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Daniel Klionsky

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Stephen E Kaiser; Daniel J Klionsky; Kai Mao; Yu Qiu; Julie E Coats; Brenda A Schulman
Structures of Atg7-Atg3 and Atg7-Atg10 reveal noncanonical mechanisms of E2 recruitment by the autophagy E1.
Amélie Bernard; Daniel J Klionsky
Autophagosome formation: tracing the source.
Daniel J Klionsky
Ancient autophagy.

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All Publications

2013: Stephen E Kaiser; Daniel J Klionsky; Kai Mao; Yu Qiu; Julie E Coats; Brenda A Schulman
Structures of Atg7-Atg3 and Atg7-Atg10 reveal noncanonical mechanisms of E2 recruitment by the autophagy E1.
Autophagy 2013;9(5):778-80.
2013: Amélie Bernard; Daniel J Klionsky
Autophagosome formation: tracing the source.
Developmental cell 2013;25(2):116-7.
2013: Daniel J Klionsky
Ancient autophagy.
Autophagy 2013;9(4):445-6.
2013: Daniel J Klionsky
Finding autophagy: it's a question of how you look at it.
Autophagy 2013;9(3):267.
2013: Daniel J Klionsky
Why just eat in, when you can also eat out?
Autophagy 2013;9(2):119.
2013: Meiyan Jin; Xu Liu; Daniel J Klionsky
SnapShot: Selective autophagy.
Cell 2013;152(1-2):368-368.e2.
2013: Maika Deffieu; Daniel J Klionsky; Stéphen Manon; Benoît Pinson; Bénédicte Salin; Ingrid Bhatia-Kiššová; Nadine Camougrand
Increased levels of reduced cytochrome b and mitophagy components are required to trigger nonspecific autophagy following induced mitochondrial dysfunction.
Journal of cell science 2013;126(Pt 2):415-26.
2012: Stephen E Kaiser; Daniel J Klionsky; Igor Kurinov; Kai Mao; Jennifer L Olszewski; Alan Deng; David M Duda; Timothy D Fenn; Asad M Taherbhoy; Shanshan Yu; Brenda A Schulman
Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures.
Nature structural & molecular biology 2012;19(12):1242-9.
2012: Steven K Backues; Melinda A Lynch-Day; Daniel J Klionsky
The Ume6-Sin3-Rpd3 complex regulates ATG8 transcription to control autophagosome size.
Autophagy 2012;8(12):1835-6.
2012: Ke Wang; Zhifen Yang; Xu Liu; Kai Mao; Usha Nair; Daniel J Klionsky
Phosphatidylinositol 4-kinases are required for autophagic membrane trafficking.
The Journal of biological chemistry 2012;287(45):37964-72.
2012: Dalibor Mijaljica; Taras Y Nazarko; Mark Prescott; Anne Simonsen; Ai Yamamoto; Hong Zhang; John H Brumell; Wei-Pang Huang; Daniel J Klionsky; Masaaki Komatsu; Rodney J Devenish
Receptor protein complexes are in control of autophagy.
Autophagy 2012;8(11):1701-5.
2012: Eduardo Cebollero; J Bernd Helms; Daniel J Klionsky; Ester Rieter; Aniek van der Vaart; Mantong Zhao; Fulvio Reggiori
Phosphatidylinositol-3-phosphate clearance plays a key role in autophagosome completion.
Current biology : CB 2012;22(17):1545-53.
2012: Daniel J Klionsky
Look people, "Atg" is an abbreviation for "autophagy-related." That's it.
Autophagy 2012;8(9):1281-2.
2012: Daniel J Klionsky; Stanley J F Laulederkind; Elspeth A Bruford; J Michael Cherry; Jonathan Hodgkin; Amy G Singer
In the beginning there was babble...
Autophagy 2012;8(8):1165-7.
2012: Steven K Backues; Daniel J Klionsky
Atg11: a Rab-dependent, coiled-coil membrane protein that acts as a tether for autophagy.
Autophagy 2012;8(8):1275-8.
2012: Wei-Lien Yen; Daniel J Klionsky
Proteinase protection of prApe1 as a tool to monitor Cvt vesicle/autophagosome biogenesis.
Autophagy 2012;8(8):1245-9.
2012: Clinton R Bartholomew; Zhou Du; Ken Inoki; Meiyan Jin; Avani Kamath; Melinda A Lynch-Day; Tsukasa Suzuki; Midori Umekawa; Zhiping Xie; Mantong Zhao; Steven K Backues; Daniel J Klionsky
Ume6 transcription factor is part of a signaling cascade that regulates autophagy.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(28):11206-10.
2012: Daniel J Klionsky
The autophagy community.
Autophagy 2012;8(7):1003.
2012: Zhong-Qiu Yu; Xi-Long Zheng; Shenshen Zou; Yong Chen; Bing Hong; Fen-Jun Jiang; Daniel J Klionsky; Yongheng Liang; Tao Ni; Hai-Yan Wang; Zhiping Xie
Dual roles of Atg8-PE deconjugation by Atg4 in autophagy.
Autophagy 2012;8(6):883-92.
2012: Midori Umekawa; Daniel J Klionsky
Ksp1 kinase regulates autophagy via the target of rapamycin complex 1 (TORC1) pathway.
The Journal of biological chemistry 2012;287(20):16300-10.
2012: Usha Nair; Fulvio Reggiori; Zhiping Xie; Wei-Lien Yen; M Baba; Yang Cao; Muriel Mari; Daniel J Klionsky
A role for Atg8-PE deconjugation in autophagosome biogenesis.
Autophagy 2012;8(5):780-93.
2012: Yohta Shimada; Daniel J Klionsky
Autophagy contributes to lysosomal storage disorders.
Autophagy 2012;8(5):715-6.
2012: Daniel J Klionsky; James H Hurley
Self-eating with your fingers.
Cell research 2012;22(5):783-5.
2012: Daniel J Klionsky
A human autophagy interaction network.
Autophagy 2012;8(4):439-41.
2012: Melinda A Lynch-Day; Kai Mao; Ke Wang; Mantong Zhao; Daniel J Klionsky
The role of autophagy in Parkinson's disease.
Cold Spring Harbor perspectives in medicine 2012;2(4):a009357.
2012: Daniel J Klionsky; Alan R Saltiel
Autophagy works out.
Cell metabolism 2012;15(3):273-4.
2012: Rie Takahashi; Jeffrey Miller; Daniel J Klionsky
SNARE Dance: a musical interpretation of Atg9 transport to the tubulovesicular cluster.
Autophagy 2012;8(3):294-6.
2012: Daniel J Klionsky
Protocols, toolboxes and resource papers.
Autophagy 2012;8(3):291.
2012: Daniel J Klionsky
Do you want to read about a biochemic and genetical analysis of the physiologic role of the autophagical process? No.
Autophagy 2012;8(2):153-4.
2012: Rodney J Devenish; Daniel J Klionsky
Autophagy: mechanism and physiological relevance 'brewed' from yeast studies.
Frontiers in bioscience (Scholar edition) 2012;4():1354-63.
2012: Midori Umekawa; Daniel J Klionsky
The Cytoplasm-to-Vacuole Targeting Pathway: A Historical Perspective.
International journal of cell biology 2012;2012():142634.
2011: Usha Nair; Michael Thumm; Daniel J Klionsky; Roswitha Krick
GFP-Atg8 protease protection as a tool to monitor autophagosome biogenesis.
Autophagy 2011;7(12):1546-50.
2011: Kai Mao; Daniel J Klionsky
MAPKs regulate mitophagy in Saccharomyces cerevisiae.
Autophagy 2011;7(12):1564-5.
