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Takanori Kigawa

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Genes & Molecular Sequences

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Kazuhiko Yamasaki; Takanori Kigawa; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
DNA-binding domains of plant-specific transcription factors: structure, function, and evolution.
Takayoshi Matsuda; Satoru Watanabe; Takanori Kigawa
Cell-free synthesis system suitable for disulfide-containing proteins.
Keiko Tsuganezawa; Rei Utata; Shigeyuki Yokoyama; Shigenao Taruya; Masaaki Aoki; Morio Endoh; Yoshinobu Hashizume; Teruki Honma; Takuma Kasai; Miki Kato; Takanori Kigawa; Hirotatsu Kojima; Masumi Mori; Tetsuo Nagano; Yukari Nakagawa; Naoko Ogawa; Takayoshi Okabe; Fumio Takahashi; Akiko Tanaka
A fluorescent-based high-throughput screening assay for small molecules that inhibit the interaction of MdmX with p53.

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All Publications

2013: Kazuhiko Yamasaki; Takanori Kigawa; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
DNA-binding domains of plant-specific transcription factors: structure, function, and evolution.
Trends in plant science 2013;18(5):267-76.
2013: Takayoshi Matsuda; Satoru Watanabe; Takanori Kigawa
Cell-free synthesis system suitable for disulfide-containing proteins.
Biochemical and biophysical research communications 2013;431(2):296-301.
2013: Keiko Tsuganezawa; Rei Utata; Shigeyuki Yokoyama; Shigenao Taruya; Masaaki Aoki; Morio Endoh; Yoshinobu Hashizume; Teruki Honma; Takuma Kasai; Miki Kato; Takanori Kigawa; Hirotatsu Kojima; Masumi Mori; Tetsuo Nagano; Yukari Nakagawa; Naoko Ogawa; Takayoshi Okabe; Fumio Takahashi; Akiko Tanaka
A fluorescent-based high-throughput screening assay for small molecules that inhibit the interaction of MdmX with p53.
Journal of biomolecular screening 2013;18(2):191-8.
2012: Takayoshi Matsuda; Kazuhiko Yanai; Jun Yokoyama; Ming-Rong Zhang; Shozo Furumoto; Kae Higuchi; Ren Iwata; Takanori Kigawa
Rapid biochemical synthesis of (11)C-labeled single chain variable fragment antibody for immuno-PET by cell-free protein synthesis.
Bioorganic & medicinal chemistry 2012;20(22):6579-82.
2012: Keiji Numata; Naoya Tochio; Satoru Watanabe; Takanori Kigawa; Yoko Motoda; Yoshiharu Doi
Active intermediates of polyhydroxyalkanoate synthase from Aeromonas caviae in polymerization reaction.
Biomacromolecules 2012;13(11):3450-5.
2012: Fahu He; Takanori Kigawa; Naohiro Kobayashi; Kanako Kuwasako; Mikako Shirouzu; Mari Takahashi; Takaho Terada; Kengo Tsuda; Satoru Watanabe; Shigeyuki Yokoyama; Peter Güntert; Yutaka Muto
Structural insight into the interaction of ADP-ribose with the PARP WWE domains.
FEBS letters 2012;586(21):3858-64.
2012: Akio Kawahara-Kobayashi; Yuhei Araiso; Shun Asami; Naoshi Dohmae; Ryuichiro Ishitani; Takanori Kigawa; Atsushi Kohda; Akiko Masuda; Takayoshi Matsuda; Osamu Nureki; Yoko Sakai; Masahiko Uchiyama; Shigeyuki Yokoyama; Daisuke Kiga
Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic acids research 2012;40(20):10576-84.
2012: Hiroyuki Kogure; Seizo Koshiba; Naoya Tochio; Shigeyuki Yokoyama; Peter Güntert; Mamoru Hagihara; Yusuke Hikawa; Yusuke Inoue; Takanori Kigawa; Nobukazu Nameki
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65.
Proteins 2012;80(11):2629-42.
2012: Kazuhiko Yamasaki; Tomoko Yamasaki; Makoto Inoue; Takanori Kigawa; Motoaki Seki; Kazuo Shinozaki; Satoru Watanabe; Shigeyuki Yokoyama
Structural basis for sequence-specific DNA recognition by an Arabidopsis WRKY transcription factor.
The Journal of biological chemistry 2012;287(10):7683-91.
