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Svetlana Khodyreva

Research Profile

Chemicals & Drugs

Physiology

Occupations

Photochemistry

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Publications

TOP 3
Mikhail M Kutuzov; Jean-Christophe Amé; Ekaterina S Ilina; Svetlana N Khodyreva; Valérie Schreiber; Maria Sukhanova; Olga I Lavrik
Interaction of PARP-2 with DNA structures mimicking DNA repair intermediates and consequences on activity of base excision repair proteins.
Alexey A Zeifman; Svetlana N Khodyreva; Olga I Lavrik; Fedor N Novikov; Oleg V Stroganov; Victor S Stroylov; AL Zakharenko; Ghermes G Chilov
Hit clustering can improve virtual fragment screening: CDK2 and PARP1 case studies.
Svetlana N Khodyreva; R Prasad; E S Ilina; Maria Sukhanova; M M Kutuzov; Y Liu; E W Hou; S H Wilson; Olga I Lavrik
Apurinic/apyrimidinic (AP) site recognition by the 5'-dRP/AP lyase in poly(ADP-ribose) polymerase-1 (PARP-1).

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All Publications

2013: Mikhail M Kutuzov; Jean-Christophe Amé; Ekaterina S Ilina; Svetlana N Khodyreva; Valérie Schreiber; Maria Sukhanova; Olga I Lavrik
Interaction of PARP-2 with DNA structures mimicking DNA repair intermediates and consequences on activity of base excision repair proteins.
Biochimie 2013;95(6):1208-15.
2012: Alexey A Zeifman; Svetlana N Khodyreva; Olga I Lavrik; Fedor N Novikov; Oleg V Stroganov; Victor S Stroylov; AL Zakharenko; Ghermes G Chilov
Hit clustering can improve virtual fragment screening: CDK2 and PARP1 case studies.
Journal of molecular modeling 2012;18(6):2553-66.
2010: Svetlana N Khodyreva; R Prasad; E S Ilina; Maria Sukhanova; M M Kutuzov; Y Liu; E W Hou; S H Wilson; Olga I Lavrik
Apurinic/apyrimidinic (AP) site recognition by the 5'-dRP/AP lyase in poly(ADP-ribose) polymerase-1 (PARP-1).
Proceedings of the National Academy of Sciences of the United States of America 2010;107(51):22090-5.
2010: Svetlana N Khodyreva; E S Ilina; M M Kutuzov; Maria Sukhanova; Olga I Lavrik
Poly(ADP-ribose) polymerase 1 interaction with apurinic/apyrimidinic sites.
Doklady. Biochemistry and biophysics 2010;431():69-72.
2009: E S Ilina; Olga I Lavrik; Svetlana N Khodyreva
Identification of Ku80 subunit of Ku antigen as a protein reactive to apurinic/apyrimidinic sites.
Doklady. Biochemistry and biophysics 2009;424():31-4.
2008: Ekaterina S Ilina; Olga I Lavrik; Svetlana N Khodyreva
Ku antigen interacts with abasic sites.
Biochimica et biophysica acta 2008;1784(11):1777-85.
2008: Nadezhda S Dyrkheeva; Svetlana N Khodyreva; Olga I Lavrik
Interaction of APE1 and other repair proteins with DNA duplexes imitating intermediates of DNA repair and replication.
Biochemistry. Biokhimii͡a 2008;73(3):261-72.
2007: Rajendra Prasad; Yuan Liu; Leesa J Deterding; Vladimir P Poltoratsky; Padmini S Kedar; Julie K Horton; Shin-Ichiro Kanno; Kenjiro Asagoshi; Esther W Hou; Svetlana N Khodyreva; Olga I Lavrik; Kenneth B Tomer; Akira Yasui; Samuel H Wilson
HMGB1 is a cofactor in mammalian base excision repair.
Molecular cell 2007;27(5):829-41.
2007: ZhK Nazarkina; Svetlana N Khodyreva; Stéphanie Marsin; J Pablo Radicella; Olga I Lavrik
Study of interaction of XRCC1 with DNA and proteins of base excision repair by photoaffinity labeling technique.
Biochemistry. Biokhimii͡a 2007;72(8):878-86.
2007: Nadezhda S Dyrkheeva; Svetlana N Khodyreva; Olga I Lavrik
[Multifunctional human apurinic/apyrimidinic endonuclease 1: the role of additional functions].
Molekuliarnaia biologiia 2007;41(3):450-66.
2007: Maria Sukhanova; Svetlana N Khodyreva; Olga I Lavrik