2011: Usha Nair; Daniel J Klionsky
Autophagosome biogenesis requires SNAREs.
Autophagy 2011;7(12):1570-2.
2011: Daniel J Klionsky; Guido Kroemer; Beth Levine; Thomas J Melia; Noboru Mizushima; David C Rubinsztein; Anne Simonsen; Andrew Thorburn; Michael Thumm; Eric H Baehrecke; John H Brumell; Charleen T Chu; Patrice Codogno; Ana Maria Cuervo; Jayanta Debnath; Vojo Deretic; Zvulun Elazar; Eeva-Liisa Eskelinen; Steven Finkbeiner; Juan Fueyo-Margareto; David Gewirtz; Marja Jäättelä; Sharon A Tooze
A comprehensive glossary of autophagy-related molecules and processes (2nd edition).
Autophagy 2011;7(11):1273-94.
2011: Daniel J Klionsky
For the last time, it is GFP-Atg8, not Atg8-GFP (and the same goes for LC3).
Autophagy 2011;7(10):1093-4.
2011: Daniel J Klionsky; Andriy Nemchenko
There is more to autophagy than induction: regulating the roller coaster.
Autophagy 2011;7(8):801-2.
2011: Usha Nair; Fulvio Reggiori; Diana Richerson; Ke Wang; Wei-Lien Yen; Misuzu Baba; Noor Gammoh; Jiefei Geng; Janice Griffith; Xuejun Jiang; Anjali Jotwani; James A McNew; Thomas Melia; Tyler Moss; Shanta Nag; Daniel J Klionsky
SNARE proteins are required for macroautophagy.
Cell 2011;146(2):290-302.
2011: Robert W Taylor; Clinton R Bartholomew; Daniel J Klionsky; Taylur P Ma; Cecilia B Moens; Luyuan Pan; Jenny Y Qi; Anna K Talaga; Joshua T Gamse
Asymmetric inhibition of Ulk2 causes left-right differences in habenular neuropil formation.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2011;31(27):9869-78.
2011: Beat Nyfeler; Branko Radetich; Ellen Triantafellow; Christopher J Wilson; Yanyi Zhu; Philip Bergman; Peter M Finan; Daniel J Klionsky; Leon O Murphy
Relieving autophagy and 4EBP1 from rapamycin resistance.
Molecular and cellular biology 2011;31(14):2867-76.
2011: Alfred J Meijer; Daniel J Klionsky
Vps34 is a phosphatidylinositol 3-kinase, not a phosphoinositide 3-kinase.
Autophagy 2011;7(6):563-4.
2011: Kai Mao; Ke Wang; Mantong Zhao; Tao Xu; Daniel J Klionsky
Two MAPK-signaling pathways are required for mitophagy in Saccharomyces cerevisiae.
The Journal of cell biology 2011;193(4):755-67.
2011: Tomotake Kanki; Daniel J Klionsky; Koji Okamoto
Mitochondria autophagy in yeast.
Antioxidants & redox signaling 2011;14(10):1989-2001.
2011: Kai Mao; Daniel J Klionsky
AMPK activates autophagy by phosphorylating ULK1.
Circulation research 2011;108(7):787-8.
2011: Steven K Backues; Daniel J Klionsky
Autophagy gets in on the regulatory act.
Journal of molecular cell biology 2011;3(2):76-7.
2011: Ke Wang; Daniel J Klionsky
Mitochondria removal by autophagy.
Autophagy 2011;7(3):297-300.
2011: Shahab Shahnazari; Anton Namolovan; Daniel J Klionsky; John H Brumell
A role for diacylglycerol in antibacterial autophagy.
Autophagy 2011;7(3):331-3.
2011: Mantong Zhao; Daniel J Klionsky
AMPK-dependent phosphorylation of ULK1 induces autophagy.
Cell metabolism 2011;13(2):119-20.
2011: Yongqiang Chen; Daniel J Klionsky
The regulation of autophagy - unanswered questions.
Journal of cell science 2011;124(Pt 2):161-70.
2011: Daniel J Klionsky; Clinton R Bartholomew
Quick Quiz - Is it Really Recall?
Journal of microbiology & biology education : JMBE 2011;12(1):78-9.
2011: Ju Huang; Cheryl L Birmingham; Shahab Shahnazari; Jessica Shiu; Yiyu T Zheng; Adam C Smith; Kenneth G Campellone; Won Do Heo; Samantha Gruenheid; Tobias Meyer; Matthew D Welch; Nicholas T Ktistakis; Peter Kijun Kim; Daniel J Klionsky; John H Brumell
Antibacterial autophagy occurs at PI(3)P-enriched domains of the endoplasmic reticulum and requires Rab1 GTPase.
Autophagy 2011;7(1):17-26.
2010: Daniel J Klionsky; Per O Seglen
The Norse god of autophagy. Interviewed by Daniel J Klionsky.
Autophagy 2010;6(8):1017-31.
2010: Jiefei Geng; Daniel J Klionsky
The Golgi as a potential membrane source for autophagy.
Autophagy 2010;6(7):950-1.
2010: Muriel Mari; Janice Griffith; Ester Rieter; Lakshmi Krishnappa; Daniel J Klionsky; Fulvio Reggiori
An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis.
The Journal of cell biology 2010;190(6):1005-22.
2010: Zhifen Yang; Daniel J Klionsky
Eaten alive: a history of macroautophagy.
Nature cell biology 2010;12(9):814-22.
2010: Daniel J Klionsky
The molecular machinery of autophagy and its role in physiology and disease.
Seminars in cell & developmental biology 2010;21(7):663.
2010: Yuko Inoue; Daniel J Klionsky
Regulation of macroautophagy in Saccharomyces cerevisiae.
Seminars in cell & developmental biology 2010;21(7):664-70.
2010: Shahab Shahnazari; Wei-Lien Yen; Cheryl L Birmingham; Jessica Shiu; Anton Namolovan; Yiyu T Zheng; Keiko Nakayama; Daniel J Klionsky; John H Brumell
A diacylglycerol-dependent signaling pathway contributes to regulation of antibacterial autophagy.
Cell host & microbe 2010;8(2):137-46.
2010: Nobuo Munakata; Daniel J Klionsky
"Autophagy suite": Atg9 cycling in the cytoplasm to vacuole targeting pathway.
Autophagy 2010;6(6):679-85.
2010: Daniel J Klionsky
The autophagy connection.
Developmental cell 2010;19(1):11-2.
2010: Patrick Brest; E A Corcelle; A Cesaro; A Chargui; A Belaïd; Daniel J Klionsky; Valérie Vouret-Craviari; Xavier Hebuterne; Paul Hofman; Baharia Mograbi
Autophagy and Crohn's disease: at the crossroads of infection, inflammation, immunity, and cancer.
Current molecular medicine 2010;10(5):486-502.
2010: Congcong He; Daniel J Klionsky
Analyzing autophagy in zebrafish.
Autophagy 2010;6(5):642-4.
2010: Jiefei Geng; Usha Nair; Kyoko Yasumura-Yorimitsu; Daniel J Klionsky
Post-Golgi Sec proteins are required for autophagy in Saccharomyces cerevisiae.
Molecular biology of the cell 2010;21(13):2257-69.
2010: Daniel J Klionsky; Guido Kroemer; Beth Levine; Noboru Mizushima; David C Rubinsztein; Michael Thumm; Patrice Codogno; Ana Maria Cuervo; Vojo Deretic; Zvulun Elazar; Juan Fueyo-Margareto; David A Gewirtz; Sharon A Tooze
A comprehensive glossary of autophagy-related molecules and processes.
Autophagy 2010;6(4):438-48.