2012: Fahu He; Makoto Inoue; Takanori Kigawa; Naohiro Kobayashi; Kanako Kuwasako; Mikako Shirouzu; Mari Takahashi; Takaho Terada; Kengo Tsuda; Shigeyuki Yokoyama; Peter Güntert; Yutaka Muto
Solution structure of the splicing factor motif of the human Prp18 protein.
Proteins 2012;80(3):968-74.
2012: Kyoko Hanawa-Suetsugu; Takuhiro Ito; Tomoya Katakai; Takanori Kigawa; Tatsuo Kinashi; Daisuke Kohda; Seizo Koshiba; Mutsuko Kukimoto-Niino; Chiemi Mishima-Tsumagari; Akihiko Nishikimi; Noboru Ohsawa; Shun-ichi Sekine; Mikako Shirouzu; Takaho Terada; Naoya Tochio; Takehito Uruno; Ryogo Akasaka; Yoshinori Fukui; Shigeyuki Yokoyama
Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(9):3305-10.
2012: Satoru Akama; Masayuki Yamamura; Takanori Kigawa
A multiphysics model of in vitro transcription coupling enzymatic reaction and precipitation formation.
Biophysical journal 2012;102(2):221-30.
2011: Makoto Nagano; Mikako Shirouzu; Takuya Shuo; Naoya Tochio; Tadashi Tomizawa; Satoru Watanabe; Shigeyuki Yokoyama; Toshifumi Akizawa; Noriko Handa; Takushi Harada; Fumiaki Hayashi; Daisuke Hoshino; Takanori Kigawa; Seizo Koshiba; Naohiko Koshikawa; Motoharu Seiki
ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain.
The Journal of biological chemistry 2011;286(36):31598-609.
2011: Takashi Yaeno; Satoru Watanabe; Angela Chaparro-Garcia; Sophien Kamoun; Takanori Kigawa; Seizo Koshiba; Hua Li; Sebastian Schornack; Ken Shirasu
Phosphatidylinositol monophosphate-binding interface in the oomycete RXLR effector AVR3a is required for its stability in host cells to modulate plant immunity.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(35):14682-7.
2011: Mitsuo Kuratani; Akeo Shinkai; Takaho Terada; Ryogo Akasaka; Yoshitaka Bessho; Kyoko Higashijima; Takuma Kasai; Takanori Kigawa; Shigeyuki Yokoyama
Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP.
Proteins 2011;79(7):2065-75.
2011: Joon Shin; Naoya Tochio; Nagakumar Bharatham; Goutam Chakraborty; Congbao Kang; Takanori Kigawa; Kyong-Tai Kim; Wanil Kim; Seizo Koshiba; Ho Sup Yoon
NMR solution structure of human vaccinia-related kinase 1 (VRK1) reveals the C-terminal tail essential for its structural stability and autocatalytic activity.
The Journal of biological chemistry 2011;286(25):22131-8.
2011: Jun Yokoyama; Takayoshi Matsuda; Seizo Koshiba; Naoya Tochio; Takanori Kigawa
A practical method for cell-free protein synthesis to avoid stable isotope scrambling and dilution.
Analytical biochemistry 2011;411(2):223-9.
2011: Kengo Tsuda; Tatsuhiko Someya; Kanako Kuwasako; Mari Takahashi; Fahu He; Satoru Unzai; Makoto Inoue; Takushi Harada; Satoru Watanabe; Takaho Terada; Naohiro Kobayashi; Mikako Shirouzu; Takanori Kigawa; Akiko Tanaka; Sumio Sugano; Peter Güntert; Shigeyuki Yokoyama; Yutaka Muto
Structural basis for the dual RNA-recognition modes of human Tra2-β RRM.
Nucleic acids research 2011;39(4):1538-53.
2011: Seisuke Yamashita; Takashi Nagata; Masahito Kawazoe; Chie Takemoto; Takanori Kigawa; Peter Güntert; Naohiro Kobayashi; Takaho Terada; Mikako Shirouzu; Motoaki Wakiyama; Yutaka Muto; Shigeyuki Yokoyama
Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein.
Protein science : a publication of the Protein Society 2011;20(1):118-30.
2010: Jun Yokoyama; Takayoshi Matsuda; Seizo Koshiba; Takanori Kigawa
An economical method for producing stable-isotope labeled proteins by the E. coli cell-free system.
Journal of biomolecular NMR 2010;48(4):193-201.
2010: Alexander K Goroncy; Kazutaka Murayama; Mikako Shirouzu; Seiki Kuramitsu; Takanori Kigawa; Shigeyuki Yokoyama
NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes.
Journal of structural and functional genomics 2010;11(4):247-56.
