jürg Bähler; Steven P Gygi; Fred Winston
Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex.
The EMBO journal 2011;30(14):2843-52.
2011: Suranjana Guha; Luis López-Maury; Michael Shaw; Jürg Bähler; Chris J Norbury; Vishwas R Agashe
Transcriptional and cellular responses to defective mitochondrial proteolysis in fission yeast.
Journal of molecular biology 2011;408(2):222-37.
2011: Brian T Wilhelm; Sofia Aligianni; Sandra Codlin; Samuel Marguerat; Stephen Watt; Jürg Bähler
Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast.
Genome biology 2011;12(8):R82.
2011: Martin Převorovský; Martina Ptáčková; František Půta; Sophie R Atkinson; Petr Folk; Kathleen Gould; Janel R McLean; Jürg Bähler
N-termini of fungal CSL transcription factors are disordered, enriched in regulatory motifs and inhibit DNA binding in fission yeast.
PloS one 2011;6(8):e23650.
2011: Klavs R Hansen; Idit Hazan; Sreenath Shanker; Stephen Watt; Janne Verhein-Hansen; Jürg Bähler; Robert A Martienssen; Janet F Partridge; Amikam Cohen; Geneviève Thon
H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases.
PLoS genetics 2011;7(1):e1001268.
2010: Naoki Nemoto; Tsuyoshi Udagawa; Takahiro Ohira; Li Jiang; Kouji Hirota; Caroline R M Wilkinson; Jürg Bähler; Nic Jones; Kunihiro Ohta; Ronald C Wek; Katsura Asano
The roles of stress-activated Sty1 and Gcn2 kinases and of the protooncoprotein homologue Int6/eIF3e in responses to endogenous oxidative stress during histidine starvation.
Journal of molecular biology 2010;404(2):183-201.
2010: Jacob Zhurinsky; Klaus Leonhard; Stephen Watt; Samuel Marguerat; Jürg Bähler; Paul Nurse
A coordinated global control over cellular transcription.
Current biology : CB 2010;20(22):2010-5.
2010: Wei-Ling Wen; Abigail L Stevenson; Chun-Yu Wang; Hsiang-Ju Chen; Stephen E Kearsey; Chris J Norbury; Stephen Watt; Jürg Bähler; Shao-Win Wang
Vgl1, a multi-KH domain protein, is a novel component of the fission yeast stress granules required for cell survival under thermal stress.
Nucleic acids research 2010;38(19):6555-66.
2010: Lee Kiang; Christian Heichinger; Stephen Watt; Jürg Bähler; Paul Nurse
Specific replication origins promote DNA amplification in fission yeast.
Journal of cell science 2010;123(Pt 18):3047-51.
2010: Olivier St-André; Caroline Lemieux; Audrey Perreault; Daniel H Lackner; Jürg Bähler; François Bachand
Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast.
The Journal of biological chemistry 2010;285(36):27859-68.
2010: Isabelle Kaufmann; Eleanor White; Abul Azad; Samuel Marguerat; Jürg Bähler; Nicholas J Proudfoot
Transcriptional activation of the general amino acid permease gene per1 by the histone deacetylase Clr6 Is regulated by Oca2 kinase.
Molecular and cellular biology 2010;30(13):3396-410.
2010: Vera Pancaldi; Falk Schubert; Jürg Bähler
Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast.
Molecular bioSystems 2010;6(3):543-52.
2010: Samuel Marguerat; Jürg Bähler
RNA-seq: from technology to biology.
Cellular and molecular life sciences : CMLS 2010;67(4):569-79.
2010: Jean-François Lemay; Annie D'Amours; Caroline Lemieux; Daniel H Lackner; Valérie G St-Sauveur; Jürg Bähler; François Bachand
The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs.
Molecular cell 2010;37(1):34-45.
2009: Nicholas J Croucher; Maria C Fookes; Timothy T Perkins; Daniel J Turner; Samuel B Marguerat; Thomas Keane; Michael A Quail; Miao He; Sammey Assefa; Jürg Bähler; Robert Kingsley; Julian Parkhill; Stephen D Bentley; Gordon Dougan; Nicholas R Thomson
A simple method for directional transcriptome sequencing using Illumina technology.
Nucleic acids research 2009;37(22):e148.
2009: Helen Tinline-Purvis; Andrew P Savory; Jason K Cullen; Anoushka Davé; Jennifer Moss; Wendy L Bridge; Samuel Marguerat; Jürg Bähler; Jiannis Ragoussis; Richard Mott; Carol A Walker; Timothy C Humphrey
Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast.
