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Amos Bairoch

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Pascale Gaudet; Anne Gleizes; Mario Pereira; Monique Zahn-Zabal; Catherine Zwahlen; Ghislaine Argoud-Puy; Amos Bairoch; Isabelle Cusin; Paula Duek; Olivier Evalet; Alain Gateau; Lydie Lane
neXtProt: organizing protein knowledge in the context of human proteome projects.
Young-Ki Paik; Ghasem Hosseini Salekdeh; Mathias Uhlen; Tadashi Yamamoto; Jong Shin Yoo; Ruedi Aebersold; Alexander Archakov; Amos Bairoch; Mark S Baker; John Bergeron; Pierre-Alain Binz; Jerome Garin; Samir Hanash; Fuchu He; Seul-Ki Jeong; Paul Keown; Hyoung-Joo Lee; Pierre Legrain; György Marko-Varga; Keun Na; Toshihide Nishimura; Gilbert S Omenn; William S Hancock
Standard guidelines for the chromosome-centric human proteome project.
Young-Ki Paik; Michael Snyder; Allen D Taylor; Mathias Uhlen; Fangfei Yan; Fan Zhang; Yue Zhang; Ruedi Aebersold; Amos Bairoch; Rui Chen; Yong Cheng; Sang Yun Cho; Eun-Young Choi; Eric W Deutsch; Samir Hanash; Denis Hochstrasser; Seul-Ki Jeong; Hoguen Kim; Kwang Youl Kim; Ja-Young Kwon; Eun-Young Lee; Hyoung-Joo Lee; Pierre Legrain; György Marko-Varga; Keun Na; Gilbert S Omenn; William S Hancock
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.

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All Publications

2013: Pascale Gaudet; Anne Gleizes; Mario Pereira; Monique Zahn-Zabal; Catherine Zwahlen; Ghislaine Argoud-Puy; Amos Bairoch; Isabelle Cusin; Paula Duek; Olivier Evalet; Alain Gateau; Lydie Lane
neXtProt: organizing protein knowledge in the context of human proteome projects.
Journal of proteome research 2013;12(1):293-8.
2012: Young-Ki Paik; Ghasem Hosseini Salekdeh; Mathias Uhlen; Tadashi Yamamoto; Jong Shin Yoo; Ruedi Aebersold; Alexander Archakov; Amos Bairoch; Mark S Baker; John Bergeron; Pierre-Alain Binz; Jerome Garin; Samir Hanash; Fuchu He; Seul-Ki Jeong; Paul Keown; Hyoung-Joo Lee; Pierre Legrain; György Marko-Varga; Keun Na; Toshihide Nishimura; Gilbert S Omenn; William S Hancock
Standard guidelines for the chromosome-centric human proteome project.
Journal of proteome research 2012;11(4):2005-13.
2012: Young-Ki Paik; Michael Snyder; Allen D Taylor; Mathias Uhlen; Fangfei Yan; Fan Zhang; Yue Zhang; Ruedi Aebersold; Amos Bairoch; Rui Chen; Yong Cheng; Sang Yun Cho; Eun-Young Choi; Eric W Deutsch; Samir Hanash; Denis Hochstrasser; Seul-Ki Jeong; Hoguen Kim; Kwang Youl Kim; Ja-Young Kwon; Eun-Young Lee; Hyoung-Joo Lee; Pierre Legrain; György Marko-Varga; Keun Na; Gilbert S Omenn; William S Hancock
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.
Nature biotechnology 2012;30(3):221-3.
2012: Camille Mary; Lisa Salleron; Petra Tienz; Amos Bairoch; Dirk Bumann; Paula Duek; Lydie Lane
Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway.
PloS one 2012;7(12):e52877.
2012: Anne Morgat; Ioannis Xenarios; Kristian B Axelsen; Amos Bairoch; Lydie Bougueleret; Alan Bridge; Eric Coissac; Elisabeth Coudert; Guillaume Keller; Alain Viari
UniPathway: a resource for the exploration and annotation of metabolic pathways.
Nucleic acids research 2012;40(Database issue):D761-9.
2011: Pierre Legrain; György Marko-Varga; Ruedi Aebersold; Alexander Archakov; Amos Bairoch; Kumar Bala; Laura Beretta; John Bergeron; Christoph H Borchers; Garry L Corthals; Catherine E Costello; Eric W Deutsch; Bruno Domon; William Hancock; Fuchu He; Denis Hochstrasser; Young-Ki Paik; Ghasem Hosseini Salekdeh; Salvatore Sechi; Michael Snyder; Sudhir Srivastava; Mathias Uhlén; Cathy H Wu; Tadashi Yamamoto; Gilbert S Omenn
The human proteome project: current state and future direction.
Molecular & cellular proteomics : MCP 2011;10(7):M111.009993.
2011: Chantal Hulo; Edouard de Castro; Patrick Masson; Lydie Bougueleret; Amos Bairoch; Ioannis Xenarios; Philippe Le Mercier
ViralZone: a knowledge resource to understand virus diversity.
Nucleic acids research 2011;39(Database issue):D576-82.
