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Paul Kersey

Research Profile

Occupations

Concepts & Ideas

Chemicals & Drugs

Genes & Molecular Sequences

Activities & Behaviors

Procedures

Sequence Analysis, DNA

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Brachypodium

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Publications

TOP 3
Rachel Brenchley; Rosalinda D'Amore; Jan Dvorak; Keith J Edwards; Bikram Gill; Yong Gu; Anthony Hall; Naxin Huo; Suzanne Kay; Arnaud Kerhornou; Paul Kersey; Sharyar Kianian; Melissa Kramer; Ming-Cheng Luo; Klaus F X Mayer; W Richard McCombie; Neil McKenzie; Matthias Pfeifer; Sunish Sehgal; Manuel Spannagl; Martin Trick; Darren Waite; Alexandra M Allen; Olin Anderson; Ian Bancroft; Gary L A Barker; Michael W Bevan; Dan Bolser; Neil Hall
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Alex Bateman; Ewan Birney; Elspeth A Bruford; Janusz M Bujnicki; Guy Cochrane; James R Cole; Marcel E Dinger; Anton J Enright; Paul P Gardner; Daniel Gautheret; Sam Griffiths-Jones; Jen Harrow; Javier Herrero; Ian H Holmes; Hsien-Da Huang; Krystyna A Kelly; Paul Kersey; Ana Kozomara; Todd M Lowe; Manja Marz; Simon Moxon; Kim D Pruitt; Tore Samuelsson; Peter F Stadler; Albert J Vilella; Jan-Hinnerk Vogel; Kelly P Williams; Mathew W Wright; Shipra Agrawal; Christian Zwieb
RNAcentral: A vision for an international database of RNA sequences.
Xiangchao Gan; Nicholas P Harberd; Katie L Hildebrand; Géraldine Jean; André Kahles; Eric Kemen; Paul Kersey; Paula X Kover; Rune Lyngsoe; Jonas Behr; Eric J Belfield; Regina Bohnert; Richard M Clark; Paul Derwent; Philipp Drewe; Edward J Osborne; Gunnar Rätsch; Sebastian J Schultheiss; Vipin T Sreedharan; Joshua G Steffen; Oliver Stegle; Christopher Toomajian; Richard Mott
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