The EMBO journal 2009;28(21):3400-12.
2009: Sofia Aligianni; Daniel H Lackner; Steffi Klier; Gabriella Rustici; Brian T Wilhelm; Samuel Marguerat; Sandra Codlin; Alvis Brazma; Robertus A M de Bruin; Jürg Bähler
The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback.
PLoS genetics 2009;5(8):e1000626.
2009: Lee Kiang; Christian Heichinger; Stephen Watt; Jürg Bähler; Paul Nurse
Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast.
Molecular and cellular biology 2009;29(15):4025-32.
2008: Dominique Helmlinger; Samuel Marguerat; Judit Villén; Steven P Gygi; Jürg Bähler; fred winston
The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8.
Genes & development 2008;22(22):3184-95.
2008: Samuel Marguerat; Brian T Wilhelm; Jürg Bähler
Next-generation sequencing: applications beyond genomes.
Biochemical Society transactions 2008;36(Pt 5):1091-6.
2008: Katja Ludin; Juan Mata; Stephen Watt; Elisabeth Lehmann; Jürg Bähler; Jürg Kohli
Sites of strong Rec12/Spo11 binding in the fission yeast genome are associated with meiotic recombination and with centromeres.
Chromosoma 2008;117(5):431-44.
2008: Tsuyoshi Udagawa; Naoki Nemoto; Caroline R M Wilkinson; Jana Narashimhan; Li Jiang; Stephen Watt; Aaron Zook; Nic Jones; Ronald C Wek; Jürg Bähler; Katsura Asano
Int6/eIF3e promotes general translation and Atf1 abundance to modulate Sty1 MAPK-dependent stress response in fission yeast.
The Journal of biological chemistry 2008;283(32):22063-75.
2008: Brendon J Monahan; Judit Villén; Samuel Marguerat; Jürg Bähler; Steven P Gygi; fred winston
Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast.
Nature structural & molecular biology 2008;15(8):873-80.
2008: Luis López-Maury; Samuel Marguerat; Jürg Bähler
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
Nature reviews. Genetics 2008;9(8):583-93.
2008: Daniel C Jeffares; Christopher J Penkett; Jürg Bähler
Rapidly regulated genes are intron poor.
Trends in genetics : TIG 2008;24(8):375-8.
2008: Brian T Wilhelm; Samuel Marguerat; Stephen Watt; Falk Schubert; Valerie Wood; Ian Goodhead; Christopher J Penkett; Jane Rogers; Jürg Bähler
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.
Nature 2008;453(7199):1239-43.
2008: Wolfgang Reiter; Stephen Watt; Keren Dawson; Clare L Lawrence; Jürg Bähler; Nic Jones; Caroline R M Wilkinson
Fission yeast MAP kinase Sty1 is recruited to stress-induced genes.
The Journal of biological chemistry 2008;283(15):9945-56.
2008: Alexandre Mercier; Stephen Watt; Jürg Bähler; Simon Labbé
Key function for the CCAAT-binding factor Php4 to regulate gene expression in response to iron deficiency in fission yeast.
Eukaryotic cell 2008;7(3):493-508.
2008: Samantha J Dainty; Ciara A Kennedy; Stephen Watt; Jürg Bähler; Simon K Whitehall
Response of Schizosaccharomyces pombe to zinc deficiency.
Eukaryotic cell 2008;7(3):454-64.
2008: Ida Miklos; Zsolt Szilagyi; Stephen Watt; Erika Zilahi; Gyula Batta; Zsuzsa Antunovics; Klara Enczi; Jürg Bähler; Matthias Sipiczki
Genomic expression patterns in cell separation mutants of Schizosaccharomyces pombe defective in the genes sep10 ( + ) and sep15 ( + ) coding for the Mediator subunits Med31 and Med8.
Molecular genetics and genomics : MGG 2008;279(3):225-38.
2008: Stephen Watt; Juan Mata; Luis López-Maury; Samuel Marguerat; Gavin Burns; Jürg Bähler
urg1: a uracil-regulatable promoter system for fission yeast with short induction and repression times.
PloS one 2008;3(1):e1428.
2008: Shao-Win Wang; Abigail L Stevenson; Stephen E Kearsey; Stephen Watt; Jürg Bähler
Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing.
Molecular and cellular biology 2008;28(2):656-65.