2010: Rolf Apweiler; Richard Armstrong; Amos Bairoch; Athel Cornish-Bowden; Peter J Halling; Jan-Hendrik S Hofmeyr; Carsten Kettner; Thomas S Leyh; Johann Rohwer; Dietmar Schomburg; Christoph Steinbeck; Keith Tipton
A large-scale protein-function database.
Nature chemical biology 2010;6(11):785.
2010: Tommy Nilsson; Matthias Mann; Ruedi Aebersold; John R Yates; Amos Bairoch; John J M Bergeron
Mass spectrometry in high-throughput proteomics: ready for the big time.
Nature methods 2010;7(9):681-5.
2010: Florence Jungo; Amos Bairoch; Lydie Bougueleret; Anne Estreicher; Ioannis Xenarios
Animal Toxins: How is Complexity Represented in Databases?
Toxins 2010;2(2):262-82.
2010: Robin Liechti; Anne Gleizes; Dmitry Kuznetsov; Lydie Bougueleret; Philippe Le Mercier; Amos Bairoch; Ioannis Xenarios
OpenFluDB, a database for human and animal influenza virus.
Database : the journal of biological databases and curation 2010;2010():baq004.
2010: Christian J A Sigrist; Lorenzo Cerutti; Edouard De Castro; Petra S Langendijk-Genevaux; Virginie Bulliard; Amos Bairoch; Nicolas Hulo
PROSITE, a protein domain database for functional characterization and annotation.
Nucleic acids research 2010;38(Database issue):D161-6.
2009: William Black; Dimitrios Stagos; Satori A Marchitti; Daniel W Nebert; Keith F Tipton; Amos Bairoch; Vasilis Vasiliou
Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature.
Pharmacogenetics and genomics 2009;19(11):893-902.
2009: Michel Schneider; Lydie Lane; Emmanuel Boutet; Damien Lieberherr; Michael Tognolli; Lydie Bougueleret; Amos Bairoch
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program.
Journal of proteomics 2009;72(3):567-73.
2009: Sandra Orchard; Christine Hoogland; Amos Bairoch; Martin Eisenacher; Hans-Joachim Kraus; Pierre-Alain Binz
Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands.
Proteomics 2009;9(3):499-501.
2009: Eric Jain; Amos Bairoch; Severine Duvaud; Isabelle Phan; Nicole Redaschi; Baris E Suzek; Maria J Martin; Peter McGarvey; Elisabeth Gasteiger
Infrastructure for the life sciences: design and implementation of the UniProt website.
BMC bioinformatics 2009;10():136.
2008: Yum Yip; Maria Famiglietti; A Gos; Paula D Duek; Fabrice P A David; Alain Gateau; Amos Bairoch
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase.
Human mutation 2008;29(3):361-6.
2008: Amos Bairoch; Sarah Cohen-Boulakia; Christine Froidevaux
Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008.
BMC bioinformatics 2008;9 Suppl 8():S1.
2008: Barend Mons; Michael Ashburner; Christine Chichester; Erik van Mulligen; Marc Weeber; Johan T den Dunnen; Gert-Jan van Ommen; Mark Musen; Matthew Cockerill; Henning Hermjakob; Albert Mons; Abel L Packer; Roberto Pacheco; Suzanna Lewis; Alfred Berkeley; William Melton; Nickolas Barris; Jimmy Wales; Gerard Meijssen; Erik Moeller; Peter Jan Roes; Katy Börner; Amos Bairoch
Calling on a million minds for community annotation in WikiProteins.
Genome biology 2008;9(5):R89.
2008: Nicolas Hulo; Amos Bairoch; Virginie Bulliard; Lorenzo Cerutti; Béatrice A Cuche; Edouard De Castro; Corinne Lachaize; Petra S Langendijk-Genevaux; Christian J A Sigrist
The 20 years of PROSITE.
Nucleic acids research 2008;36(Database issue):D245-9.
2007: Emmanuel Boutet; Damien Lieberherr; Michael Tognolli; Michel Schneider; Amos Bairoch
UniProtKB/Swiss-Prot.
Methods in molecular biology (Clifton, N.J.) 2007;406():89-112.
2007: Nicola J Mulder; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard Copley; Emmanuel Courcelle; Ujjwal Das; Louise Daugherty; Mark Dibley; Robert Finn; Wolfgang Fleischmann; Julian Gough; Daniel Haft; Nicolas Hulo; Sarah Hunter; Daniel Kahn; Alexander Kanapin; Anish Kejariwal; Alberto Labarga; Petra S Langendijk-Genevaux; David Lonsdale; Rodrigo Lopez; Ivica Letunic; Martin Madera; John Maslen; Craig McAnulla; Jennifer McDowall; Jaina Mistry; Alex Mitchell; Anastasia N Nikolskaya; Sandra Orchard; Christine Orengo; Robert Petryszak; Jeremy D Selengut; Christian J A Sigrist; Paul D Thomas; Franck Valentin; Derek Wilson; Cathy H Wu; Corin Yeats
New developments in the InterPro database.
Nucleic acids research 2007;35(Database issue):D224-8.