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All Publications

2012: Rachel Brenchley; Rosalinda D'Amore; Jan Dvorak; Keith J Edwards; Bikram Gill; Yong Gu; Anthony Hall; Naxin Huo; Suzanne Kay; Arnaud Kerhornou; Paul Kersey; Sharyar Kianian; Melissa Kramer; Ming-Cheng Luo; Klaus F X Mayer; W Richard McCombie; Neil McKenzie; Matthias Pfeifer; Sunish Sehgal; Manuel Spannagl; Martin Trick; Darren Waite; Alexandra M Allen; Olin Anderson; Ian Bancroft; Gary L A Barker; Michael W Bevan; Dan Bolser; Neil Hall
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Nature 2012;491(7426):705-10.
2011: Alex Bateman; Ewan Birney; Elspeth A Bruford; Janusz M Bujnicki; Guy Cochrane; James R Cole; Marcel E Dinger; Anton J Enright; Paul P Gardner; Daniel Gautheret; Sam Griffiths-Jones; Jen Harrow; Javier Herrero; Ian H Holmes; Hsien-Da Huang; Krystyna A Kelly; Paul Kersey; Ana Kozomara; Todd M Lowe; Manja Marz; Simon Moxon; Kim D Pruitt; Tore Samuelsson; Peter F Stadler; Albert J Vilella; Jan-Hinnerk Vogel; Kelly P Williams; Mathew W Wright; Shipra Agrawal; Christian Zwieb
RNAcentral: A vision for an international database of RNA sequences.
RNA (New York, N.Y.) 2011;17(11):1941-6.
2011: Xiangchao Gan; Nicholas P Harberd; Katie L Hildebrand; Géraldine Jean; André Kahles; Eric Kemen; Paul Kersey; Paula X Kover; Rune Lyngsoe; Jonas Behr; Eric J Belfield; Regina Bohnert; Richard M Clark; Paul Derwent; Philipp Drewe; Edward J Osborne; Gunnar Rätsch; Sebastian J Schultheiss; Vipin T Sreedharan; Joshua G Steffen; Oliver Stegle; Christopher Toomajian; Richard Mott
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Nature 2011;477(7365):419-23.
2011: Rhoda J Kinsella; Glenn Proctor; Giulietta M Spudich; Daniel Staines; Jorge Zamora; Syed Haider; Andreas Kähäri; Arnaud Kerhornou; Paul Kersey; Jeff Almeida-King; Paul Derwent; Paul Flicek
Ensembl BioMarts: a hub for data retrieval across taxonomic space.
Database : the journal of biological databases and curation 2011;2011():bar030.
2010: Julian Parkhill; Ewan Birney; Paul Kersey
Genomic information infrastructure after the deluge.
Genome biology 2010;11(7):402.
2010: Paul Kersey; Daniel Lawson; Ewan Birney; P S Derwent; M Haimel; Javier Herrero; S Keenan; Arnaud Kerhornou; G Koscielny; A Kähäri; R J Kinsella; E Kulesha; Uma Maheswari; K Megy; M Nuhn; G Proctor; D Staines; F Valentin; A J Vilella; A Yates
Ensembl Genomes: extending Ensembl across the taxonomic space.
Nucleic acids research 2010;38(Database issue):D563-9.
2008: Paul Kersey; David Lonsdale; Nicky J Mulder; Robert Petryszak; Rolf Apweiler
Building a biological space based on protein sequence similarities and biological ontologies.
Combinatorial chemistry & high throughput screening 2008;11(8):653-60.
2008: Nicola Jane Mulder; Paul Kersey; Manuela Pruess; Rolf Apweiler
In silico characterization of proteins: UniProt, InterPro and Integr8.
Molecular biotechnology 2008;38(2):165-77.
2007: Peter Sterk; Tamara Kulikova; Paul Kersey; Rolf Apweiler
The EMBL Nucleotide Sequence and Genome Reviews Databases.
Methods in molecular biology (Clifton, N.J.) 2007;406():1-21.
2006: Paul Kersey; Rolf Apweiler
Linking publication, gene and protein data.
Nature cell biology 2006;8(11):1183-9.
2006: Manuela Pruess; Paul Kersey; Tamara Kulikova; Rolf Apweiler
Databases and resources for in silico proteome analysis.
Methods of biochemical analysis 2006;49():397-414.
2006: Peter Sterk; Paul Kersey; Rolf Apweiler
Genome Reviews: standardizing content and representation of information about complete genomes.
Omics : a journal of integrative biology 2006;10(2):114-8.
2005: Manuela Pruess; Paul Kersey; Rolf Apweiler
The Integr8 project--a resource for genomic and proteomic data.
In silico biology 2005;5(2):179-85.
2005: Paul Kersey; Lawrence Bower; Lorna Morris; Alan Horne; Robert Petryszak; Carola Kanz; Alexander Kanapin; Ujjwal Das; Karine Michoud; Isabelle Phan; Alexandre Gattiker; Tamara Kulikova; Nadeem Faruque; Karyn Duggan; Peter Mclaren; Britt Reimholz; Laurent Duret; Simon Penel; Ingmar Reuter; Rolf Apweiler
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Nucleic acids research 2005;33(Database issue):D297-302.
2004: Paul Kersey; Jorge Duarte; Allyson Williams; Youla Karavidopoulou; Ewan Birney; Rolf Apweiler
The International Protein Index: an integrated database for proteomics experiments.
Proteomics 2004;4(7):1985-8.
2003: Evelyn Camon; Michele Magrane; Daniel Barrell; David Binns; Wolfgang Fleischmann; Paul Kersey; Nicola Mulder; Tom Oinn; John Maslen; Anthony Cox; Rolf Apweiler
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.
Genome research 2003;13(4):662-72.
2003: Alexandre Gattiker; Karine Michoud; Catherine Rivoire; Andrea H Auchincloss; Elisabeth Coudert; Tania Lima; Paul Kersey; Marco Pagni; Christian J A Sigrist; Corinne Lachaize; Anne-Lise Veuthey; Elisabeth Gasteiger; Amos Bairoch
Automated annotation of microbial proteomes in SWISS-PROT.
Computational biology and chemistry 2003;27(1):49-58.
2003: Sandra Orchard; Paul Kersey; Weimin Zhu; Luisa Montecchi-Palazzi; Henning Hermjakob; Rolf Apweiler
Progress in Establishing Common Standards for Exchanging Proteomics Data: The Second Meeting of the HUPO Proteomics Standards Initiative.
Comparative and functional genomics 2003;4(2):203-6.
2003: Sandra Orchard; Paul Kersey; Henning Hermjakob; Rolf Apweiler
The HUPO Proteomics Standards Initiative Meeting: Towards Common Standards for Exchanging Proteomics Data.
Comparative and functional genomics 2003;4(1):16-9.
2003: Paul Kersey; L Morris; Henning Hermjakob; Rolf Apweiler
Integr8: enhanced inter-operability of European molecular biology databases.
Methods of information in medicine 2003;42(2):154-60.
2003: Manuela Pruess; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.
Nucleic acids research 2003;31(1):414-7.
2002: Margaret Biswas; John F O'Rourke; Evelyn Camon; Gill Fraser; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler
Applications of InterPro in protein annotation and genome analysis.
Briefings in bioinformatics 2002;3(3):285-95.
2002: Alexander Kanapin; Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Tom Oinn; Isabelle Phan; Florence Servant; Evgeny M Zdobnov
Interactive InterPro-based comparisons of proteins in whole genomes.
Bioinformatics (Oxford, England) 2002;18(2):374-5.
2001: Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Evgeny M Zdobnov
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.
Nucleic acids research 2001;29(1):44-8.
2000: Paul Kersey; Henning Hermjakob; Rolf Apweiler
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
Bioinformatics (Oxford, England) 2000;16(11):1048-9.