Suppression of base excision repair reactions by apoptotic 24kDa-fragment of poly(ADP-ribose) polymerase 1 in bovine testis nuclear extract.
DNA repair 2007;6(5):615-25.
2007: Zhanna K Nazarkina; Svetlana N Khodyreva; Stéphanie Marsin; Olga I Lavrik; J Pablo Radicella
XRCC1 interactions with base excision repair DNA intermediates.
DNA repair 2007;6(2):254-64.
2007: Pavel E Pestryakov; Yu S Krasikova; Irina O Petruseva; Svetlana N Khodyreva; Olga I Lavrik
The role of p14 subunit of replication protein A in binding to single-stranded DNA.
Doklady. Biochemistry and biophysics 2007;412():4-7.
2006: Inga R Grin; Svetlana N Khodyreva; Georgy A Nevinsky; Dmitry O Zharkov
Deoxyribophosphate lyase activity of mammalian endonuclease VIII-like proteins.
FEBS letters 2006;580(20):4916-22.
2006: Maria Sukhanova; Svetlana N Khodyreva; Olga I Lavrik
Influence of poly(ADP-ribose) polymerase-1 and its apoptotic 24-kD fragment on repair of DNA duplexes in bovine testis nuclear extract.
Biochemistry. Biokhimii͡a 2006;71(7):736-48.
2006: Nadezhda S Dyrkheeva; Alexander A Lomzov; Dmitrii V Pyshnyi; Svetlana N Khodyreva; Olga I Lavrik
Efficiency of exonucleolytic action of apurinic/apyrimidinic endonuclease 1 towards matched and mismatched dNMP at the 3' terminus of different oligomeric DNA structures correlates with thermal stability of DNA duplexes.
Biochimica et biophysica acta 2006;1764(4):699-706.
2006: Nadezhda S Dyrkheeva; Svetlana N Khodyreva; Maria Sukhanova; IV Safronov; Sergey V Dezhurov; Olga I Lavrik
3'-5' exonuclease activity of human apurinic/apyrimidinic endonuclease 1 towards DNAs containing dNMP and their modified analogs at the 3 end of single strand DNA break.
Biochemistry. Biokhimii͡a 2006;71(2):200-10.
2005: ZhK Nazarkina; Dmitrii V Pyshnyi; Inna A Pyshnaya; Olga I Lavrik; Svetlana N Khodyreva
Use of modified flap structures for study of base excision repair proteins.
Biochemistry. Biokhimii͡a 2005;70(12):1327-34.
2005: Natalia A Lebedeva; Nadejda I Rechkunova; Sergey V Dezhurov; Svetlana N Khodyreva; Alain Favre; Luis Blanco; Olga I Lavrik
Comparison of functional properties of mammalian DNA polymerase lambda and DNA polymerase beta in reactions of DNA synthesis related to DNA repair.
Biochimica et biophysica acta 2005;1751(2):150-8.
2005: Svetlana N Khodyreva; Olga I Lavrik
Photoaffinity labeling technique for studying DNA replication and DNA repair.
Current medicinal chemistry 2005;12(6):641-55.
2005: Maria Sukhanova; Svetlana N Khodyreva; Natalia A Lebedeva; Rajendra Prasad; Samuel H Wilson; Olga I Lavrik
Human base excision repair enzymes apurinic/apyrimidinic endonuclease1 (APE1), DNA polymerase beta and poly(ADP-ribose) polymerase 1: interplay between strand-displacement DNA synthesis and proofreading exonuclease activity.
Nucleic acids research 2005;33(4):1222-9.
2005: Natalia A Lebedeva; T A Seredina; Vladimir Silnikov; Tatyana Abramova; A S Levina; Svetlana N Khodyreva; Nadejda I Rechkunova; Olga I Lavrik
Analysis of interactions of DNA polymerase beta and reverse transcriptases of human immunodeficiency and mouse leukemia viruses with dNTP analogs containing a modified sugar residue.
Biochemistry. Biokhimii͡a 2005;70(1):1-7.
2005: Sergey V Dezhurov; Svetlana N Khodyreva; Ekaterina S Plekhanova; Olga I Lavrik
A new highly efficient photoreactive analogue of dCTP. Synthesis, characterization, and application in photoaffinity modification of DNA binding proteins.
Bioconjugate chemistry 2005;16(1):215-22.
2004: Maria Sukhanova; Olga I Lavrik; Svetlana N Khodyreva
[Poly(ADP-ribose) polymerase-1 as a regulator of protein-nucleic acid interactions in the processes responding to genotoxic action].
