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David King

Research Profile

Chemicals & Drugs

Genes & Molecular Sequences

Procedures

Anatomy

Erythroid Cells

Living Beings

Phenomena

Evolution, Molecular

Concepts & Ideas

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Publications

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Yong Cheng; Weisheng Wu; Swathi Ashok Kumar; Duonan Yu; Wulan Deng; Tamara Tripic; David C King; Kuan-Bei Chen; Ying Zhang; Daniela Drautz; Belinda Giardine; Stephan C Schuster; Webb Miller; Francesca Chiaromonte; Yu Zhang; Gerd A Blobel; Mitchell J Weiss; Ross C Hardison
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression.
Ying Zhang; Weisheng Wu; Yong Cheng; David C King; Robert S Harris; James TAYLOR; Francesca Chiaromonte; Ross C Hardison
Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.
Yong Cheng; David C King; Lou Dore; Xinmin Zhang; Yuepin Zhou; Ying Zhang; Christine Dorman; Demesew Abebe; Swathi A Kumar; Francesca Chiaromonte; Webb Miller; Roland D Green; Mitchell J Weiss; Ross C Hardison
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.

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All Publications

2009: Yong Cheng; Weisheng Wu; Swathi Ashok Kumar; Duonan Yu; Wulan Deng; Tamara Tripic; David C King; Kuan-Bei Chen; Ying Zhang; Daniela Drautz; Belinda Giardine; Stephan C Schuster; Webb Miller; Francesca Chiaromonte; Yu Zhang; Gerd A Blobel; Mitchell J Weiss; Ross C Hardison
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression.
Genome research 2009;19(12):2172-84.
2009: Ying Zhang; Weisheng Wu; Yong Cheng; David C King; Robert S Harris; James TAYLOR; Francesca Chiaromonte; Ross C Hardison
Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.
Nucleic acids research 2009;37(21):7024-38.
2008: Yong Cheng; David C King; Lou Dore; Xinmin Zhang; Yuepin Zhou; Ying Zhang; Christine Dorman; Demesew Abebe; Swathi A Kumar; Francesca Chiaromonte; Webb Miller; Roland D Green; Mitchell J Weiss; Ross C Hardison
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.
Genome research 2008;18(12):1896-905.
2007: Webb Miller; Kate Rosenbloom; Ross C Hardison; Minmei Hou; James TAYLOR; Brian J Raney; Richard Burhans; David C King; Robert Baertsch; Daniel Blankenberg; Sergei L Kosakovsky Pond; Anton Nekrutenko; Belinda Giardine; Robert S Harris; Svitlana Tyekucheva; Mark Diekhans; Tom H Pringle; William J Murphy; Arthur Lesk; George Weinstock; Kerstin Lindblad-Toh; Richard A Gibbs; Eric S Lander; Adam Siepel; David Haussler; W James Kent
28-way vertebrate alignment and conservation track in the UCSC Genome Browser.
Genome research 2007;17(12):1797-808.
2007: David C King; James TAYLOR; Ying Zhang; Yong Cheng; Heather A Lawson; Joel Martin; Francesca Chiaromonte; Webb Miller; Ross C Hardison
Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data.
Genome research 2007;17(6):775-86.
2006: James TAYLOR; Svitlana Tyekucheva; David C King; Ross C Hardison; Webb Miller; Francesca Chiaromonte
ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements.
Genome research 2006;16(12):1596-604.
2006: Hao Wang; Ying Zhang; Yong Cheng; Yuepin Zhou; David C King; James TAYLOR; Francesca Chiaromonte; Jyotsna Kasturi; Hanna Petrykowska; Brian Gibb; Christine Dorman; Webb Miller; Lou Dore; john welch; Mitchell J Weiss; Ross C Hardison
Experimental validation of predicted mammalian erythroid cis-regulatory modules.
Genome research 2006;16(12):1480-92.
2005: David C King; James TAYLOR; Laura Elnitski; Francesca Chiaromonte; Webb Miller; Ross C Hardison
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.
Genome research 2005;15(8):1051-60.
2003: Nigam Shah; David C King; P N Shah; Nina V Fedoroff
A tool-kit for cDNA microarray and promoter analysis.
Bioinformatics (Oxford, England) 2003;19(14):1846-8.