2010: Fahu He; Takashi Umehara; Kohei Saito; Takushi Harada; Satoru Watanabe; Takashi Yabuki; Takanori Kigawa; Mari Takahashi; Kanako Kuwasako; Kengo Tsuda; Takayoshi Matsuda; Masaaki Aoki; Eiko Seki; Naohiro Kobayashi; Peter Güntert; Shigeyuki Yokoyama; Yutaka Muto
Structural insight into the zinc finger CW domain as a histone modification reader.
Structure (London, England : 1993) 2010;18(9):1127-39.
2010: Naoya Tochio; Takashi Umehara; Yoshiko Munemasa; Toru Suzuki; Shin Sato; Kengo Tsuda; Seizo Koshiba; Takanori Kigawa; Ryozo Nagai; Shigeyuki Yokoyama
Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain.
Journal of molecular biology 2010;401(1):97-114.
2010: Koichiro Kodama; Hiroshi Nakayama; Kensaku Sakamoto; Seketsu Fukuzawa; Takanori Kigawa; Takashi Yabuki; Makoto Kitabatake; Koji Takio; Shigeyuki Yokoyama
Site-specific incorporation of 4-iodo-L-phenylalanine through opal suppression.
Journal of biochemistry 2010;148(2):179-87.
2010: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Makoto Inoue; Akiko Tanaka; Sumio Sugano; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein.
Proteins 2010;78(9):2176-80.
2010: Seizo Koshiba; Hua Li; Yoko Motoda; Tadashi Tomizawa; Takuma Kasai; Naoya Tochio; Takashi Yabuki; Takushi Harada; Satoru Watanabe; Akiko Tanaka; Mikako Shirouzu; Takanori Kigawa; Tadashi Yamamoto; Shigeyuki Yokoyama
Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2.
Journal of structural and functional genomics 2010;11(2):125-41.
2010: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Makoto Inoue; Makato Inoue; Satoru Watanabe; Takushi Harada; Akiko Tanaka; Osamu Ohara; Takanori Kigawa; Shigeyuki Yokoyama
The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
Journal of structural and functional genomics 2010;11(2):181-8.
2010: Akihiko Arakawa; Noriko Handa; Noboru Ohsawa; Meiri Shida; Takanori Kigawa; Fumiaki Hayashi; Mikako Shirouzu; Shigeyuki Yokoyama
The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange.
Structure (London, England : 1993) 2010;18(3):309-19.
2010: Takanori Kigawa
Cell-free protein production system with the E. coli crude extract for determination of protein folds.
Methods in molecular biology (Clifton, N.J.) 2010;607():101-11.
2010: Takanori Kigawa
Analysis of protein functions through a bacterial cell-free protein expression system.
Methods in molecular biology (Clifton, N.J.) 2010;607():53-62.
2010: Takanori Kigawa
Cell-free protein preparation through prokaryotic transcription-translation methods.
Methods in molecular biology (Clifton, N.J.) 2010;607():1-10.
2009: Masaaki Aoki; Takayoshi Matsuda; Yasuko Tomo; Yukako Miyata; Makoto Inoue; Takanori Kigawa; Shigeyuki Yokoyama
Automated system for high-throughput protein production using the dialysis cell-free method.
Protein expression and purification 2009;68(2):128-36.
2009: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Manami Sato; Makato Inoue; Satoru Watanabe; Yoshihide Hayashizaki; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
NMR solution structures of actin depolymerizing factor homology domains.
Protein science : a publication of the Protein Society 2009;18(11):2384-92.
2009: Fahu He; Kohei Saito; Naohiro Kobayashi; Takushi Harada; Satoru Watanabe; Takanori Kigawa; Peter Güntert; Osamu Ohara; Akiko Tanaka; Satoru Unzai; Yutaka Muto; Shigeyuki Yokoyama
Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway.
Journal of molecular biology 2009;393(2):478-95.
2009: Hongfei Wang; Chie Takemoto; Ryogo Akasaka; Tomomi Uchikubo-Kamo; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Sumio Sugano; Akiko Tanaka; Makoto Inoue; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator.
Journal of structural biology 2009;166(1):32-7.
2008: Yi-Jan Lin; Takashi Umehara; Makoto Inoue; Kohei Saito; Takanori Kigawa; Moon-Kyoo Jang; Keiko Ozato; Shigeyuki Yokoyama; Balasundaram Padmanabhan; Peter Güntert
Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4.
Protein science : a publication of the Protein Society 2008;17(12):2174-9.