2010: Molly A Lynch-Day; Deepali Bhandari; Shekar Menon; Ju Huang; Huaqing Cai; Clinton R Bartholomew; John H Brumell; Susan Ferro-Novick; Daniel J Klionsky
Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(17):7811-6.
2010: Zhifen Yang; Jiefei Geng; Wei-Lien Yen; Ke Wang; Daniel J Klionsky
Positive or negative roles of different cyclin-dependent kinase Pho85-cyclin complexes orchestrate induction of autophagy in Saccharomyces cerevisiae.
Molecular cell 2010;38(2):250-64.
2010: Usha Nair; Yang Cao; Zhiping Xie; Daniel J Klionsky
Roles of the lipid-binding motifs of Atg18 and Atg21 in the cytoplasm to vacuole targeting pathway and autophagy.
The Journal of biological chemistry 2010;285(15):11476-88.
2010: Daniel J Klionsky
Daniel Klionsky: A full plate for autophagy. Interview by Ben Short.
The Journal of cell biology 2010;189(1):8-9.
2010: Melinda A Lynch-Day; Daniel J Klionsky
The Cvt pathway as a model for selective autophagy.
FEBS letters 2010;584(7):1359-66.
2010: Zhifen Yang; Daniel J Klionsky
Mammalian autophagy: core molecular machinery and signaling regulation.
Current opinion in cell biology 2010;22(2):124-31.
2010: Tomotake Kanki; Daniel J Klionsky
The molecular mechanism of mitochondria autophagy in yeast.
Molecular microbiology 2010;75(4):795-800.
2010: Tomotake Kanki; Ke Wang; Daniel J Klionsky
A genomic screen for yeast mutants defective in mitophagy.
Autophagy 2010;6(2):278-80.
2010: Daniel J Klionsky; Jon D Lane
Alternative macroautophagy.
Autophagy 2010;6(2):201.
2010: Karin Thevissen; Wei-Lien Yen; Didac Carmona-Gutierrez; Jolanta Idkowiak-Baldys; An M Aerts; Isabelle E J A François; Frank Madeo; Daniel J Klionsky; Yusuf A Hannun; Bruno P A Cammue
Skn1 and Ipt1 negatively regulate autophagy in Saccharomyces cerevisiae.
FEMS microbiology letters 2010;303(2):163-8.
2010: Wei-Lien Yen; Takahiro Shintani; Usha Nair; Yang Cao; Brian C Richardson; Zhijian Li; Frederick M Hughson; M Baba; Daniel J Klionsky
The conserved oligomeric Golgi complex is involved in double-membrane vesicle formation during autophagy.
The Journal of cell biology 2010;188(1):101-14.
2010: Jiefei Geng; Daniel J Klionsky
Determining Atg protein stoichiometry at the phagophore assembly site by fluorescence microscopy.
Autophagy 2010;6(1):144-7.
2010: Tibor Vellai; Daniel J Klionsky
A second report from the EMBO conference on autophagy: mechanism, regulation and selectivity of autophagy.
Autophagy 2010;6(1):197-8.
2010: David S Goodsell; Daniel J Klionsky
Artophagy: the art of autophagy--the Cvt pathway.
Autophagy 2010;6(1):3-6.
2009: Daniel J Klionsky
A report from the EMBO conference on autophagy.
Autophagy 2009;5(8):1235-9.
2009: Tomotake Kanki; Dongchon Kang; Daniel J Klionsky
Monitoring mitophagy in yeast: the Om45-GFP processing assay.
Autophagy 2009;5(8):1186-9.
2009: Tomotake Kanki; Ke Wang; Misuzu Baba; Clinton R Bartholomew; Melinda A Lynch-Day; Zhou Du; Jiefei Geng; Kai Mao; Zhifen Yang; Wei-Lien Yen; Daniel J Klionsky
A genomic screen for yeast mutants defective in selective mitochondria autophagy.
Molecular biology of the cell 2009;20(22):4730-8.
2009: Tomotake Kanki; Daniel J Klionsky
Atg32 is a tag for mitochondria degradation in yeast.
Autophagy 2009;5(8):1201-2.
2009: Tibor Vellai; Krisztina Takács-Vellai; Miklós Sass; Daniel J Klionsky
The regulation of aging: does autophagy underlie longevity?
Trends in cell biology 2009;19(10):487-94.
2009: Iryna Monastyrska; Ester Rieter; Daniel J Klionsky; Fulvio Reggiori
Multiple roles of the cytoskeleton in autophagy.
Biological reviews of the Cambridge Philosophical Society 2009;84(3):431-48.
2009: Tomotake Kanki; Daniel J Klionsky
Mitochondrial abnormalities drive cell death in Wolfram syndrome 2.
Cell research 2009;19(8):922-3.
2009: L Galluzzi; S A Aaronson; J Abrams; E S Alnemri; D W Andrews; E H Baehrecke; N G Bazan; M V Blagosklonny; K Blomgren; C Borner; Dale E Bredesen; C Brenner; M Castedo; J A Cidlowski; Aaron Ciechanover; G M Cohen; V De Laurenzi; R De Maria; Mohanish Deshmukh; Brian David Dynlacht; Wafik S El-Deiry; R A Flavell; S Fulda; C Garrido; P Golstein; M-L Gougeon; D R Green; Hinrich Gronemeyer; Gyorgy Hajn\u2264czky; J Marie Hardwick; M O Hengartner; H Ichijo; M Jäättelä; O Kepp; A Kimchi; Daniel J Klionsky; R A Knight; Sally Kornbluth; S Kumar; Beth Levine; S A Lipton; E Lugli; F Madeo; W Malomi; J-C W Marine; S J Martin; J P Medema; P Mehlen; G Melino; Ute M Moll; E Morselli; S Nagata; D W Nicholson; P Nicotera; G Nuñez; M Oren; J Penninger; S Pervaiz; M E Peter; M Piacentini; J H M Prehn; H Puthalakath; G A Rabinovich; R Rizzuto; C M P Rodrigues; David C Rubinsztein; T Rudel; LUCA SCORRANO; H-U Simon; H Steller; J Tschopp; Y Tsujimoto; P Vandenabeele; I Vitale; K H Vousden; R J Youle; J Yuan; B Zhivotovsky; G Kroemer
Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes.
Cell death and differentiation 2009;16(8):1093-107.
2009: Tomotake Kanki; Ke Wang; Yang Cao; M Baba; Daniel J Klionsky
Atg32 is a mitochondrial protein that confers selectivity during mitophagy.
Developmental cell 2009;17(1):98-109.
2009: David C Rubinsztein; Ana Maria Cuervo; Brinda Ravikumar; Sovan Sarkar; Viktor Korolchuk; Susmita Kaushik; Daniel J Klionsky
In search of an "autophagomometer".
Autophagy 2009;5(5):585-9.
2009: Yang Cao; Usha Nair; Kyoko Yasumura-Yorimitsu; Daniel J Klionsky
A multiple ATG gene knockout strain for yeast two-hybrid analysis.
Autophagy 2009;5(5):699-705.
2009: Tomohiro Yorimitsu; Congcong He; Ke Wang; Daniel J Klionsky
Tap42-associated protein phosphatase type 2A negatively regulates induction of autophagy.
Autophagy 2009;5(5):616-24.
2009: Congcong He; Clinton R Bartholomew; Weibin Zhou; Daniel J Klionsky
Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos.
Autophagy 2009;5(4):520-6.
2009: Daniel J Klionsky
Crohn's disease, autophagy, and the Paneth cell.
The New England journal of medicine 2009;360(17):1785-6.
2009: Daniel J Klionsky
A work in progress.
Autophagy 2009;5(3):289.
2009: Congcong He; M Baba; Daniel J Klionsky
Double duty of Atg9 self-association in autophagosome biogenesis.