2006: Edouard De Castro; Christian J A Sigrist; Alexandre Gattiker; Virginie Bulliard; Petra S Langendijk-Genevaux; Elisabeth Gasteiger; Amos Bairoch; Nicolas Hulo
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.
Nucleic acids research 2006;34(Web Server issue):W362-5.
2006: Nicolas Hulo; Amos Bairoch; Virginie Bulliard; Lorenzo Cerutti; Edouard De Castro; Petra S Langendijk-Genevaux; Marco Pagni; Christian J A Sigrist
The PROSITE database.
Nucleic acids research 2006;34(Database issue):D227-30.
2006: Cathy H Wu; Rolf Apweiler; Amos Bairoch; Darren A Natale; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Raja Mazumder; Claire O'Donovan; Nicole Redaschi; Baris E Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic acids research 2006;34(Database issue):D187-91.
2005: Christian J A Sigrist; Edouard De Castro; Petra S Langendijk-Genevaux; Virginie Le Saux; Amos Bairoch; Nicolas Hulo
ProRule: a new database containing functional and structural information on PROSITE profiles.
Bioinformatics (Oxford, England) 2005;21(21):4060-6.
2005: Brigitte Boeckmann; Marie-Claude Blatter; Livia Famiglietti; Ursula Hinz; Lydie Lane; Bernd Roechert; Amos Bairoch
Protein variety and functional diversity: Swiss-Prot annotation in its biological context.
Comptes rendus biologies 2005;328(10-11):882-99.
2005: Michel Schneider; Amos Bairoch; Cathy H Wu; Rolf Apweiler
Plant protein annotation in the UniProt Knowledgebase.
Plant physiology 2005;138(1):59-66.
2005: Florence Jungo; Amos Bairoch
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase.
Toxicon : official journal of the International Society on Toxinology 2005;45(3):293-301.
2005: Nicola J Mulder; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard Copley; Emmanuel Courcelle; Ujjwal Das; Richard Durbin; Wolfgang Fleischmann; Julian Gough; Daniel Haft; Nicola Harte; Nicolas Hulo; Daniel Kahn; Alexander Kanapin; Maria Krestyaninova; David Lonsdale; Rodrigo Lopez; Ivica Letunic; Martin Madera; John Maslen; Jennifer McDowall; Alex Mitchell; Anastasia N Nikolskaya; Sandra Orchard; Marco Pagni; Chris P Ponting; Emmanuel Quevillon; Jeremy Selengut; Christian J A Sigrist; Ville Silventoinen; David J Studholme; Robert Vaughan; Cathy H Wu
InterPro, progress and status in 2005.
Nucleic acids research 2005;33(Database issue):D201-5.
2005: Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
The Universal Protein Resource (UniProt).
Nucleic acids research 2005;33(Database issue):D154-9.
2004: Michel Schneider; Michael Tognolli; Amos Bairoch
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools.
Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2004;42(12):1013-21.
2004: Kazuyuki Nakamura; Ruedi Aebersold; Amos Bairoch; Michael Dunn; Julio Celis; Samir Hanash; Denis Hochstrasser; Ian Humphrey-Smith; Peter James; Joachim Klose; Joshua LaBaer; Hanno Langen; Matthias Mann; Raj Parekh; Scott Patterson; Christopher Pearce; Peter Poepstorff; Richard J Simpson; Ian Tomlinson; Akira Tsugita; John Yates
[From genome to proteome--aim of human proteomics].
Seikagaku. The Journal of Japanese Biochemical Society 2004;76(10):1271-4.
2004: Keith Rose; Lydie Bougueleret; Thierry Baussant; Günter Böhm; Paolo Botti; Jacques Colinge; Isabelle Cusin; Hubert Gaertner; Anne Gleizes; Manfred Heller; Silvia Jimenez; Andrew Johnson; Martin Kussmann; Laure Menin; Christoph Menzel; Frederic Ranno; Patricia Rodriguez-Tomé; John Rogers; Cedric Saudrais; Matteo Villain; Diana Wetmore; Amos Bairoch; Denis Hochstrasser
Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins.
Proteomics 2004;4(7):2125-50.
2004: Nathalie Farriol-Mathis; John S Garavelli; Brigitte Boeckmann; Séverine Duvaud; Elisabeth Gasteiger; Alain Gateau; Anne-Lise Veuthey; Amos Bairoch
Annotation of post-translational modifications in the Swiss-Prot knowledge base.
Proteomics 2004;4(6):1537-50.
2004: Ron D Appel; Amos Bairoch
Post-translational modifications: a challenge for proteomics and bioinformatics.
Proteomics 2004;4(6):1525-6.
2004: Yum Yip; Holger Scheib; Alexander V Diemand; Alexandre Gattiker; Livia M Famiglietti; Elisabeth Gasteiger; Amos Bairoch
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants.
Human mutation 2004;23(5):464-70.
2004: Amos Bairoch; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger
Swiss-Prot: juggling between evolution and stability.
Briefings in bioinformatics 2004;5(1):39-55.
2004: Rolf Apweiler; Amos Bairoch; Cathy H Wu
Protein sequence databases.
Current opinion in chemical biology 2004;8(1):76-80.