2008: Dongrong Chen; Caroline R M Wilkinson; Stephen Watt; Christopher J Penkett; W Mark Toone; Nic Jones; Jürg Bähler
Multiple pathways differentially regulate global oxidative stress responses in fission yeast.
Molecular biology of the cell 2008;19(1):308-17.
2008: Bobby-Joe Breitkreutz; Chris Stark; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Michael Livstone; Rose Oughtred; Daniel H Lackner; Jürg Bähler; Valerie Wood; Kara Dolinski; Mike Tyers
The BioGRID Interaction Database: 2008 update.
Nucleic acids research 2008;36(Database issue):D637-40.
2007: Antonis Kirmizis; Helena Santos-Rosa; Christopher J Penkett; Singer Michael; Michiel Vermeulen; Matthias Mann; Jürg Bähler; Roland D Green; Tony Kouzarides
Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation.
Nature 2007;449(7164):928-32.
2007: Matthew Gordon; Derick G Holt; Anil Panigrahi; Brian T Wilhelm; Hediye Erdjument-Bromage; Paul Tempst; Jürg Bähler; Bradley R Cairns
Genome-wide dynamics of SAPHIRE, an essential complex for gene activation and chromatin boundaries.
Molecular and cellular biology 2007;27(11):4058-69.
2007: Daniel H Lackner; Traude H Beilharz; Samuel Marguerat; Juan Mata; Stephen Watt; Falk Schubert; Thomas Preiss; Jürg Bähler
A network of multiple regulatory layers shapes gene expression in fission yeast.
Molecular cell 2007;26(1):145-55.
2007: Samuel Marguerat; Brian T Wilhelm; Jürg Bähler
Shaken not stirred: a global research cocktail served in Hinxton.
Genome biology 2007;8(11):320.
2007: Juan Mata; Anna Wilbrey; Jürg Bähler
Transcriptional regulatory network for sexual differentiation in fission yeast.
Genome biology 2007;8(10):R217.
2007: Gabriella Rustici; Harm van Bakel; Daniel H Lackner; Frank C P Holstege; Cisca Wijmenga; Jürg Bähler; Alvis Brazma
Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study.
Genome biology 2007;8(5):R73.
2006: Nimisha Sharma; Samuel Marguerat; Surbhi Mehta; Stephen Watt; Jürg Bähler
The fission yeast Rpb4 subunit of RNA polymerase II plays a specialized role in cell separation.
Molecular genetics and genomics : MGG 2006;276(6):545-54.
2006: Christian Heichinger; Christopher J Penkett; Jürg Bähler; Paul Nurse
Genome-wide characterization of fission yeast DNA replication origins.
The EMBO journal 2006;25(21):5171-9.
2006: Juan Mata; Jürg Bähler
Global roles of Ste11p, cell type, and pheromone in the control of gene expression during early sexual differentiation in fission yeast.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(42):15517-22.
2006: Christopher J Penkett; Zoë E Birtle; Jürg Bähler
Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast.
Yeast (Chichester, England) 2006;23(13):921-8.
2006: Miguel A Rodríguez-Gabriel; Stephen Watt; Jürg Bähler; Miguel Rodriguez-Gabriel
Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast.
Molecular and cellular biology 2006;26(17):6347-56.
2006: Christopher J Penkett; James A Morris; Valerie Wood; Jürg Bähler
YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.
Nucleic acids research 2006;34(Web Server issue):W330-4.
2006: Samuel Marguerat; Thomas Skøt Jensen; Ulrik de Lichtenberg; Brian T Wilhelm; Lars Jensen; Jürg Bähler
The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast.
Yeast (Chichester, England) 2006;23(4):261-77.
2006: François Bachand; Daniel H Lackner; Jürg Bähler; Pamela A Silver
Autoregulation of ribosome biosynthesis by a translational response in fission yeast.
Molecular and cellular biology 2006;26(5):1731-42.
2006: Victoria Martín; Miguel A Rodríguez-Gabriel; W Hayes McDonald; Stephen Watt; John R Yates; Jürg Bähler; Miguel Rodriguez-Gabriel
Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.
Molecular biology of the cell 2006;17(3):1176-83.
2005: Jürg Bähler; Sasa Svetina
A logical circuit for the regulation of fission yeast growth modes.
Journal of theoretical biology 2005;237(2):210-8.
2005: Caroline C L Jenkins; Juan Mata; Richard F Crane; Benjamin Thomas; Alexandre Akoulitchev; Jürg Bähler; Chris J Norbury
Activation of AP-1-dependent transcription by a truncated translation initiation factor.