Autophagy 2009;5(3):385-7.
2009: Daniel J Klionsky
Crohn disease and autophagy.
Autophagy 2009;5(2):139.
2009: Zhiping Xie; Usha Nair; Jiefei Geng; Maciej B Szefler; Edward D Rothman; Daniel J Klionsky
Indirect estimation of the area density of Atg8 on the phagophore.
Autophagy 2009;5(2):217-20.
2009: Zhifen Yang; Daniel J Klionsky
An overview of the molecular mechanism of autophagy.
Current topics in microbiology and immunology 2009;335():1-32.
2009: Daniel J Klionsky
Putting the upper-division cart before the introductory horse.
CBE life sciences education 2009;8(3):155-6.
2009: Congcong He; Daniel J Klionsky
Regulation mechanisms and signaling pathways of autophagy.
Annual review of genetics 2009;43():67-93.
2009: Daniel J Klionsky
Autophagy in mammalian systems, Part B. Preface.
Methods in enzymology 2009;452():xxi-xxii.
2008: Congcong He; M Baba; Yang Cao; Daniel J Klionsky
Self-interaction is critical for Atg9 transport and function at the phagophore assembly site during autophagy.
Molecular biology of the cell 2008;19(12):5506-16.
2008: Tomotake Kanki; Daniel J Klionsky
Mitophagy in yeast occurs through a selective mechanism.
The Journal of biological chemistry 2008;283(47):32386-93.
2008: Yang Cao; Daniel J Klionsky
New insights into autophagy using a multiple knockout strain.
Autophagy 2008;4(8):1073-5.
2008: Wei-Lien Yen; Daniel J Klionsky
How to live long and prosper: autophagy, mitochondria, and aging.
Physiology (Bethesda, Md.) 2008;23():248-62.
2008: Daniel J Klionsky; Zvulun Elazar; Per O Seglen; David C Rubinsztein
Does bafilomycin A1 block the fusion of autophagosomes with lysosomes?
Autophagy 2008;4(7):849-950.
2008: Jiefei Geng; Daniel J Klionsky
Quantitative regulation of vesicle formation in yeast nonspecific autophagy.
Autophagy 2008;4(7):955-7.
2008: Zhiping Xie; Usha Nair; Daniel J Klionsky
Dissecting autophagosome formation: the missing pieces.
Autophagy 2008;4(7):920-2.
2008: Iryna Monastyrska; Fulvio Reggiori; Daniel J Klionsky
Harpooning the Cvt complex to the phagophore assembly site.
Autophagy 2008;4(7):914-6.
2008: Jiefei Geng; Daniel J Klionsky
The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. 'Protein modifications: beyond the usual suspects' review series.
EMBO reports 2008;9(9):859-64.
2008: Yang Cao; Heesun Cheong; Hui Song; Daniel J Klionsky
In vivo reconstitution of autophagy in Saccharomyces cerevisiae.
The Journal of cell biology 2008;182(4):703-13.
2008: Daniel J Klionsky
Autophagy revisited: a conversation with Christian de Duve.
Autophagy 2008;4(6):740-3.
2008: Zhiping Xie; Usha Nair; Daniel J Klionsky
Atg8 controls phagophore expansion during autophagosome formation.
Molecular biology of the cell 2008;19(8):3290-8.
2008: Jiefei Geng; M Baba; Usha Nair; Daniel J Klionsky
Quantitative analysis of autophagy-related protein stoichiometry by fluorescence microscopy.
The Journal of cell biology 2008;182(1):129-40.
2008: Daniel J Klionsky
How we do business (or, Why does it take other journals so long to review your paper?).
Autophagy 2008;4(5):551-4.
2008: Hessun Cheong; Daniel J Klionsky
Dual role of Atg1 in regulation of autophagy-specific PAS assembly in Saccharomyces cerevisiae.
Autophagy 2008;4(5):724-6.
2008: Vojo Deretic; Daniel J Klionsky
How cells clean house.
Scientific American 2008;298(5):74-81.
2008: Iryna Monastyrska; Congcong He; Jiefei Geng; Adam D Hoppe; Zhijian Li; Daniel J Klionsky
Arp2 links autophagic machinery with the actin cytoskeleton.
Molecular biology of the cell 2008;19(5):1962-75.
2008: Noboru Mizushima; Beth Levine; Ana Maria Cuervo; Daniel J Klionsky
Autophagy fights disease through cellular self-digestion.
Nature 2008;451(7182):1069-75.
2008: Daniel J Klionsky; Hagai Abeliovich; Patrizia Agostinis; Devendra K Agrawal; Gjumrakch Aliev; David S Askew; Misuzu Baba; Eric H Baehrecke; Ben A Bahr; Andrea Ballabio; Bruce A Bamber; Diane C Bassham; Ettore Bergamini; Xiaoning Bi; Martine Biard-Piechaczyk; Janice S Blum; Dale E Bredesen; Jeffrey L Brodsky; John H Brumell; Ulf T Brunk; Wilfried Bursch; Nadine Camougrand; Eduardo Cebollero; Francesco Cecconi; Yingyu Chen; Lih-Shen Chin; Augustine Choi; Charleen T Chu; Jongkyeong Chung; Peter G H Clarke; Robert S B Clark; Steven G Clarke; Corinne Clavé; John L Cleveland; Patrice Codogno; María I Colombo; Ana Coto-Montes; James M Cregg; Ana Maria Cuervo; Jayanta Debnath; Francesca Demarchi; Patrick B Dennis; Phillip A Dennis; Vojo Deretic; Rodney J Devenish; Federica Di Sano; J Fred Dice; Marian DiFiglia; Savithramma Dinesh-Kumar; Clark W Distelhorst; Mojgan Djavaheri-Mergny; Frank C Dorsey; Wulf Dröge; Michel Dron; William A Dunn; Michael Duszenko; N Tony Eissa; Zvulun Elazar; Audrey Esclatine; Eeva-Liisa Eskelinen; László Fésüs; Kim D Finley; Jose M. Fuentes; Juan Fueyo; Kozo Fujisaki; Brigitte Galliot; Fen-Biao Gao; David Gewirtz; Spencer B Gibson; Antje Gohla; Alfred L Goldberg; Ramon Gonzalez; Cristina González-Estévez; Sharon Gorski; Roberta Anne Gottlieb; Dieter Häussinger; You-Wen He; Kim Heidenreich; Joseph A Hill; Maria Høyer-Hansen; Xun Hu; Wei-Pang Huang; Akiko Iwasaki; Marja Jäättelä; William T Jackson; Xuejun Jiang; Shengkan Jin; Terje Johansen; Jae U. Jung; Motoni Kadowaki; Chanhee Kang; Ameeta Kelekar; David Kessel; Jan A K W Kiel; hong pyo kim; Adi Kimchi; Timothy J Kinsella; Kirill Kiselyov; Katsuhiko Kitamoto; Erwin Knecht; Masaaki Komatsu; Eiki Kominami; Seiji Kondo; Attila L Kovács; Guido Kroemer; Chia-Yi Kuan; Rakesh Kumar; Mondira Kundu; Jacques Landry; Marianne Laporte; Weidong Le; Huan-Yao Lei; Michael J Lenardo; Beth Levine; Andrew P Lieberman; Kah-Leong Lim; Fu-Cheng Lin; Willisa Liou; Leroy F Liu; Gabriel Lopez-Berestein; Carlos López-Otín; Bo Lu; Kay F Macleod; Walter Malorni; Wim Martinet; Ken Matsuoka; Josef Mautner; Alfred J Meijer; Alicia Meléndez; Paul Michels; Giovanni Miotto; wilhelm mistiaen; Noboru Mizushima; Baharia Mograbi; Iryna