2004: Henning Hermjakob; Luisa Montecchi-Palazzi; Chris Lewington; Sugath Mudali; Samuel Kerrien; Sandra Orchard; Martin Vingron; Bernd Roechert; Peter Roepstorff; Alfonso Valencia; Hanah Margalit; John Armstrong; Amos Bairoch; Gianni Cesareni; David Sherman; Rolf Apweiler
IntAct: an open source molecular interaction database.
Nucleic acids research 2004;32(Database issue):D452-5.
2004: Astrid Fleischmann; Michael Darsow; Kirill Degtyarenko; Wolfgang Fleischmann; Sinéad Boyce; Kristian B Axelsen; Amos Bairoch; Dietmar Schomburg; Keith F Tipton; Rolf Apweiler
IntEnz, the integrated relational enzyme database.
Nucleic acids research 2004;32(Database issue):D434-7.
2004: Nicolas Hulo; Christian J A Sigrist; Virginie Le Saux; Petra S Langendijk-Genevaux; Lorenza Bordoli; Alexandre Gattiker; Edouard De Castro; Philipp Bucher; Amos Bairoch
Recent improvements to the PROSITE database.
Nucleic acids research 2004;32(Database issue):D134-7.
2004: Rolf Apweiler; Amos Bairoch; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
UniProt: the Universal Protein knowledgebase.
Nucleic acids research 2004;32(Database issue):D115-9.
2003: Isabelle Phan; S F Pilbout; Wolfgang Fleischmann; Amos Bairoch
NEWT, a new taxonomy portal.
Nucleic acids research 2003;31(13):3822-3.
2003: Elisabeth Gasteiger; Alexandre Gattiker; Christine Hoogland; Ivan Ivanyi; Ron D Appel; Amos Bairoch
ExPASy: The proteomics server for in-depth protein knowledge and analysis.
Nucleic acids research 2003;31(13):3784-8.
2003: Hilde Peeters; Philippe Debeer; Amos Bairoch; Valérie Wilquet; Christel Huysmans; E Parthoens; Jean-Pierre Fryns; Marc Gewillig; Y Nakamura; N Niikawa; Wim Van de Ven; koenraad devriendt
PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse.
Human genetics 2003;112(5-6):573-80.
2003: Alexandre Gattiker; Karine Michoud; Catherine Rivoire; Andrea H Auchincloss; Elisabeth Coudert; Tania Lima; Paul Kersey; Marco Pagni; Christian J A Sigrist; Corinne Lachaize; Anne-Lise Veuthey; Elisabeth Gasteiger; Amos Bairoch
Automated annotation of microbial proteomes in SWISS-PROT.
Computational biology and chemistry 2003;27(1):49-58.
2003: Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic acids research 2003;31(1):365-70.
2003: Nicola J Mulder; Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Phillip Bucher; Richard R Copley; Emmanuel Courcelle; Ujjwal Das; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Sam Griffiths-Jones; Daniel Haft; Nicola Harte; Nicolas Hulo; Daniel Kahn; Alexander Kanapin; Maria Krestyaninova; Rodrigo Lopez; Ivica Letunic; David Lonsdale; Ville Silventoinen; Sandra Orchard; Marco Pagni; David Peyruc; Chris P Ponting; Jeremy D Selengut; Florence Servant; Christian J A Sigrist; Robert Vaughan; Evgueni M Zdobnov
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic acids research 2003;31(1):315-8.
2002: Alexandre Gattiker; Willy V Bienvenut; Amos Bairoch; Elisabeth Gasteiger
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification.
Proteomics 2002;2(10):1435-44.
2002: Ron D Appel; Amos Bairoch
The application of bioinformatics to mass spectrometry.
Proteomics 2002;2(10):1363-4.
2002: Claire O'Donovan; Maria J Martin; Alexandre Gattiker; Elisabeth Gasteiger; Amos Bairoch; Rolf Apweiler
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
Briefings in bioinformatics 2002;3(3):275-84.
2002: Christian J A Sigrist; Lorenzo Cerutti; Nicolas Hulo; Alexandre Gattiker; Laurent Falquet; Marco Pagni; Amos Bairoch; Philipp Bucher
PROSITE: a documented database using patterns and profiles as motif descriptors.
Briefings in bioinformatics 2002;3(3):265-74.
2002: Nicola J Mulder; Rolf Apweiler; Terri K Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Phillip Bucher; Richard Copley; Emmanuel Courcelle; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jerome Gouzy; Sam Griffith-Jones; Daniel Haft; Henning Hermjakob; Nicolas Hulo; Daniel Kahn; Alexander Kanapin; Maria Krestyaninova; Rodrigo Lopez; Ivica Letunic; Sandra Orchard; Marco Pagni; David Peyruc; Chris P Ponting; Florence Servant; Christian J A Sigrist
InterPro: an integrated documentation resource for protein families, domains and functional sites.
Briefings in bioinformatics 2002;3(3):225-35.
2002: Flavio Monigatti; Elisabeth Gasteiger; Amos Bairoch; Eva Jung
The Sulfinator: predicting tyrosine sulfation sites in protein sequences.
Bioinformatics (Oxford, England) 2002;18(5):769-70.