2008: Kanako Kuwasako; Mari Takahashi; Naoya Tochio; Chikage Abe; Kengo Tsuda; Makoto Inoue; Takaho Terada; Mikako Shirouzu; Naohiro Kobayashi; Takanori Kigawa; Seiichi Taguchi; Akiko Tanaka; Yoshihide Hayashizaki; Peter Güntert; Yutaka Muto; Shigeyuki Yokoyama
Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode.
Biochemistry 2008;47(24):6437-50.
2008: Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Satoru Watanabe; Masaru Tateno; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains.
Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2008;46(3):394-401.
2008: Ryo Kitahara; Chenhua Zhao; Kohei Saito; Seizo Koshiba; Makoto Ioune; Takanori Kigawa; Shigeyuki Yokoyama; Kazuyuki Akasaka
Basic folded and low-populated locally disordered conformers of SUMO-2 characterized by NMR spectroscopy at varying pressures.
Biochemistry 2008;47(1):30-9.
2007: Takashi Yabuki; Yoko Motoda; Kazuharu Hanada; Emi Nunokawa; Miyuki Saito; Eiko Seki; Makoto Inoue; Takanori Kigawa; Shigeyuki Yokoyama
A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis.
Journal of structural and functional genomics 2007;8(4):173-91.
2007: Naohiro Kobayashi; Junji Iwahara; Seizo Koshiba; Tadashi Tomizawa; Naoya Tochio; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.
Journal of biomolecular NMR 2007;39(1):31-52.
2007: Fahu He; Takashi Umehara; Kengo Tsuda; Makoto Inoue; Takanori Kigawa; Takayoshi Matsuda; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Sumio Sugano; Yutaka Muto; Shigeyuki Yokoyama
Solution structure of the zinc finger HIT domain in protein FON.
Protein science : a publication of the Protein Society 2007;16(8):1577-87.
2007: Yukiko Doi-Katayama; Fumiaki Hayashi; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Takanori Kigawa; Mayumi Yoshida; Mikako Shirouzu; Takaho Terada; Yoshihide Hayashizaki; Shigeyuki Yokoyama; Hiroshi Hirota
Solution structure of the general transcription factor 2I domain in mouse TFII-I protein.
Protein science : a publication of the Protein Society 2007;16(8):1788-92.
2007: Yoshihiro Nakamura; Takashi Umehara; Hiroaki Hamana; Yoshihide Hayashizaki; Makoto Inoue; Takanori Kigawa; Mikako Shirouzu; Takaho Terada; Akiko Tanaka; Balasundaram Padmanabhan; Shigeyuki Yokoyama
Crystal structure analysis of the PHD domain of the transcription co-activator Pygopus.
Journal of molecular biology 2007;370(1):80-92.
2007: Misao Yoneyama; Naoya Tochio; Takashi Umehara; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Satoru Watanabe; Yasuko Tomo; Yuji Nishimura; Takushi Harada; Takaho Terada; Mikako Shirouzu; Yoshihide Hayashizaki; Osamu Ohara; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
Structural and functional differences of SWIRM domain subtypes.
Journal of molecular biology 2007;369(1):222-38.
2007: Takayoshi Matsuda; Seizo Koshiba; Naoya Tochio; Eiko Seki; Noriyuki Iwasaki; Takashi Yabuki; Makoto Inoue; Shigeyuki Yokoyama; Takanori Kigawa
Improving cell-free protein synthesis for stable-isotope labeling.
Journal of biomolecular NMR 2007;37(3):225-9.
2007: Satoshi Ohnishi; Peter Güntert; Seizo Koshiba; Tadashi Tomizawa; Ryogo Akasaka; Naoya Tochio; Manami Sato; Makoto Inoue; Takushi Harada; Satoru Watanabe; Akiko Tanaka; Mikako Shirouzu; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form.
FEBS letters 2007;581(3):462-8.
2007: Koichiro Kodama; Seketsu Fukuzawa; Hiroshi Nakayama; Kensaku Sakamoto; Takanori Kigawa; Takashi Yabuki; Natsuko Matsuda; Mikako Shirouzu; Koji Takio; Shigeyuki Yokoyama; Kazuo Tachibana
Site-specific functionalization of proteins by organopalladium reactions.
Chembiochem : a European journal of chemical biology 2007;8(2):232-8.
2006: Noriko Handa; Mutsuko Kukimoto-Niino; Ryogo Akasaka; Kazutaka Murayama; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Akiko Tanaka; Yoshihide Hayashizaki; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of the UNC5H2 death domain.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 12):1502-9.