Monastyrska; Michael N Moore; Paula I Moreira; Yuji Moriyasu; Tomasz Motyl; Christian Münz; Leon O Murphy; Naweed I Naqvi; Thomas P Neufeld; Ichizo Nishino; Ralph A. Nixon; takeshi noda; Bernd Nürnberg; Michinaga Ogawa; Nancy L Oleinick; Laura J Olsen; Bulent Ozpolat; Shoshana Paglin; Glen E Palmer; Issidora Papassideri; Miles Parkes; David H Perlmutter; George Perry; Mauro Piacentini; Ronit Pinkas-Kramarski; Mark Prescott; Tassula Proikas-Cezanne; Nina Raben; Abdelhaq Rami; Fulvio Reggiori; Bärbel Rohrer; David C Rubinsztein; Kevin M Ryan; Junichi Sadoshima; Hiroshi Sakagami; Yasuyoshi Sakai; Marco Sandri; Chihiro Sasakawa; Miklós Sass; Claudio Schneider; Per O Seglen; Oleksandr Seleverstov; Jeffrey Settleman; John J Shacka; Irving M Shapiro; Andrei Sibirny; Elaine C M Silva-Zacarin; Hans-Uwe Simon; Cristiano Simone; Anne Simonsen; Mark A. Smith; Katharina Spanel-Borowski; Vickram Srinivas; Meredith Steeves; Harald Stenmark; Per E Stromhaug; Carlos S Subauste; Seiichiro Sugimoto; David Sulzer; Toshihiko Suzuki; Michele S Swanson; Ira Tabas; Fumihiko Takeshita; Nicholas J Talbot; Zsolt Tallóczy; Keiji Tanaka; Kozo Tanaka; Isei Tanida; Graham S Taylor; J. Paul Taylor; Alexei Terman; Gianluca Tettamanti; Craig Thompson; Michael Thumm; Aviva M Tolkovsky; Sharon A Tooze; Ray Truant; Lesya V Tumanovska; Yasuo Uchiyama; Takashi Ueno; Néstor L Uzcátegui; Ida van der Klei; Eva C Vaquero; Tibor Vellai; Michael W Vogel; Hong-Gang Wang; Paul Webster; John W Wiley; Zhijun Xi; Gutian Xiao; Joachim Yahalom; Jin-Ming Yang; George Yap; Xiao-Ming Yin; Tamotsu Yoshimori; Li Yu; Zhenyu Yue; Michisuke Yuzaki; Olga Zabirnyk; Xiaoxiang Zheng; Xiongwei Zhu; Russell L Deter
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.
Autophagy 2008;4(2):151-75.
2008: Daniel J Klionsky
Getting into the flow.
Autophagy 2008;4(2):139-40.
2008: Heesun Cheong; Usha Nair; Jiefei Geng; Daniel J Klionsky
The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae.
Molecular biology of the cell 2008;19(2):668-81.
2008: takeshi noda; Daniel J Klionsky
The quantitative Pho8Delta60 assay of nonspecific autophagy.
Methods in enzymology 2008;451():33-42.
2008: Heesun Cheong; Daniel J Klionsky
Biochemical methods to monitor autophagy-related processes in yeast.
Methods in enzymology 2008;451():1-26.
2008: Daniel J Klionsky
The quiz factor.
CBE life sciences education 2008;7(3):265-6.
2008: Julie E Legakis; Daniel J Klionsky
Analysis of autophagosome membrane cycling by fluorescence microscopy.
Methods in molecular biology (Clifton, N.J.) 2008;445():135-45.
2007: Daniel J Klionsky
Autophagy: from phenomenology to molecular understanding in less than a decade.
Nature reviews. Molecular cell biology 2007;8(11):931-7.
2007: Zhiping Xie; Daniel J Klionsky
Autophagosome formation: core machinery and adaptations.
Nature cell biology 2007;9(10):1102-9.
2007: Yang Cao; Daniel J Klionsky
Physiological functions of Atg6/Beclin 1: a unique autophagy-related protein.
Cell research 2007;17(10):839-49.
2007: Tomohiro Yorimitsu; Shadia Zaman; James R Broach; Daniel J Klionsky
Protein kinase A and Sch9 cooperatively regulate induction of autophagy in Saccharomyces cerevisiae.
Molecular biology of the cell 2007;18(10):4180-9.
2007: Daniel J Klionsky; Ana Maria Cuervo; William A Dunn; Beth Levine; Ida Van der klei; Per O Seglen
How shall I eat thee?
Autophagy 2007;3(5):413-6.
2007: Dalibor Mijaljica; Mark Prescott; Daniel J Klionsky; Rodney J Devenish
Autophagy and vacuole homeostasis: a case for self-degradation?
Autophagy 2007;3(5):417-21.
2007: Julie E Legakis; Wei-Lien Yen; Daniel J Klionsky
A cycling protein complex required for selective autophagy.
Autophagy 2007;3(5):422-32.
2007: Ju Huang; Daniel J Klionsky
Autophagy and human disease.
Cell cycle (Georgetown, Tex.) 2007;6(15):1837-49.
2007: Ju Huang; Fulvio Reggiori; Daniel J Klionsky
The transmembrane domain of acid trehalase mediates ubiquitin-independent multivesicular body pathway sorting.
Molecular biology of the cell 2007;18(7):2511-24.
2007: Tomohiro Yorimitsu; Daniel J Klionsky
Eating the endoplasmic reticulum: quality control by autophagy.
Trends in cell biology 2007;17(6):279-85.
2007: Congcong He; Daniel J Klionsky
Atg9 trafficking in autophagy-related pathways.
Autophagy 2007;3(3):271-4.
2007: Wei-Lien Yen; Daniel J Klionsky
Atg27 is a second transmembrane cycling protein.
Autophagy 2007;3(3):254-6.
2007: Daniel J Klionsky; Ana Maria Cuervo; Per O Seglen
Methods for monitoring autophagy from yeast to human.
Autophagy 2007;3(3):181-206.
2007: David C Rubinsztein; Jason E Gestwicki; Leon O Murphy; Daniel J Klionsky
Potential therapeutic applications of autophagy.
Nature reviews. Drug discovery 2007;6(4):304-12.
2007: Tomohiro Yorimitsu; Daniel J Klionsky
Endoplasmic reticulum stress: a new pathway to induce autophagy.
Autophagy 2007;3(2):160-2.
2007: Zhifen Yang; Daniel J Klionsky
Permeases recycle amino acids resulting from autophagy.
Autophagy 2007;3(2):149-50.
2007: Daniel J Klionsky
The importance of diversity.
Autophagy 2007;3(2):83-4.
2007: Ruth Tal; Gal Winter; Nitai Ecker; Daniel J Klionsky; Hagai Abeliovich
Aup1p, a yeast mitochondrial protein phosphatase homolog, is required for efficient stationary phase mitophagy and cell survival.
The Journal of biological chemistry 2007;282(8):5617-24.
2007: Wei-Lien Yen; Julie E Legakis; Usha Nair; Daniel J Klionsky
Atg27 is required for autophagy-dependent cycling of Atg9.
Molecular biology of the cell 2007;18(2):581-93.
2007: Daniel J Klionsky
Monitoring autophagy in yeast: the Pho8Delta60 assay.
Methods in molecular biology (Clifton, N.J.) 2007;390():363-71.
2007: Noboru Mizushima; Daniel J Klionsky
Protein turnover via autophagy: implications for metabolism.
Annual review of nutrition 2007;27():19-40.
2007: Yang Cao; Daniel J Klionsky
Atg26 is not involved in autophagy-related pathways in Saccharomyces cerevisiae.
