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Jeffrey Bailey

Research Profile

Physiology

Genes & Molecular Sequences

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Evolution, Molecular

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Publications

TOP 3
Can Alkan; Eray Tüzün; Jerome Buard; Franck Lethiec; Evan E Eichler; Jeffrey A Bailey; S Cenk Sahinalp
Manipulating multiple sequence alignments via MaM and WebMaM.
andrew sharp; Devin P Locke; Sean D McGrath; Ze Cheng; Jeffrey A Bailey; Rhea Vallente; Lisa M Pertz; Royden A Clark; Stuart Schwartz; Richard Segraves; Vanessa V Oseroff; Donna G Albertson; Daniel Pinkel; Evan E Eichler
Segmental duplications and copy-number variation in the human genome.
Eray Tuzun; andrew sharp; Jeffrey A Bailey; Rajinder Kaul; V Anne Morrison; Lisa M Pertz; Eric Haugen; Hillary S Hayden; Donna G Albertson; Daniel Pinkel; Maynard V Olson; Evan E Eichler
Fine-scale structural variation of the human genome.

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All Publications

2005: Can Alkan; Eray Tüzün; Jerome Buard; Franck Lethiec; Evan E Eichler; Jeffrey A Bailey; S Cenk Sahinalp
Manipulating multiple sequence alignments via MaM and WebMaM.
Nucleic acids research 2005;33(Web Server issue):W295-8.
2005: andrew sharp; Devin P Locke; Sean D McGrath; Ze Cheng; Jeffrey A Bailey; Rhea Vallente; Lisa M Pertz; Royden A Clark; Stuart Schwartz; Richard Segraves; Vanessa V Oseroff; Donna G Albertson; Daniel Pinkel; Evan E Eichler
Segmental duplications and copy-number variation in the human genome.
American journal of human genetics 2005;77(1):78-88.
2005: Eray Tuzun; andrew sharp; Jeffrey A Bailey; Rajinder Kaul; V Anne Morrison; Lisa M Pertz; Eric Haugen; Hillary S Hayden; Donna G Albertson; Daniel Pinkel; Maynard V Olson; Evan E Eichler
Fine-scale structural variation of the human genome.
Nature genetics 2005;37(7):727-32.
2004: Xinwei She; Julie E Horvath; Zhaoshi Jiang; Ge Liu; Terrence S Furey; Laurie A Christ; Royden Clark; Tina Graves; Cassy L Gulden; Can Alkan; Jeffrey A Bailey; Cenk Sahinalp; Mariano Rocchi; David Haussler; Richard K Wilson; Webb Miller; Stuart Schwartz; Evan E Eichler
The structure and evolution of centromeric transition regions within the human genome.
Nature 2004;430(7002):857-64.
2004: Jeffrey A Bailey; Deanna M Church; ventura Mario; Mariano Rocchi; Evan E Eichler
Analysis of segmental duplications and genome assembly in the mouse.
Genome research 2004;14(5):789-801.
2004: Eray Tuzun; Jeffrey A Bailey; Evan E Eichler
Recent segmental duplications in the working draft assembly of the brown Norway rat.
Genome research 2004;14(4):493-506.
2004: Can Alkan; Evan E Eichler; Jeffrey A Bailey; S Cenk Sahinalp; Eray Tüzün
The role of unequal crossover in alpha-satellite DNA evolution: a computational analysis.
Journal of computational biology : a journal of computational molecular cell biology 2004;11(5):933-44.
2004: Jeffrey A Bailey; Robert Baertsch; W James Kent; David Haussler; Evan E Eichler
Hotspots of mammalian chromosomal evolution.
Genome biology 2004;5(4):R23.
2003: Jeffrey A Bailey; Ge Liu; Evan E Eichler
An Alu transposition model for the origin and expansion of human segmental duplications.
American journal of human genetics 2003;73(4):823-34.
2003: Julie E Horvath; Cassy L Gulden; Jeffrey A Bailey; Chris T Yohn; John D McPherson; A Prescott; B A Roe; Pieter J de Jong; ventura Mario; Doriana Misceo; Nicoletta Archidiacono; Shaying Zhao; Stuart Schwartz; Mariano Rocchi; Evan E Eichler
Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications.
Molecular biology and evolution 2003;20(9):1463-79.
2003: Ge Liu; Shaying Zhao; Jeffrey A Bailey; S Cenk Sahinalp; Can Alkan; Eray Tuzun; Eric Green; Evan E Eichler
Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.
Genome research 2003;13(3):358-68.
2003: Jane Guy; Tom Hearn; Moira Crosier; Jonathan M Mudge; Luigi Viggiano; Dirk Koczan; Hans-Jurgen Thiesen; Jeffrey A Bailey; Julie E Horvath; Evan E Eichler; Mark E Earthrowl; Panos Deloukas; Lisa French; Jane Rogers; David Bentley; Michael S Jackson
Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p.
Genome research 2003;13(2):159-72.
2003: Jeffrey A Bailey; Evan E Eichler
Genome-wide detection and analysis of recent segmental duplications within mammalian organisms.
Cold Spring Harbor symposia on quantitative biology 2003;68():115-24.
2002: Jeffrey A Bailey; Zhiping Gu; Royden A Clark; Knut Reinert; Rhea Vallente; Stuart Schwartz; Mark D Adams; Eugene W Myers; Peter W Li; Evan E Eichler
Recent segmental duplications in the human genome.
Science (New York, N.Y.) 2002;297(5583):1003-7.
2002: Can Alkan; Jeffrey A Bailey; Evan E Eichler; S Cenk Sahinalp; Eray Tuzun
An algorithmic analysis of the role of unequal crossover in alpha-satellite DNA evolution.
Genome informatics. International Conference on Genome Informatics 2002;13():93-102.
2002: Jeffrey A Bailey; Amy M Yavor; Luigi Viggiano; Doriana Misceo; Julie E Horvath; Nicoletta Archidiacono; Stuart Schwartz; Mariano Rocchi; Evan E Eichler
Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.
American journal of human genetics 2002;70(1):83-100.
2001: Matthew E Johnson; Luigi Viggiano; Jeffrey A Bailey; M Abdul-Rauf; G Goodwin; Mariano Rocchi; Evan E Eichler
Positive selection of a gene family during the emergence of humans and African apes.
Nature 2001;413(6855):514-9.
2001: Julie E Horvath; Jeffrey A Bailey; Devin P Locke; Evan E Eichler
Lessons from the human genome: transitions between euchromatin and heterochromatin.
Human molecular genetics 2001;10(20):2215-23.
2001: Jeffrey A Bailey; Amy M Yavor; Hillary F Massa; Barbara J Trask; Evan E Eichler
Segmental duplications: organization and impact within the current human genome project assembly.
Genome research 2001;11(6):1005-17.
2000: Audrey Lynn; Carl S Kashuk; M B Petersen; Jeffrey A Bailey; D R Cox; Stylianos Antonarakis; Aravinda Chakravarti
Patterns of meiotic recombination on the long arm of human chromosome 21.
Genome research 2000;10(9):1319-32.
2000: Jeffrey A Bailey; Laura Carrel; Aravinda Chakravarti; Evan E Eichler
Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(12):6634-9.