Molekuliarnaia biologiia 2004;38(5):834-47.
2004: Maria Sukhanova; Svetlana N Khodyreva; Olga I Lavrik
Poly(ADP-ribose) polymerase-1 inhibits strand-displacement synthesis of DNA catalyzed by DNA polymerase beta.
Biochemistry. Biokhimii͡a 2004;69(5):558-68.
2003: J K Nazarkina; I O Petrousseva; IV Safronov; Olga I Lavrik; Svetlana N Khodyreva
Interaction of flap endonuclease-1 and replication protein A with photoreactive intermediates of DNA repair.
Biochemistry. Biokhimii͡a 2003;68(8):934-42.
2003: Olga I Lavrik; DIu Khlimankov; Svetlana N Khodyreva
[The eukaryotic replication complex and its affinity modification analysis].
Molekuliarnaia biologiia 2003;37(4):563-72.
2003: Pavel E Pestryakov; Klaus Weisshart; Bernhard Schlott; Svetlana N Khodyreva; Elisabeth Kremmer; Frank Grosse; Olga I Lavrik; Heinz Nasheuer
Human replication protein A. The C-terminal RPA70 and the central RPA32 domains are involved in the interactions with the 3'-end of a primer-template DNA.
The Journal of biological chemistry 2003;278(19):17515-24.
2003: Natalia A Lebedeva; Nadejda I Rechkunova; Sergey V Dezhurov; Svetlana N Khodyreva; Alain Favre; Olga I Lavrik
A new binary system for photosensitized labeling of DNA polymerases in nuclear extract.
Biochemistry. Biokhimii͡a 2003;68(4):476-81.
2003: I O Petrousseva; IV Safronov; N I Komarova; T P Kamynina; Olga I Lavrik; Svetlana N Khodyreva
A new approach to the synthesis of the 5'-end substituted oligonucleotides using T4 polynucleotide kinase and gamma-amides of ATP bearing photoreactive groups.
Doklady. Biochemistry and biophysics 2003;389():114-7.
2003: Natalia A Lebedeva; Svetlana N Khodyreva; Alain Favre; Olga I Lavrik
AP endonuclease 1 has no biologically significant 3(')-->5(')-exonuclease activity.
Biochemical and biophysical research communications 2003;300(1):182-7.
2003: Sergey V Dezhurov; Svetlana N Khodyreva; Nadejda I Rechkunova; Dmitry M Kolpashchikov; Olga I Lavrik
[Comparative study of the efficacy of modifying DNA polymerase and DNA matrix by different photoactive groups at the 3'-end of the DNA primer].
Bioorganicheskaia khimiia 2003;29(1):75-82.
2002: DIu Khlimankov; Nadejda I Rechkunova; Svetlana N Khodyreva; Irina O Petruseva; ZhK Nazarkina; Ekaterina A Belousova; Olga I Lavrik
[Interaction of replication protein A and flap endonuclease 1 with DNA duplexes containing a nick or flap].
Molekuliarnaia biologiia 2002;36(6):1044-53.
2002: Natalia A Lebedeva; Nadejda I Rechkunova; Svetlana N Khodyreva; Alain Favre; Olga I Lavrik
Photoaffinity labeling of proteins in bovine testis nuclear extract.
Biochemical and biophysical research communications 2002;297(4):714-21.
2002: Natalia A Lebedeva; Dmitry M Kolpashchikov; Nadejda I Rechkunova; Svetlana N Khodyreva; Olga I Lavrik
Highly efficient labeling of DNA polymerases by a binary system of photoaffinity reagents.
Biochemistry. Biokhimii͡a 2002;67(7):807-14.
2001: Natalia A Lebedeva; Dmitry M Kolpashchikov; Nadejda I Rechkunova; Svetlana N Khodyreva; Olga I Lavrik
A binary system of photoreagents for high-efficiency labeling of DNA polymerases.
Biochemical and biophysical research communications 2001;287(2):530-5.
2001: AL Zakharenko; Dmitry M Kolpashchikov; Svetlana N Khodyreva; Olga I Lavrik; L Menéndez-Arias
Investigation of the dNTP-binding site of HIV-1 reverse transcriptase using photoreactive analogs of dNTP.
Biochemistry. Biokhimii͡a 2001;66(9):999-1007.
2001: IV Safronov; I A Drachkova; Irina O Petruseva; Svetlana N Khodyreva; MI Dobrikov; TM Ivanova; GV Shishkin; O V Lavrik