Autophagy 2007;3(1):17-20.
2006: Congcong He; Hui Song; Tomohiro Yorimitsu; Iryna Monastyrska; Wei-Lien Yen; Julie E Legakis; Daniel J Klionsky
Recruitment of Atg9 to the preautophagosomal structure by Atg11 is essential for selective autophagy in budding yeast.
The Journal of cell biology 2006;175(6):925-35.
2006: Zhifen Yang; Ju Huang; Jiefei Geng; Usha Nair; Daniel J Klionsky
Atg22 recycles amino acids to link the degradative and recycling functions of autophagy.
Molecular biology of the cell 2006;17(12):5094-104.
2006: Tomohiro Yorimitsu; Usha Nair; Zhifen Yang; Daniel J Klionsky
Endoplasmic reticulum stress triggers autophagy.
The Journal of biological chemistry 2006;281(40):30299-304.
2006: Iryna Monastyrska; Daniel J Klionsky
Autophagy in organelle homeostasis: peroxisome turnover.
Molecular aspects of medicine 2006;27(5-6):483-94.
2006: Daniel J Klionsky
Let's not forget about non-specific autophagy.
Autophagy 2006;2(4):257.
2006: Fulvio Reggiori; Daniel J Klionsky
Atg9 sorting from mitochondria is impaired in early secretion and VFT-complex mutants in Saccharomyces cerevisiae.
Journal of cell science 2006;119(Pt 14):2903-11.
2006: Daniel J Klionsky
Neurodegeneration: good riddance to bad rubbish.
Nature 2006;441(7095):819-20.
2006: Congcong He; Daniel J Klionsky
Autophagy and neurodegeneration.
ACS chemical biology 2006;1(4):211-3.
2006: Iryna Monastyrska; Takahiro Shintani; Daniel J Klionsky; Fulvio Reggiori
Atg11 directs autophagosome cargoes to the PAS along actin cables.
Autophagy 2006;2(2):119-21.
2006: Daniel J Klionsky
What can we learn from trypanosomes?
Autophagy 2006;2(2):63-4.
2006: Daniel J Klionsky; Anuj Kumar
A systems biology approach to learning autophagy.
Autophagy 2006;2(1):12-23.
2005: Usha Nair; Daniel J Klionsky
Molecular mechanisms and regulation of specific and nonspecific autophagy pathways in yeast.
The Journal of biological chemistry 2005;280(51):41785-8.
2005: Fulvio Reggiori; Iryna Monastyrska; Takahiro Shintani; Daniel J Klionsky
The actin cytoskeleton is required for selective types of autophagy, but not nonspecific autophagy, in the yeast Saccharomyces cerevisiae.
Molecular biology of the cell 2005;16(12):5843-56.
2005: Tomohiro Yorimitsu; Daniel J Klionsky
Autophagy: molecular machinery for self-eating.
Cell death and differentiation 2005;12 Suppl 2():1542-52.
2005: Roberto Towns; Yukiko Kabeya; Tamotsu Yoshimori; Chunfang Guo; Yu Shangguan; Shuangsong Hong; Mariana J Kaplan; Daniel J Klionsky; John W Wiley
Sera from patients with type 2 diabetes and neuropathy induce autophagy and colocalization with mitochondria in SY5Y cells.
Autophagy 2005;1(3):163-70.
2005: Fulvio Reggiori; Daniel J Klionsky
Autophagosomes: biogenesis from scratch?
Current opinion in cell biology 2005;17(4):415-22.
2005: Fulvio Reggiori; Takahiro Shintani; Usha Nair; Daniel J Klionsky
Atg9 cycles between mitochondria and the pre-autophagosomal structure in yeasts.
Autophagy 2005;1(2):101-9.
2005: Daniel J Klionsky
The correct way to monitor autophagy in higher eukaryotes.
Autophagy 2005;1(2):65.
2005: Heesun Cheong; Tomohiro Yorimitsu; Fulvio Reggiori; Julie E Legakis; Chao-Wen Wang; Daniel J Klionsky
Atg17 regulates the magnitude of the autophagic response.
Molecular biology of the cell 2005;16(7):3438-53.
2005: Daniel J Klionsky
Autophagy.
Current biology : CB 2005;15(8):R282-3.
2005: Taras Y Nazarko; Ju Huang; Jean-Marc Nicaud; Daniel J Klionsky; Andriy A Sibirny
Trs85 is required for macroautophagy, pexophagy and cytoplasm to vacuole targeting in Yarrowia lipolytica and Saccharomyces cerevisiae.
Autophagy 2005;1(1):37-45.
2005: Daniel J Klionsky; Alfred J Meijer; Patrice Codogno
Autophagy and p70S6 kinase.
Autophagy 2005;1(1):59-60; discussion 60-1.
2005: Tomohiro Yorimitsu; Daniel J Klionsky
Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway.
Molecular biology of the cell 2005;16(4):1593-605.
2005: Daniel J Klionsky
The molecular machinery of autophagy: unanswered questions.
Journal of cell science 2005;118(Pt 1):7-18.
2004: Takahiro Shintani; Daniel J Klionsky
Autophagy in health and disease: a double-edged sword.
Science (New York, N.Y.) 2004;306(5698):990-5.
2004: Daniel J Klionsky
Cell biology: regulated self-cannibalism.
Nature 2004;431(7004):31-2.
2004: Per E Strømhaug; Fulvio Reggiori; Ju Guan; Chao-Wen Wang; Daniel J Klionsky
Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy.
Molecular biology of the cell 2004;15(8):3553-66.
2004: Takahiro Shintani; Daniel J Klionsky
Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway.
The Journal of biological chemistry 2004;279(29):29889-94.
2004: Yelena V Budovskaya; Joseph S Stephan; Fulvio Reggiori; Daniel J Klionsky; Paul K Herman
The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae.
The Journal of biological chemistry 2004;279(20):20663-71.
2004: Fulvio Reggiori; Chao-Wen Wang; Usha Nair; Takahiro Shintani; Hagai Abeliovich; Daniel J Klionsky
Early stages of the secretory pathway, but not endosomes, are required for Cvt vesicle and autophagosome assembly in Saccharomyces cerevisiae.
Molecular biology of the cell 2004;15(5):2189-204.
2004: Beth Levine; Daniel J Klionsky
Development by self-digestion: molecular mechanisms and biological functions of autophagy.
Developmental cell 2004;6(4):463-77.
2004: Harvey Lodish; Roberto K Rodriguez; Daniel J Klionsky
Points of view: lectures: can't learn with them, can't learn without them.
Cell biology education 2004;3(4):202-11.
2004: Fulvio Reggiori; Katherine A Tucker; Per E Stromhaug; Daniel J Klionsky
The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure.
Developmental cell 2004;6(1):79-90.
2003: Chao-Wen Wang; Per E Stromhaug; Emily J Kauffman; Lois S Weisman; Daniel J Klionsky
Yeast homotypic vacuole fusion requires the Ccz1-Mon1 complex during the tethering/docking stage.
The Journal of cell biology 2003;163(5):973-85.
2003: Katherine A Tucker; Fulvio Reggiori; William A Dunn; Daniel J Klionsky
Atg23 is essential for the cytoplasm to vacuole targeting pathway and efficient autophagy but not pexophagy.
The Journal of biological chemistry 2003;278(48):48445-52.
2003: Daniel J Klionsky; James M Cregg; William A Dunn; Scott D Emr; Yasuyoshi Sakai; Ignacio V Sandoval; Andriy A Sibirny; Suresh Subramani; Michael Thumm; Marten Veenhuis; Yoshinori Ohsumi
A unified nomenclature for yeast autophagy-related genes.