Eukaryotic cell 2005;4(11):1840-50.
2005: Juan Mata; Samuel Marguerat; Jürg Bähler
Post-transcriptional control of gene expression: a genome-wide perspective.
Trends in biochemical sciences 2005;30(9):506-14.
2005: Karen M Lee; Ida Miklos; Hongyan Du; Stephen Watt; Zsolt Szilagyi; Julia E Saiz; Ram Madabhushi; Christopher J Penkett; Matthias Sipiczki; Jürg Bähler; Robert P Fisher
Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression in fission yeast.
Molecular biology of the cell 2005;16(6):2734-45.
2005: Jeffrey G Mandell; Karen J Goodrich; Jürg Bähler; Thomas R Cech
Expression of a RecQ helicase homolog affects progression through crisis in fission yeast lacking telomerase.
The Journal of biological chemistry 2005;280(7):5249-57.
2005: Clare Harrison; Satoshi Katayama; Susheela Dhut; Dongrong Chen; Nic Jones; Jürg Bähler; Takashi Toda
SCF(Pof1)-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast.
The EMBO journal 2005;24(3):599-610.
2005: Jürg Bähler
Cell-cycle control of gene expression in budding and fission yeast.
Annual review of genetics 2005;39():69-94.
2005: Jeffrey G Mandell; Jürg Bähler; Thomas A Volpe; Robert A Martienssen; Thomas R Cech
Global expression changes resulting from loss of telomeric DNA in fission yeast.
Genome biology 2005;6(1):R1.
2005: Klavs R Hansen; Gavin Burns; Juan Mata; Thomas A Volpe; Robert A Martienssen; Jürg Bähler; Geneviève Thon
Global effects on gene expression in fission yeast by silencing and RNA interference machineries.
Molecular and cellular biology 2005;25(2):590-601.
2005: Jürg Bähler
A transcriptional pathway for cell separation in fission yeast.
Cell cycle (Georgetown, Tex.) 2005;4(1):39-41.
2004: Steven Sanders; Manuela Portoso; Juan Mata; Jürg Bähler; Robin C Allshire; Tony Kouzarides
Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage.
Cell 2004;119(5):603-14.
2004: Laura Gatti; D Chen; Giovanni Luca Beretta; Gabriella Rustici; Nives Carenini; Elisabetta Corna; Donato Colangelo; Franco Zunino; Jürg Bähler; Paola Perego
Global gene expression of fission yeast in response to cisplatin.
Cellular and molecular life sciences : CMLS 2004;61(17):2253-63.
2004: Gabriella Rustici; Juan Mata; Katja Kivinen; Pietro Lió; Christopher J Penkett; Gavin Burns; Jacqueline Hayles; Alvis Brazma; Paul Nurse; Jürg Bähler
Periodic gene expression program of the fission yeast cell cycle.
Nature genetics 2004;36(8):809-17.
2004: Adam Watson; Juan Mata; Jürg Bähler; Anthony Carr; Tim Humphrey
Global gene expression responses of fission yeast to ionizing radiation.
Molecular biology of the cell 2004;15(2):851-60.
2004: Christopher J Penkett; Jürg Bähler
Navigating public microarray databases.
Comparative and functional genomics 2004;5(6-7):471-9.
2003: Miguel A Rodríguez-Gabriel; Gavin Burns; W Hayes McDonald; Victoria Martín; John R Yates; Jürg Bähler; Miguel Rodriguez-Gabriel
RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress.
The EMBO journal 2003;22(23):6256-66.
2003: Rachel Lyne; Gavin Burns; Juan Mata; Christopher J Penkett; Gabriella Rustici; Dongrong Chen; Cordelia Langford; David Vetrie; Jürg Bähler
Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data.
BMC genomics 2003;4(1):27.
2003: Dongrong Chen; W Mark Toone; Juan Mata; Rachel Lyne; Gavin Burns; Katja Kivinen; Alvis Brazma; Nic Jones; Jürg Bähler
Global transcriptional responses of fission yeast to environmental stress.
Molecular biology of the cell 2003;14(1):214-29.
2002: Juan Mata; Rachel Lyne; Gavin Burns; Jürg Bähler
The transcriptional program of meiosis and sporulation in fission yeast.
Nature genetics 2002;32(1):143-7.
2002: Valerie Wood; Jürg Bähler
Website review: how to get the best from fission yeast genome data.
Comparative and functional genomics 2002;3(3):282-8.