2006: Naoya Tochio; Seizo Koshiba; Naohiro Kobayashi; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Yoko Motoda; Atsuo Kobayashi; Akiko Tanaka; Yoshihide Hayashizaki; Takaho Terada; Mikako Shirouzu; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.
Protein science : a publication of the Protein Society 2006;15(11):2534-43.
2006: Mutsuko Kukimoto-Niino; Tetsuo Takagi; Ryogo Akasaka; Kazutaka Murayama; Tomomi Uchikubo-Kamo; Takaho Terada; Makoto Inoue; Satoru Watanabe; Akiko Tanaka; Yoshihide Hayashizaki; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the RUN domain of the RAP2-interacting protein x.
The Journal of biological chemistry 2006;281(42):31843-53.
2006: Noriko Handa; Mutsuko Kukimoto-Niino; Ryogo Akasaka; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Makoto Inoue; Takanori Kigawa; Shingo Kose; Naoko Imamoto; Akiko Tanaka; Yoshihide Hayashizaki; Mikako Shirouzu; Shigeyuki Yokoyama
The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain.
Journal of molecular biology 2006;363(1):114-24.
2006: Koichiro Kodama; Seketsu Fukuzawa; Kensaku Sakamoto; Hiroshi Nakayama; Takanori Kigawa; Takashi Yabuki; Natsuko Matsuda; Mikako Shirouzu; Koji Takio; Kazuo Tachibana; Shigeyuki Yokoyama
A new protein engineering approach combining chemistry and biology, part I; site-specific incorporation of 4-iodo-L-phenylalanine in vitro by using misacylated suppressor tRNAPhe.
Chembiochem : a European journal of chemical biology 2006;7(10):1577-81.
2006: Takayoshi Matsuda; Takanori Kigawa; Seizo Koshiba; Makoto Inoue; Masaaki Aoki; Kazuhiko Yamasaki; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Cell-free synthesis of zinc-binding proteins.
Journal of structural and functional genomics 2006;7(2):93-100.
2006: Toshiyuki Hamada; Yoko Ito; Takamasa Abe; Fumiaki Hayashi; Peter Güntert; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Akiko Tanaka; Sumio Sugano; Shigeyuki Yokoyama; Hiroshi Hirota
Solution structure of the antifreeze-like domain of human sialic acid synthase.
Protein science : a publication of the Protein Society 2006;15(5):1010-6.
2006: Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure.
FEBS letters 2006;580(8):2109-16.
2006: Namthip Chumpolkulwong; Kensaku Sakamoto; Akiko Hayashi; Fumie Iraha; Naoko Shinya; Natsuko Matsuda; Daisuke Kiga; Akiko Urushibata; Mikako Shirouzu; Kenji Oki; Takanori Kigawa; Shigeyuki Yokoyama
Translation of 'rare' codons in a cell-free protein synthesis system from Escherichia coli.
Journal of structural and functional genomics 2006;7(1):31-6.
2006: Naoya Tochio; Takashi Umehara; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Satoru Watanabe; Yasuko Tomo; Masaru Hanada; Masaomi Ikari; Miyuki Sato; Takaho Terada; Takahiro Nagase; Osamu Ohara; Mikako Shirouzu; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the SWIRM domain of human histone demethylase LSD1.
Structure (London, England : 1993) 2006;14(3):457-68.
2006: Koichiro Kodama; Seketsu Fukuzawa; Hiroshi Nakayama; Takanori Kigawa; Kensaku Sakamoto; Takashi Yabuki; Natsuko Matsuda; Mikako Shirouzu; Koji Takio; Kazuo Tachibana; Shigeyuki Yokoyama
Regioselective carbon-carbon bond formation in proteins with palladium catalysis; new protein chemistry by organometallic chemistry.
Chembiochem : a European journal of chemical biology 2006;7(1):134-9.
2005: Hua Li; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Yoko Motoda; Atsuo Kobayashi; Takaho Terada; Mikako Shirouzu; Seizo Koshiba; Yi-Jan Lin; Peter Güntert; Harukazu Suzuki; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.
Journal of biomolecular NMR 2005;32(4):329-34.
2005: Ryoichi Arai; Mutsuko Kukimoto-Niino; Hiroko Uda-Tochio; Satoshi Morita; Tomomi Uchikubo-Kamo; Ryogo Akasaka; Yuuka Etou; Yoshihide Hayashizaki; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution.
Protein science : a publication of the Protein Society 2005;14(7):1888-93.