Developmental cell 2003;5(4):539-45.
2003: Chao-Wen Wang; Daniel J Klionsky
The molecular mechanism of autophagy.
Molecular medicine (Cambridge, Mass.) 2003;9(3-4):65-76.
2003: Fulvio Reggiori; Chao-Wen Wang; Per E Stromhaug; Takahiro Shintani; Daniel J Klionsky
Vps51 is part of the yeast Vps fifty-three tethering complex essential for retrograde traffic from the early endosome and Cvt vesicle completion.
The Journal of biological chemistry 2003;278(7):5009-20.
2003: Hagai Abeliovich; Chao Zhang; William A Dunn; Kevan M Shokat; Daniel J Klionsky
Chemical genetic analysis of Apg1 reveals a non-kinase role in the induction of autophagy.
Molecular biology of the cell 2003;14(2):477-90.
2002: Chao-Wen Wang; Per E Stromhaug; Jun Shima; Daniel J Klionsky
The Ccz1-Mon1 protein complex is required for the late step of multiple vacuole delivery pathways.
The Journal of biological chemistry 2002;277(49):47917-27.
2002: Wei-Pang Huang; Daniel J Klionsky
Autophagy in yeast: a review of the molecular machinery.
Cell structure and function 2002;27(6):409-20.
2002: Takahiro Shintani; Wei-Pang Huang; Per E Stromhaug; Daniel J Klionsky
Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway.
Developmental cell 2002;3(6):825-37.
2002: Daniel C Nice; Trey K Sato; Per E Stromhaug; Scott D Emr; Daniel J Klionsky
Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy.
The Journal of biological chemistry 2002;277(33):30198-207.
2002: Waheeda A Khalfan; Daniel J Klionsky
Molecular machinery required for autophagy and the cytoplasm to vacuole targeting (Cvt) pathway in S. cerevisiae.
Current opinion in cell biology 2002;14(4):468-75.
2002: Fulvio Reggiori; Daniel J Klionsky
Autophagy in the eukaryotic cell.
Eukaryotic cell 2002;1(1):11-21.
2002: John Kim; Wei-Pang Huang; Per E Stromhaug; Daniel J Klionsky
Convergence of multiple autophagy and cytoplasm to vacuole targeting components to a perivacuolar membrane compartment prior to de novo vesicle formation.
The Journal of biological chemistry 2002;277(1):763-73.
2001: Ju Guan; Per E Stromhaug; Michael D George; P Habibzadegah-Tari; A Bevan; William A Dunn; Daniel J Klionsky
Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris.
Molecular biology of the cell 2001;12(12):3821-38.
2001: Hagai Abeliovich; Daniel J Klionsky
Autophagy in yeast: mechanistic insights and physiological function.
Microbiology and molecular biology reviews : MMBR 2001;65(3):463-79, table of contents.
2001: Chao-Wen Wang; John Kim; Wei-Pang Huang; Hagai Abeliovich; Per E Stromhaug; William A Dunn; Daniel J Klionsky
Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways.
The Journal of biological chemistry 2001;276(32):30442-51.
2001: Per E Stromhaug; Daniel J Klionsky
Approaching the molecular mechanism of autophagy.
Traffic (Copenhagen, Denmark) 2001;2(8):524-31.
2001: Maria Hutchins; Daniel J Klionsky
Vacuolar localization of oligomeric alpha-mannosidase requires the cytoplasm to vacuole targeting and autophagy pathway components in Saccharomyces cerevisiae.
The Journal of biological chemistry 2001;276(23):20491-8.
2001: Sidney V Scott; Ju Guan; Maria Hutchins; John Kim; Daniel J Klionsky
Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.
Molecular cell 2001;7(6):1131-41.
2001: John Kim; Yasuhiko Kamada; Per E Stromhaug; Ju Guan; A Hefner-Gravink; M Baba; Sidney V Scott; Yoshinori Ohsumi; William A Dunn; Daniel J Klionsky
Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole.
The Journal of cell biology 2001;153(2):381-96.
2001: SA Teter; K P Eggerton; Sidney V Scott; John Kim; A M Fischer; Daniel J Klionsky
Degradation of lipid vesicles in the yeast vacuole requires function of Cvt17, a putative lipase.
The Journal of biological chemistry 2001;276(3):2083-7.
2001: John Kim; Wei-Pang Huang; Daniel J Klionsky
Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex.
The Journal of cell biology 2001;152(1):51-64.
2000: Daniel J Klionsky; Scott D Emr
Autophagy as a regulated pathway of cellular degradation.
Science (New York, N.Y.) 2000;290(5497):1717-21.
2000: Hagai Abeliovich; William A Dunn; John Kim; Daniel J Klionsky
Dissection of autophagosome biogenesis into distinct nucleation and expansion steps.
The Journal of cell biology 2000;151(5):1025-34.
2000: Sidney V Scott; D C Nice; J J Nau; Lois S Weisman; Yasuhiko Kamada; I Keizer-Gunnink; T Funakoshi; M Veenhuis; Yoshinori Ohsumi; Daniel J Klionsky
Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting.
The Journal of biological chemistry 2000;275(33):25840-9.
2000: SA Teter; Daniel J Klionsky
Transport of proteins to the yeast vacuole: autophagy, cytoplasm-to-vacuole targeting, and role of the vacuole in degradation.
Seminars in cell & developmental biology 2000;11(3):173-9.
2000: Michael D George; M Baba; Sidney V Scott; Noboru Mizushima; B S Garrison; Yoshinori Ohsumi; Daniel J Klionsky
Apg5p functions in the sequestration step in the cytoplasm-to-vacuole targeting and macroautophagy pathways.
Molecular biology of the cell 2000;11(3):969-82.
2000: W P Huang; Sidney V Scott; John Kim; Daniel J Klionsky
The itinerary of a vesicle component, Aut7p/Cvt5p, terminates in the yeast vacuole via the autophagy/Cvt pathways.
The Journal of biological chemistry 2000;275(8):5845-51.
2000: takeshi noda; John Kim; W P Huang; M Baba; C Tokunaga; Yoshinori Ohsumi; Daniel J Klionsky
Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways.
The Journal of cell biology 2000;148(3):465-80.
2000: John Kim; Daniel J Klionsky
Autophagy, cytoplasm-to-vacuole targeting pathway, and pexophagy in yeast and mammalian cells.
Annual review of biochemistry 2000;69():303-42.
2000: John Kim; Sidney V Scott; Daniel J Klionsky
Alternative protein sorting pathways.
International review of cytology 2000;198():153-201.
1999: Maria Hutchins; M Veenhuis; Daniel J Klionsky
Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway.
Journal of cell science 1999;112 ( Pt 22)():4079-87.
1999: SA Teter; Daniel J Klionsky
How to get a folded protein across a membrane.
Trends in cell biology 1999;9(11):428-31.
1999: John Kim; V M Dalton; K P Eggerton; Sidney V Scott; Daniel J Klionsky
Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways.
Molecular biology of the cell 1999;10(5):1337-51.
1999: Daniel J Klionsky; Yoshinori Ohsumi
Vacuolar import of proteins and organelles from the cytoplasm.
Annual review of cell and developmental biology 1999;15():1-32.
1998: D Fleckenstein; M Rohde; Daniel J Klionsky; M Rüdiger
Yel013p (Vac8p), an armadillo repeat protein related to plakoglobin and importin alpha is associated with the yeast vacuole membrane.
Journal of cell science 1998;111 ( Pt 20)():3109-18.
1998: Noboru Mizushima; takeshi noda; Tamotsu Yoshimori; Y Tanaka; T Ishii; Michael D George; Daniel J Klionsky; Mariko Ohsumi; Yoshinori Ohsumi
A protein conjugation system essential for autophagy.