2002: Alexandre Gattiker; Elisabeth Gasteiger; Amos Bairoch
ScanProsite: a reference implementation of a PROSITE scanning tool.
Applied bioinformatics 2002;1(2):107-8.
2002: Laurent Falquet; Marco Pagni; Philipp Bucher; Nicolas Hulo; Christian J A Sigrist; Kay Hofmann; Amos Bairoch
The PROSITE database, its status in 2002.
Nucleic acids research 2002;30(1):235-8.
2001: Elisabeth Gasteiger; Eva Jung; Amos Bairoch
SWISS-PROT: connecting biomolecular knowledge via a protein database.
Current issues in molecular biology 2001;3(3):47-55.
2001: Claire O'Donovan; Rolf Apweiler; Amos Bairoch
The human proteomics initiative (HPI).
Trends in biotechnology 2001;19(5):178-81.
2001: Eva Jung; Anne-Lise Veuthey; Elisabeth Gasteiger; Amos Bairoch
Annotation of glycoproteins in the SWISS-PROT database.
Proteomics 2001;1(2):262-8.
2001: Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; F Corpet; Michael D R Croning; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jérôme Gouzy; Henning Hermjakob; Nicolas Hulo; Inge Jonassen; Daniel Kahn; Alexander Kanapin; Youla Karavidopoulou; Rodrigo Lopez; B Marx; Nicola Mulder; Tom Oinn; Marco Pagni; Florence Servant; Christian J A Sigrist; Evgeny M Zdobnov
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic acids research 2001;29(1):37-40.
2000: Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; F Corpet; Michael D R Croning; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jérôme Gouzy; Henning Hermjakob; Nicolas Hulo; Inge Jonassen; Daniel Kahn; Alexander Kanapin; Youla Karavidopoulou; Rodrigo Lopez; B Marx; Nicola Mulder; Tom Oinn; Marco Pagni; Florence Servant; Christian J A Sigrist; Evgeny M Zdobnov
InterPro--an integrated documentation resource for protein families, domains and functional sites.
Bioinformatics (Oxford, England) 2000;16(12):1145-50.
2000: P Linder; Elisabeth Gasteiger; Amos Bairoch
A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae.
Yeast (Chichester, England) 2000;16(6):507-9.
2000: Amos Bairoch
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!
Bioinformatics (Oxford, England) 2000;16(1):48-64.
2000: Amos Bairoch
The ENZYME database in 2000.
Nucleic acids research 2000;28(1):304-5.
2000: Christine Hoogland; jean-charles sanchez; L Tonella; Pierre-Alain Binz; Amos Bairoch; Denis F Hochstrasser; Ron D Appel
The 1999 SWISS-2DPAGE database update.
Nucleic acids research 2000;28(1):286-8.
2000: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic acids research 2000;28(1):45-8.
1999: VL Junker; Rolf Apweiler; Amos Bairoch
Representation of functional information in the SWISS-PROT data bank.
Bioinformatics (Oxford, England) 1999;15(12):1066-7.
1999: Robin Gras; Markus Müller; Elisabeth Gasteiger; S Gay; Pierre-Alain Binz; Willy V Bienvenut; Christine Hoogland; jean-charles sanchez; Amos Bairoch; Denis F Hochstrasser; Ron D Appel
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection.
Electrophoresis 1999;20(18):3535-50.
1999: H Chen; Colette Rossier; Michael Morris; Hamish Scott; A Gos; Amos Bairoch; Stylianos E Antonarakis
A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y.
Human genetics 1999;105(5):399-409.
1999: Pierre-Alain Binz; Markus Müller; Daniel Walther; Willy V Bienvenut; Robin Gras; Christine Hoogland; G Bouchet; Elisabeth Gasteiger; R Fabbretti; S Gay; Patricia M Palagi; Marc R Wilkins; V Rouge; L Tonella; Salvo Paesano; G Rossellat; A Karmime; Amos Bairoch; jean-charles sanchez; Ron D Appel; Denis F Hochstrasser
A molecular scanner to automate proteomic research and to display proteome images.
Analytical chemistry 1999;71(21):4981-8.
1999: Vasilis Vasiliou; Amos Bairoch; K F Tipton; Daniel W Nebert
Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping.
Pharmacogenetics 1999;9(4):421-34.
1999: Marc R Wilkins; Elisabeth Gasteiger; Andrew A Gooley; B R Herbert; MP Molloy; Pierre-Alain Binz; K Ou; jean-charles sanchez; Amos Bairoch; keith williams; Denis F Hochstrasser
High-throughput mass spectrometric discovery of protein post-translational modifications.
Journal of molecular biology 1999;289(3):645-57.
1999: Marc R Wilkins; Elisabeth Gasteiger; Amos Bairoch; jean-charles sanchez; keith williams; Ron D Appel; Denis F Hochstrasser
Protein identification and analysis tools in the ExPASy server.
Methods in molecular biology (Clifton, N.J.) 1999;112():531-52.
1999: Ron D Appel; Christine Hoogland; Amos Bairoch; Denis F Hochstrasser
Constructing a 2-D database for the World Wide Web.
Methods in molecular biology (Clifton, N.J.) 1999;112():411-6.