[Reagents for modification of protein-nucleic complexes. III. Site-specific photomodification of elongation complex of DNA polymerase beta with arylazide derivatives of primers sensitized with fluorescent ATP gamma-amide].
Bioorganicheskaia khimiia 2001;27(5):372-82.
2001: DIu Khlimankov; Nadejda I Rechkunova; Dmitry M Kolpashchikov; Irina O Petruseva; Svetlana N Khodyreva; A Favr; Olga I Lavrik
[Interaction of human replication protein A with DNA-duplexes, containing gaps of varying sizes].
Molekuliarnaia biologiia 2001;35(5):827-35.
2001: Denis Y Khlimankov; Nadejda I Rechkunova; Dmitry M Kolpashchikov; Svetlana N Khodyreva; Olga I Lavrik
Affinity labeling of flap-endonuclease FEN-1 by photoreactive DNAs.
Biochemistry. Biokhimii͡a 2001;66(7):733-9.
2001: DIu Khlimankov; Irina O Petruseva; Nadejda I Rechkunova; Ekaterina A Belousova; Dmitry M Kolpashchikov; Svetlana N Khodyreva; Olga I Lavrik
[Preparation of photoreactive oligonucleotide duplexes and their application for photoaffinity modification of DNA-binding proteins].
Bioorganicheskaia khimiia 2001;27(3):205-9.
2001: I A Drachkova; Irina O Petruseva; IV Safronov; AL Zakharenko; GV Shishkin; Olga I Lavrik; Svetlana N Khodyreva
[Reagents for modification of protein-nucleic acids complexes. II. Site-specific photomodification of DNA-polymerase beta complexes with primers elongated by the dCTP exo-N-substituted arylazido derivatives].
Bioorganicheskaia khimiia 2001;27(3):197-204.
2001: Dmitry M Kolpashchikov; Svetlana N Khodyreva; Denis Y Khlimankov; MS Wold; Alain Favre; Olga I Lavrik
Polarity of human replication protein A binding to DNA.
Nucleic acids research 2001;29(2):373-9.
2000: Dmitry M Kolpashchikov; Svetlana N Khodyreva; Olga I Lavrik
Replicative protein A exhibits a specific polarity in binding single-stranded DNA.
Doklady biochemistry : proceedings of the Academy of Sciences of the USSR, Biochemistry section / translated from Russian 2000;372(1-6):106-8.
2000: Dmitry M Kolpashchikov; L A Aleksandrova; N F Zakirova; Svetlana N Khodyreva; Olga I Lavrik
[A photoreactive analogue of 2'3'-dideoxyuridine 5'-triphosphate: preparation and use for photoaffinity modification of human replication protein A].
Bioorganicheskaia khimiia 2000;26(2):151-5.
2000: Dmitry M Kolpashchikov; Pavel E Pestryakov; W A Wlassoff; Svetlana N Khodyreva; Olga I Lavrik
Study of interaction of human replication factor A with DNA using new photoreactive analogs of dTTP.
Biochemistry. Biokhimii͡a 2000;65(2):160-3.
1999: Olga I Lavrik; Dmitry M Kolpashchikov; Klaus Weisshart; Heinz Nasheuer; Svetlana N Khodyreva; Alain Favre
RPA subunit arrangement near the 3'-end of the primer is modulated by the length of the template strand and cooperative protein interactions.
Nucleic acids research 1999;27(21):4235-40.
1999: Dmitry M Kolpashchikov; Klaus Weisshart; Heinz Nasheuer; Svetlana N Khodyreva; Ellen Fanning; Alain Favre; Olga I Lavrik
Interaction of the p70 subunit of RPA with a DNA template directs p32 to the 3'-end of nascent DNA.
FEBS letters 1999;450(1-2):131-4.
1999: Dmitry M Kolpashchikov; Nadejda I Rechkunova; MI Dobrikov; Svetlana N Khodyreva; Natalia A Lebedeva; Olga I Lavrik
Sensitized photomodification of mammalian DNA polymerase beta. A new approach for highly selective affinity labeling of polymerases.
FEBS letters 1999;448(1):141-4.
1999: Dmitry M Kolpashchikov; AL Zakharenko; Sergey V Dezhurov; Nadejda I Rechkunova; Svetlana N Khodyreva; S Kh Degtiarev; V V Litvak; Olga I Lavrik
[New reagents for affinity modification of biopolymers. Photoaffinity modification of Tte-DNA polymerase].
Bioorganicheskaia khimiia 1999;25(2):129-36.