2005: Goshi Ishihara; Mie Goto; Mihoro Saeki; Kaori Ito; Tetsuya Hori; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Expression of G protein coupled receptors in a cell-free translational system using detergents and thioredoxin-fusion vectors.
Protein expression and purification 2005;41(1):27-37.
2005: Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.
Journal of molecular biology 2005;348(2):253-64.
2005: Anna Scott; David Pantoja-Uceda; Seizo Koshiba; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Sumio Sugano; Shigeyuki Yokoyama; Peter Güntert
Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes.
Journal of biomolecular NMR 2005;31(4):357-61.
2005: Kazuki Kurimoto; Yutaka Muto; Naomi Obayashi; Takaho Terada; Mikako Shirouzu; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Takanori Kigawa; Hiromi Okumura; Akiko Tanaka; Norito Shibata; Maki Kashikawa; Kiyokazu Agata; Shigeyuki Yokoyama
Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein.
Journal of structural biology 2005;150(1):58-68.
2005: Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Masaru Tateno; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Nobuhiro Hayami; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Solution structure of an Arabidopsis WRKY DNA binding domain.
The Plant cell 2005;17(3):944-56.
2005: Nobukazu Nameki; Naoya Tochio; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yukiko Fujikura; Miyuki Saito; Masaomi Ikari; Megumi Watanabe; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Akiko Tanaka; Yoshihide Hayashizaki; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Protein science : a publication of the Protein Society 2005;14(3):756-64.
2005: John F Hall; Mark J Ellis; Takanori Kigawa; Takashi Yabuki; Takayoshi Matsuda; Eiko Seki; S Samar Hasnain; Shigeyuki Yokoyama
Towards the high-throughput expression of metalloproteins from the Mycobacterium tuberculosis genome.
Journal of synchrotron radiation 2005;12(Pt 1):4-7.
2005: David Pantoja-Uceda; Blanca López-Méndez; Seizo Koshiba; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama; Peter Güntert
Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana.
Protein science : a publication of the Protein Society 2005;14(1):224-30.
2004: Anna Scott; David Pantoja-Uceda; Seizo Koshiba; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Sumio Sugano; Shigeyuki Yokoyama; Peter Güntert
NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES.
Journal of biomolecular NMR 2004;30(4):463-4.
2004: Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Masaru Tateno; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Nobuhiro Hayami; Takaho Terada; Mikako Shirouzu; Takashi Osanai; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1.
The Plant cell 2004;16(12):3448-59.
2004: Kohei Saito; Takanori Kigawa; Seizo Koshiba; Kazuo Sato; Yo Matsuo; Ayako Sakamoto; Tetsuo Takagi; Mikako Shirouzu; Takashi Yabuki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Masaaki Aoki; Yukako Miyata; Noriko Hirakawa; Makoto Inoue; Takaho Terada; Takahiro Nagase; Reiko Kikuno; Manabu Nakayama; Osamu Ohara; Akiko Tanaka; Shigeyuki Yokoyama
The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma.
Structure (London, England : 1993) 2004;12(9):1719-28.
2004: Nobukazu Nameki; Misao Yoneyama; Seizo Koshiba; Naoya Tochio; Makoto Inoue; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takushi Harada; Kohei Saito; Naohiro Kobayashi; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Natsuko Matsuda; Noriko Sakagami; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Takashi Osanai; Akiko Tanaka; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kengo Kinoshita; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the RWD domain of the mouse GCN2 protein.
Protein science : a publication of the Protein Society 2004;13(8):2089-100.
2004: David Pantoja-Uceda; Blanca López-Méndez; Seizo Koshiba; Takanori Kigawa; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Hiroshi Hirota; Mayumi Yoshida; Akiko Tanaka; Takashi Osanai; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama; Peter Güntert
NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana.
Journal of biomolecular NMR 2004;29(2):207-8.
2004: Blanca López-Méndez; David Pantoja-Uceda; Tadashi Tomizawa; Seizo Koshiba; Takanori Kigawa; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Hiroshi Hirota; Mayumi Yoshida; Akiko Tanaka; Takashi Osanai; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama; Peter Güntert
NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana.
Journal of biomolecular NMR 2004;29(2):205-6.
2004: Takeshi Maeda; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Yoko Motoda; Atsuo Kobayashi; Fumiko Hiroyasu; Mikako Shirouzu; Takaho Terada; Nobuhiro Hayami; Yoshiko Ishizuka; Naoko Shinya; Ayako Tatsuguchi; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16).
The Journal of biological chemistry 2004;279(13):13174-82.