1999: Ron D Appel; Amos Bairoch; Denis F Hochstrasser
2-D databases on the World Wide Web.
Methods in molecular biology (Clifton, N.J.) 1999;112():383-91.
1999: Amos Bairoch
The ENZYME data bank in 1999.
Nucleic acids research 1999;27(1):310-1.
1999: Christine Hoogland; jean-charles sanchez; L Tonella; Amos Bairoch; Denis F Hochstrasser; Ron D Appel
The SWISS-2DPAGE database: what has changed during the last year.
Nucleic acids research 1999;27(1):289-91.
1999: Kay Hofmann; Philipp Bucher; Laurent Falquet; Amos Bairoch
The PROSITE database, its status in 1999.
Nucleic acids research 1999;27(1):215-9.
1999: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
Nucleic acids research 1999;27(1):49-54.
1998: Marc R Wilkins; Elisabeth Gasteiger; Colin Wheeler; I Lindskog; jean-charles sanchez; Amos Bairoch; Ron D Appel; M J Dunn; Denis F Hochstrasser
Multiple parameter cross-species protein identification using MultiIdent--a world-wide web accessible tool.
Electrophoresis 1998;19(18):3199-206.
1998: Michael Galperin; Amos Bairoch; Eugene V Koonin
A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases.
Protein science : a publication of the Protein Society 1998;7(8):1829-35.
1998: L Tonella; Bradley J Walsh; jean-charles sanchez; K Ou; Marc R Wilkins; M Tyler; S Frutiger; Andrew A Gooley; I Pescaru; Ron D Appel; JX Yan; Amos Bairoch; Christine Hoogland; F S Morch; GJ Hughes; keith williams; Denis F Hochstrasser
'98 Escherichia coli SWISS-2DPAGE database update.
Electrophoresis 1998;19(11):1960-71.
1998: Marc R Wilkins; Elisabeth Gasteiger; jean-charles sanchez; Amos Bairoch; Denis F Hochstrasser
Two-dimensional gel electrophoresis for proteome projects: the effects of protein hydrophobicity and copy number.
Electrophoresis 1998;19(8-9):1501-5.
1998: T Doerks; Amos Bairoch; P Bork
Protein annotation: detective work for function prediction.
Trends in genetics : TIG 1998;14(6):248-50.
1998: Marc R Wilkins; Elisabeth Gasteiger; L Tonella; K Ou; M Tyler; jean-charles sanchez; Andrew A Gooley; Bradley J Walsh; Amos Bairoch; Ron D Appel; keith williams; Denis F Hochstrasser
Protein identification with N and C-terminal sequence tags in proteome projects.
Journal of molecular biology 1998;278(3):599-608.
1998: Kenneth E Rudd; Ian Humphery-Smith; Valerie Wasinger; Amos Bairoch
Low molecular weight proteins: a challenge for post-genomic research.
Electrophoresis 1998;19(4):536-44.
1998: L Duret; Nicolas Guex; Manuel Peitsch; Amos Bairoch
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling.
Genome research 1998;8(4):348-53.
1998: Christine Hoogland; jean-charles sanchez; L Tonella; Amos Bairoch; Denis F Hochstrasser; Ron D Appel
Current status of the SWISS-2DPAGE database.
Nucleic acids research 1998;26(1):332-3.
1998: Florence Horn; J Weare; Margot W Beukers; S Hörsch; Amos Bairoch; W Chen; Oyvind Edvardsen; Fabien Campagne; Gert Vriend
GPCRDB: an information system for G protein-coupled receptors.
Nucleic acids research 1998;26(1):275-9.
1998: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
Nucleic acids research 1998;26(1):38-42.
1997: María-Trinidad Gallegos; R Schleif; Amos Bairoch; Kay Hofmann; Juan L Ramos
Arac/XylS family of transcriptional regulators.
Microbiology and molecular biology reviews : MMBR 1997;61(4):393-410.
1997: E A Green; S Pietrokovski; Steven Henikoff; P Bork; T Attwood; Leroy Hood; Amos Bairoch
Genome maps 8. Building gene families. Wall chart.
Science (New York, N.Y.) 1997;278(5338):615-30.
1997: Peter I Mackenzie; Ida S Owens; Brian Burchell; Karl Walter Bock; Amos Bairoch; A Bélanger; Sylvie Fournel-Gigleux; M Green; Dean W Hum; Takashi Iyanagi; D Lancet; P Louisot; Jacques Magdalou; Jayanta Roy-Chowdhury; Joseph K Ritter; H Schachter; Thomas R Tephly; K F Tipton; Daniel W Nebert
The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence.
Pharmacogenetics 1997;7(4):255-69.
1997: C Freiberg; R Fellay; Amos Bairoch; William J Broughton; A Rosenthal; Xavier Perret
Molecular basis of symbiosis between Rhizobium and legumes.
Nature 1997;387(6631):394-401.
1997: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence database: its relevance to human molecular medical research.
Journal of molecular medicine (Berlin, Germany) 1997;75(5):312-6.