1998: Nadejda I Rechkunova; AG Akishev; Natalia A Lebedeva; Svetlana N Khodyreva; SKh Degtyarev; Olga I Lavrik
Thermostable DNA-polymerase from Thermus thermophilus B35: isolation and characterization of some properties.
Biochemistry. Biokhimii͡a 1998;63(11):1266-70.
1998: Sabine Doerhoefer; Svetlana N Khodyreva; IV Safronov; W A Wlassoff; RO Anarbaev; Olga I Lavrik; Eggehard Holler
Molecular constituents of the replication apparatus in the plasmodium of Physarum polycephalum: identification by photoaffinity labelling.
Microbiology (Reading, England) 1998;144 ( Pt 11)():3181-93.
1998: AL Zakharenko; Svetlana N Khodyreva; Nadejda I Rechkunova; IV Safronov; Dmitrii V Pyshnyi; SK Degtyarev; Olga I Lavrik
Photoaffinity labeling of DNA polymerase from Thermus thermophilus and DNA template by photoreactive analogs of dCTP.
Biochemistry. Biokhimii͡a 1998;63(8):929-34.
1997: IV Safronov; N V Shcherbik; Svetlana N Khodyreva; V A Vlasov; MI Dobrikov; GV Shishkin; Olga I Lavrik
[New photoreactive N(4)-substituted dCTP analogues:synthesis, photochemical characteristics, and substrate properties in HIV-1 reverse transcriptase catalyzed DNA synthesis].
Bioorganicheskaia khimiia 1997;23(7):576-85.
1997: N V Shcherbik; Svetlana N Khodyreva; V A Vlasov; MI Dobrikov; G M Dymshits; Olga I Lavrik
[Photoaffinity modification of human immunodeficiency virus reverse transcriptase with an analog of deoxyuridine-5'-triphosphate, containing an arylazide group].
Molekuliarnaia biologiia 1997;31(2):344-52.
1997: Yehuda Goldgur; L Mosyak; L Reshetnikova; V Ankilova; Olga I Lavrik; Svetlana N Khodyreva; Mark Safro
The crystal structure of phenylalanyl-tRNA synthetase from thermus thermophilus complexed with cognate tRNAPhe.
Structure (London, England : 1993) 1997;5(1):59-68.
1993: Svetlana N Khodyreva; V N Podust; D S Sergeev; Eugenia M Ivanova; E I Frolova; Alexei Koshkin; Tatyana S Godovikova; Valentina Zarytova; M Ricchetti; Olga I Lavrik
Comparison of interactions of 5'-derivatives of deoxyoctathymidylate with human DNA polymerize alpha and HIV reverse transcriptase.
Molecular biology reports 1993;18(1):43-7.
1985: Svetlana N Khodyreva; Nina Moor; Valentina N Ankilova; Olga I Lavrik
Phenylalanyl-tRNA synthetase from E. coli MRE-600: analysis of the active site distribution on the enzyme subunits by affinity labelling.
Biochimica et biophysica acta 1985;830(2):206-12.
1984: Svetlana N Khodyreva; E A Sycheva; Valentina N Ankilova; Olga I Lavrik
[Study of the possibility of identifying the structural elements of the phenylalanyl-tRNA-synthetase active center by affinity labeling].
Molekuliarnaia biologiia 1984;18(5):1316-20.
1984: G A Nevinskiĭ; V N Podust; Svetlana N Khodyreva; I I Gorshkova; Olga I Lavrik
[Adenosine- and ethenoadenosine-5'-trimetaphosphates: the effect of covalent bond formation on the state of the affinity label in the complex with phenylalanyl-tRNA-synthetase].
Molekuliarnaia biologiia 1984;18(5):1311-5.
1984: Valentina N Ankilova; Olga I Lavrik; Svetlana N Khodyreva
[Purification and properties of phenylalanyl-tRNA-synthetase from Escherichia coli MRE-600].
Prikladnaia biokhimiia i mikrobiologiia 1984;20(2):208-16.
1983: Svetlana N Khodyreva; G A Nevinskiĭ; Valentina N Ankilova; Olga I Lavrik
[Modification of phenylalanyl-tRNA-synthetase from Escherichia coli MRE600 by adenosine-5'-trimetaphosphate].
Molekuliarnaia biologiia 1983;17(6):1196-203.
1982: Olga I Lavrik; Nina Moor; Svetlana N Khodyreva
Phenylalanyl-tRNA synthetase from E. coli MRE-600: localization of the phenylalanine binding sites on the subunits by affinity reagents.
Molecular biology reports 1982;8(2):123-6.