2004: Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Masaru Tateno; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Yoshiko Ishizuka; Takaho Terada; Mikako Shirouzu; Takashi Osanai; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
Journal of molecular biology 2004;337(1):49-63.
2004: Namthip Chumpolkulwong; Chie Hori-Takemoto; Takeshi Hosaka; Takashi Inaoka; Takanori Kigawa; Mikako Shirouzu; Kozo Ochi; Shigeyuki Yokoyama
Effects of Escherichia coli ribosomal protein S12 mutations on cell-free protein synthesis.
European journal of biochemistry / FEBS 2004;271(6):1127-34.
2004: Takuma Kasai; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Natsuko Matsuda; Yasuko Tomo; Mikako Shirouzu; Takaho Terada; Naomi Obayashi; Hiroaki Hamana; Naoko Shinya; Ayako Tatsuguchi; Satoko Yasuda; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Harukazu Suzuki; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of a BolA-like protein from Mus musculus.
Protein science : a publication of the Protein Society 2004;13(2):545-8.
2004: Takanori Kigawa; Takashi Yabuki; Natsuko Matsuda; Takayoshi Matsuda; Rie Nakajima; Akiko Tanaka; Shigeyuki Yokoyama
Preparation of Escherichia coli cell extract for highly productive cell-free protein expression.
Journal of structural and functional genomics 2004;5(1-2):63-8.
2003: Takashi Wada; Mikako Shirouzu; Takaho Terada; Yoshiko Ishizuka; Takayoshi Matsuda; Takanori Kigawa; Seiki Kuramitsu; Sam-Yong Park; Jeremy R H Tame; Shigeyuki Yokoyama
Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 7):1213-8.
2002: Satoshi Akanuma; Takanori Kigawa; Shigeyuki Yokoyama
Combinatorial mutagenesis to restrict amino acid usage in an enzyme to a reduced set.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(21):13549-53.
2002: Kay Fukushima; Jun Kikuchi; Seizo Koshiba; Takanori Kigawa; Yutaka Kuroda; Shigeyuki Yokoyama
Solution structure of the DFF-C domain of DFF45/ICAD. A structural basis for the regulation of apoptotic DNA fragmentation.
Journal of molecular biology 2002;321(2):317-27.
2002: Daisuke Kiga; Kensaku Sakamoto; Koichiro Kodama; Takanori Kigawa; Takayoshi Matsuda; Takashi Yabuki; Mikako Shirouzu; Yoko Harada; Hiroshi Nakayama; Koji Takio; Yoshinori Hasegawa; Yaeta Endo; Ichiro Hirao; Shigeyuki Yokoyama
An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(15):9715-20.
2002: Hideki Hatanaka; Seizo Koshiba; Jun Kikuchi; Takanori Kigawa; Shigeyuki Yokoyama
[High-throughput NMR structure determination: The present and the future].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2002;47(8 Suppl):1038-44.
2002: Jun Kikuchi; Junji Iwahara; Takanori Kigawa; Yota Murakami; Tsuneko Okazaki; Shigeyuki Yokoyama
Solution structure determination of the two DNA-binding domains in the Schizosaccharomyces pombe Abp1 protein by a combination of dipolar coupling and diffusion anisotropy restraints.
Journal of biomolecular NMR 2002;22(4):333-47.
2002: Ichiro Hirao; Takashi Ohtsuki; Tsuyoshi Fujiwara; Tsuneo Mitsui; Tomoko Yokogawa; Taeko Okuni; Hiroshi Nakayama; Koji Takio; Takashi Yabuki; Takanori Kigawa; Koichiro Kodama; Takashi Yokogawa; Kazuya Nishikawa; Shigeyuki Yokoyama
An unnatural base pair for incorporating amino acid analogs into proteins.
Nature biotechnology 2002;20(2):177-82.
2002: Takanori Kigawa; Emi Yamaguchi-Nunokawa; Koichiro Kodama; Takayoshi Matsuda; Takashi Yabuki; Natsuko Matsuda; Ryuichiro Ishitani; Osamu Nureki; Shigeyuki Yokoyama
Selenomethionine incorporation into a protein by cell-free synthesis.
Journal of structural and functional genomics 2002;2(1):29-35.
2002: Seizo Koshiba; Takanori Kigawa; Akira Kikuchi; Shigeyuki Yokoyama
Solution structure of the epsin N-terminal homology (ENTH) domain of human epsin.
Journal of structural and functional genomics 2002;2(1):1-8.