1997: Marc R Wilkins; I Lindskog; Elisabeth Gasteiger; Amos Bairoch; jean-charles sanchez; Denis F Hochstrasser; Ron D Appel
Detailed peptide characterization using PEPTIDEMASS--a World-Wide-Web-accessible tool.
Electrophoresis 1997;18(3-4):403-8.
1997: Rolf Apweiler; Alain Gateau; Sergio Contrino; Maria J Martin; VL Junker; Claire O'Donovan; F Lang; N Mitaritonna; S Kappus; Amos Bairoch
Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():33-43.
1997: Amos Bairoch; Philipp Bucher; Kay Hofmann
The PROSITE database, its status in 1997.
Nucleic acids research 1997;25(1):217-21.
1997: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
Nucleic acids research 1997;25(1):31-6.
1996: M R Wilkins; D F Hochstrasser; jean-charles sanchez; Amos Bairoch; Ron D Appel
Integrating two-dimensional gel databases using the Melanie II software.
Trends in biochemical sciences 1996;21(12):496-7.
1996: P Bork; Amos Bairoch
Go hunting in sequence databases but watch out for the traps.
Trends in genetics : TIG 1996;12(10):425-7.
1996: Bernard Henrissat; Amos Bairoch
Updating the sequence-based classification of glycosyl hydrolases.
The Biochemical journal 1996;316 ( Pt 2)():695-6.
1996: jean-charles sanchez; O Golaz; S Frutiger; D Schaller; Ron D Appel; Amos Bairoch; GJ Hughes; Denis F Hochstrasser
The yeast SWISS-2DPAGE database.
Electrophoresis 1996;17(3):556-65.
1996: C Pasquali; S Frutiger; Marc R Wilkins; GJ Hughes; Ron D Appel; Amos Bairoch; D Schaller; jean-charles sanchez; Denis F Hochstrasser
Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database.
Electrophoresis 1996;17(3):547-55.
1996: Ron D Appel; Amos Bairoch; jean-charles sanchez; J R Vargas; O Golaz; C Pasquali; Denis F Hochstrasser
Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data.
Electrophoresis 1996;17(3):540-6.
1996: R Dölz; M O Mossé; Piotr P Slonimski; Amos Bairoch; P Linder
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces.
Nucleic acids research 1996;24(1):50-2.
1996: Amos Bairoch
The ENZYME data bank in 1995.
Nucleic acids research 1996;24(1):221-2.
1996: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its new supplement TREMBL.
Nucleic acids research 1996;24(1):21-5.
1996: Amos Bairoch; P Bucher; Kay Hofmann
The PROSITE database, its status in 1995.
Nucleic acids research 1996;24(1):189-96.
1996: Ron D Appel; jean-charles sanchez; Amos Bairoch; O Golaz; F Ravier; C Pasquali; GJ Hughes; Denis F Hochstrasser
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995.
Nucleic acids research 1996;24(1):180-1.
1995: jean-charles sanchez; Ron D Appel; O Golaz; C Pasquali; F Ravier; Amos Bairoch; Denis F Hochstrasser
Inside SWISS-2DPAGE database.
Electrophoresis 1995;16(7):1131-51.
1995: Denis F Hochstrasser; Ron D Appel; O Golaz; C Pasquali; jean-charles sanchez; Amos Bairoch
Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy.
Methods of information in medicine 1995;34(1-2):75-8.
1994: Amos Bairoch
The ENZYME data bank.
Nucleic acids research 1994;22(17):3626-7.
1994: Amos Bairoch; P Bucher
PROSITE: recent developments.
Nucleic acids research 1994;22(17):3583-9.
1994: Ron D Appel; jean-charles sanchez; Amos Bairoch; O Golaz; F Ravier; C Pasquali; GJ Hughes; Denis F Hochstrasser
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis.
Nucleic acids research 1994;22(17):3581-2.
1994: Amos Bairoch; B Boeckmann
The SWISS-PROT protein sequence data bank: current status.
Nucleic acids research 1994;22(17):3578-80.
1994: R Dölz; M O Mossé; Piotr P Slonimski; Amos Bairoch; P Linder
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces.
Nucleic acids research 1994;22(17):3459-61.
1994: R D Appel; Amos Bairoch; D F Hochstrasser
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.
Trends in biochemical sciences 1994;19(6):258-60.
1994: Jonathan Reizer; S Buskirk; Amos Bairoch; A Reizer; Milton H Saier
A novel zinc-binding motif found in two ubiquitous deaminase families.
Protein science : a publication of the Protein Society 1994;3(5):853-6.
1994: P Bucher; Amos Bairoch
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():53-61.
1993: Ron D Appel; jean-charles sanchez; Amos Bairoch; O Golaz; M Miu; J R Vargas; Denis F Hochstrasser
SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images.
Electrophoresis 1993;14(11):1232-8.
1993: O Golaz; GJ Hughes; S Frutiger; N Paquet; Amos Bairoch; C Pasquali; jean-charles sanchez; Jean-Daniel Tissot; Ron D Appel; Claude Walzer
Plasma and red blood cell protein maps: update 1993.
Electrophoresis 1993;14(11):1223-31.
1993: GJ Hughes; S Frutiger; N Paquet; C Pasquali; jean-charles sanchez; Jean-Daniel Tissot; Amos Bairoch; Ron D Appel; Denis F Hochstrasser
Human liver protein map: update 1993.
Electrophoresis 1993;14(11):1216-22.
1993: Bernard Henrissat; Amos Bairoch
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.
The Biochemical journal 1993;293 ( Pt 3)():781-8.
1993: Amos Bairoch
The ENZYME data bank.
Nucleic acids research 1993;21(13):3155-6.
1993: Amos Bairoch
The PROSITE dictionary of sites and patterns in proteins, its current status.
Nucleic acids research 1993;21(13):3097-103.
1993: Amos Bairoch; B Boeckmann
The SWISS-PROT protein sequence data bank, recent developments.
Nucleic acids research 1993;21(13):3093-6.
1993: Jonathan Reizer; A Reizer; Amos Bairoch; Milton H Saier
A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination.
Research in microbiology 1993;144(5):341-7.
1993: Amos Bairoch
A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators.
Nucleic acids research 1993;21(10):2515.
1993: D Scherly; Thierry Nouspikel; J Corlet; Catherine Ucla; Amos Bairoch; Stuart G Clarkson
Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2.
Nature 1993;363(6425):182-5.
1992: Denis F Hochstrasser; S Frutiger; N Paquet; Amos Bairoch; F Ravier; C Pasquali; jean-charles sanchez; Jean-Daniel Tissot; B Bjellqvist; R Vargas
Human liver protein map: a reference database established by microsequencing and gel comparison.
Electrophoresis 1992;13(12):992-1001.
1992: Ferruccio Breviario; E M d'Aniello; Josée Golay; Giuseppe Peri; B Bottazzi; Amos Bairoch; S Saccone; R Marzella; V Predazzi; M Rocchi
Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component.
The Journal of biological chemistry 1992;267(31):22190-7.
1992: M S Boguski; Amos Bairoch; T K Attwood; G S Michaels
Proto-vav and gene expression.
Nature 1992;358(6382):113.
1992: Amos Bairoch; B Boeckmann
The SWISS-PROT protein sequence data bank.
Nucleic acids research 1992;20 Suppl():2019-22.
1992: Amos Bairoch
PROSITE: a dictionary of sites and patterns in proteins.
Nucleic acids research 1992;20 Suppl():2013-8.
1992: Ellen Neidle; C Hartnett; L Nicholas Ornston; Amos Bairoch; M Rekik; Shigeaki Harayama
cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily.
European journal of biochemistry / FEBS 1992;204(1):113-20.
1991: Shigeaki Harayama; M Rekik; Amos Bairoch; Ellen Neidle; L Nicholas Ornston
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases.
Journal of bacteriology 1991;173(23):7540-8.
1991: Ellen Neidle; C Hartnett; L Nicholas Ornston; Amos Bairoch; M Rekik; Shigeaki Harayama
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases.
Journal of bacteriology 1991;173(17):5385-95.
1991: Amos Bairoch; B Boeckmann
The SWISS-PROT protein sequence data bank.
Nucleic acids research 1991;19 Suppl():2247-9.
1991: Amos Bairoch
PROSITE: a dictionary of sites and patterns in proteins.
Nucleic acids research 1991;19 Suppl():2241-5.
1991: Amos Bairoch
SEQANALREF: a sequence analysis bibliographic reference databank.
Computer applications in the biosciences : CABIOS 1991;7(2):268.
1990: Amos Bairoch; Jos A Cox
EF-hand motifs in inositol phospholipid-specific phospholipase C.
FEBS letters 1990;269(2):454-6.
1990: S Chauvaux; P Beguin; J P Aubert; K M Bhat; L A Gow; T M Wood; Amos Bairoch
Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D.
The Biochemical journal 1990;265(1):261-5.
1989: Arthur M Lesk; Ross Boswell; V I Lesk; V E Lesk; Amos Bairoch
A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank.
Protein sequences & data analysis 1989;2(4):295-308.
1989: Victor Jongeneel; J Bouvier; Amos Bairoch
A unique signature identifies a family of zinc-dependent metallopeptidases.
FEBS letters 1989;242(2):211-4.
1988: J Moore; A Engelberg; Amos Bairoch
Using PC/GENE for protein and nucleic acid analysis.
BioTechniques 1988;6(6):566-72.
1988: J A Cox; Amos Bairoch
Sequence similarities in calcium-binding proteins.
Nature 1988;331(6156):491.
1988: Amos Bairoch; J M Claverie
Sequence patterns in protein kinases.
Nature 1988;331(6151):22.
1987: Shigeaki Harayama; M Rekik; A Wasserfallen; Amos Bairoch
Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids.
Molecular & general genetics : MGG 1987;210(2):241-7.
1987: N Mermod; J L Ramos; Amos Bairoch; K N Timmis
The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon.
Molecular & general genetics : MGG 1987;207(2-3):349-54.
1982: Amos Bairoch
Evidence for the existence of a mutated enkephalin sequence in preproenkephalin.
FEBS letters 1982;145(1):121-2.
1982: Amos Bairoch
Suggestion to research groups working on protein and peptide sequence.
The Biochemical journal 1982;203(2):527-8.