2001: Takashi Itoh; Seizo Koshiba; Takanori Kigawa; Akira Kikuchi; Shigeyuki Yokoyama; Tadaomi Takenawa
Role of the ENTH domain in phosphatidylinositol-4,5-bisphosphate binding and endocytosis.
Science (New York, N.Y.) 2001;291(5506):1047-51.
2001: Takaho Terada; Mikako Shirouzu; Y Fukumori; F Fujimori; Y Ito; Takanori Kigawa; Shigeyuki Yokoyama; T Uchida
Solution structure of the human parvulin-like peptidyl prolyl cis/trans isomerase, hPar14.
Journal of molecular biology 2001;305(4):917-26.
2000: Shigeyuki Yokoyama; H Hirota; Takanori Kigawa; Takashi Yabuki; M Shirouzu; Takaho Terada; Y Ito; Y Matsuo; Y Kuroda; Y Nishimura; Y Kyogoku; K Miki; R Masui; S Kuramitsu
Structural genomics projects in Japan.
Nature structural biology 2000;7 Suppl():943-5.
1999: Takanori Kigawa; Takashi Yabuki; S Yokoyama
[Large-scale protein preparation using the cell-free synthesis].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1999;44(4 Suppl):598-605.
1999: T Terada; Y Ito; Mikako Shirouzu; M Tateno; K Hashimoto; Takanori Kigawa; T Ebisuzaki; K Takio; T Shibata; Shigeyuki Yokoyama; BO Smith; Ernest D Laue; J A Cooper
Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.
Journal of molecular biology 1999;286(1):219-32.
1999: Seizo Koshiba; Takanori Kigawa; Junji Iwahara; A Kikuchi; Shigeyuki Yokoyama
Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1).
FEBS letters 1999;442(2-3):138-42.
1999: Takanori Kigawa; Takashi Yabuki; Y Yoshida; M Tsutsui; Y Ito; T Shibata; Shigeyuki Yokoyama
Cell-free production and stable-isotope labeling of milligram quantities of proteins.
FEBS letters 1999;442(1):15-9.
1998: Takanori Kigawa; Makoto Endo; Y Ito; Mikako Shirouzu; A Kikuchi; Shigeyuki Yokoyama
Solution structure of the Ras-binding domain of RGL.
FEBS letters 1998;441(3):413-8.
1998: Takashi Yabuki; Takanori Kigawa; N Dohmae; K Takio; T Terada; Y Ito; Ernest D Laue; J A Cooper; M Kainosho; S Yokoyama
Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis.
Journal of biomolecular NMR 1998;11(3):295-306.
1998: Junji Iwahara; Takanori Kigawa; Katsumi Kitagawa; H Masumoto; T Okazaki; Shigeyuki Yokoyama
A helix-turn-helix structure unit in human centromere protein B (CENP-B).
The EMBO journal 1998;17(3):827-37.
1997: M Inoue; Yutaka Muto; H Sakamoto; Takanori Kigawa; K Takio; Yoshiro Shimura; Shigeyuki Yokoyama
A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.
Journal of molecular biology 1997;272(1):82-94.
1997: Seizo Koshiba; Takanori Kigawa; J H Kim; Mikako Shirouzu; D Bowtell; Shigeyuki Yokoyama
The solution structure of the pleckstrin homology domain of mouse Son-of-sevenless 1 (mSos1).
Journal of molecular biology 1997;269(4):579-91.
1995: Takanori Kigawa; Yutaka Muto; Shigeyuki Yokoyama
Cell-free synthesis and amino acid-selective stable isotope labeling of proteins for NMR analysis.
Journal of biomolecular NMR 1995;6(2):129-34.
1995: Osamu Nureki; D G Vassylyev; K Katayanagi; T Shimizu; S Sekine; Takanori Kigawa; Takayuki Miyazawa; Shigeyuki Yokoyama; K Morikawa
Architectures of class-defining and specific domains of glutamyl-tRNA synthetase.
Science (New York, N.Y.) 1995;267(5206):1958-65.
1994: H Koide; Shigeyuki Yokoyama; Y Katayama; Yutaka Muto; Takanori Kigawa; T Kohno; H Takusari; M Oishi; S Takahashi; K Tsukumo
Receptor-binding affinities of human epidermal growth factor variants having unnatural amino acid residues in position 23.
Biochemistry 1994;33(23):7470-6.
1991: Takanori Kigawa; Shigeyuki Yokoyama
A continuous cell-free protein synthesis system for coupled transcription-translation.
Journal of biochemistry 1991;110(2):166-8.