Nature 1998;395(6700):395-8.
1998: Sidney V Scott; Daniel J Klionsky
Delivery of proteins and organelles to the vacuole from the cytoplasm.
Current opinion in cell biology 1998;10(4):523-9.
1998: Daniel J Klionsky
Nonclassical protein sorting to the yeast vacuole.
The Journal of biological chemistry 1998;273(18):10807-10.
1997: M Baba; M Osumi; Sidney V Scott; Daniel J Klionsky; Yoshinori Ohsumi
Two distinct pathways for targeting proteins from the cytoplasm to the vacuole/lysosome.
The Journal of cell biology 1997;139(7):1687-95.
1997: J J Tomashek; Laurie A Graham; Maria Hutchins; Tom H Stevens; Daniel J Klionsky
V1-situated stalk subunits of the yeast vacuolar proton-translocating ATPase.
The Journal of biological chemistry 1997;272(42):26787-93.
1997: S Matoba; Kevin A Morano; Daniel J Klionsky; K Kim; DM Ogrydziak
Dipeptidyl aminopeptidase processing and biosynthesis of alkaline extracellular protease from Yarrowia lipolytica.
Microbiology (Reading, England) 1997;143 ( Pt 10)():3263-72.
1997: Sidney V Scott; M Baba; Yoshinori Ohsumi; Daniel J Klionsky
Aminopeptidase I is targeted to the vacuole by a nonclassical vesicular mechanism.
The Journal of cell biology 1997;138(1):37-44.
1997: J J Tomashek; B S Garrison; Daniel J Klionsky
Reconstitution in vitro of the V1 complex from the yeast vacuolar proton-translocating ATPase. Assembly recapitulates mechanism.
The Journal of biological chemistry 1997;272(26):16618-23.
1997: Daniel J Klionsky
Nonclassical protein sorting.
Trends in cell biology 1997;7(6):225-9.
1997: Daniel J Klionsky
Protein transport from the cytoplasm into the vacuole.
The Journal of membrane biology 1997;157(2):105-15.
1997: John Kim; Sidney V Scott; M N Oda; Daniel J Klionsky
Transport of a large oligomeric protein by the cytoplasm to vacuole protein targeting pathway.
The Journal of cell biology 1997;137(3):609-18.
1996: Nathan Nelson; Daniel J Klionsky
Vacuolar H(+)-ATPase: from mammals to yeast and back.
Experientia 1996;52(12):1101-10.
1996: Sidney V Scott; A Hefner-Gravink; Kevin A Morano; takeshi noda; Y Ohsumi; Daniel J Klionsky
Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(22):12304-8.
1996: Y X Wang; H Zhao; T M Harding; D S Gomes de Mesquita; Conrad L Woldringh; Daniel J Klionsky; A L Munn; Lois S Weisman
Multiple classes of yeast mutants are defective in vacuole partitioning yet target vacuole proteins correctly.
Molecular biology of the cell 1996;7(9):1375-89.
1996: P Alizadeh; Daniel J Klionsky
Purification and biochemical characterization of the ATH1 gene product, vacuolar acid trehalase, from Saccharomyces cerevisiae.
FEBS letters 1996;391(3):273-8.
1996: T M Harding; A Hefner-Gravink; M Thumm; Daniel J Klionsky
Genetic and phenotypic overlap between autophagy and the cytoplasm to vacuole protein targeting pathway.
The Journal of biological chemistry 1996;271(30):17621-4.
1996: J Kim; P Alizadeh; T Harding; A Hefner-Gravink; Daniel J Klionsky
Disruption of the yeast ATH1 gene confers better survival after dehydration, freezing, and ethanol shock: potential commercial applications.
Applied and environmental microbiology 1996;62(5):1563-9.
1996: J J Tomashek; J L Sonnenburg; J M Artimovich; Daniel J Klionsky
Resolution of subunit interactions and cytoplasmic subcomplexes of the yeast vacuolar proton-translocating ATPase.
The Journal of biological chemistry 1996;271(17):10397-404.
1996: M N Oda; Sidney V Scott; A Hefner-Gravink; A D Caffarelli; Daniel J Klionsky
Identification of a cytoplasm to vacuole targeting determinant in aminopeptidase I.
The Journal of cell biology 1996;132(6):999-1010.
1995: Sidney V Scott; Daniel J Klionsky
In vitro reconstitution of cytoplasm to vacuole protein targeting in yeast.
The Journal of cell biology 1995;131(6 Pt 2):1727-35.
1995: T M Harding; Kevin A Morano; Sidney V Scott; Daniel J Klionsky
Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway.
The Journal of cell biology 1995;131(3):591-602.
1995: M Destruelle; H Holzer; Daniel J Klionsky
Isolation and characterization of a novel yeast gene, ATH1, that is required for vacuolar acid trehalase activity.
Yeast (Chichester, England) 1995;11(11):1015-25.
1994: Kevin A Morano; Daniel J Klionsky
Differential effects of compartment deacidification on the targeting of membrane and soluble proteins to the vacuole in yeast.
Journal of cell science 1994;107 ( Pt 10)():2813-24.
1994: M Destruelle; H Holzer; Daniel J Klionsky
Identification and characterization of a novel yeast gene: the YGP1 gene product is a highly glycosylated secreted protein that is synthesized in response to nutrient limitation.
Molecular and cellular biology 1994;14(4):2740-54.
1993: DS Yaver; H Nelson; N Nelson; Daniel J Klionsky
Vacuolar ATPase mutants accumulate precursor proteins in a pre-vacuolar compartment.
The Journal of biological chemistry 1993;268(14):10564-72.
1992: Daniel J Klionsky; H Nelson; N Nelson; DS Yaver
Mutations in the yeast vacuolar ATPase result in the mislocalization of vacuolar proteins.
The Journal of experimental biology 1992;172():83-92.
1992: Daniel J Klionsky; R Cueva; DS Yaver
Aminopeptidase I of Saccharomyces cerevisiae is localized to the vacuole independent of the secretory pathway.
The Journal of cell biology 1992;119(2):287-99.
1992: Daniel J Klionsky; H Nelson; N Nelson
Compartment acidification is required for efficient sorting of proteins to the vacuole in Saccharomyces cerevisiae.
The Journal of biological chemistry 1992;267(5):3416-22.
1990: Daniel J Klionsky; P K Herman; Scott D Emr
The fungal vacuole: composition, function, and biogenesis.
Microbiological reviews 1990;54(3):266-92.
1990: Daniel J Klionsky; Scott D Emr
A new class of lysosomal/vacuolar protein sorting signals.
The Journal of biological chemistry 1990;265(10):5349-52.
1989: Daniel J Klionsky; Scott D Emr
Membrane protein sorting: biosynthesis, transport and processing of yeast vacuolar alkaline phosphatase.
The EMBO journal 1989;8(8):2241-50.
1988: J S Robinson; Daniel J Klionsky; L M Banta; Scott D Emr
Protein sorting in Saccharomyces cerevisiae: isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases.
Molecular and cellular biology 1988;8(11):4936-48.
1988: L M Banta; J S Robinson; Daniel J Klionsky; Scott D Emr
Organelle assembly in yeast: characterization of yeast mutants defective in vacuolar biogenesis and protein sorting.
The Journal of cell biology 1988;107(4):1369-83.
1988: Daniel J Klionsky; L M Banta; Scott D Emr
Intracellular sorting and processing of a yeast vacuolar hydrolase: proteinase A propeptide contains vacuolar targeting information.
Molecular and cellular biology 1988;8(5):2105-16.
1987: D M Bedwell; Daniel J Klionsky; Scott D Emr
The yeast F1-ATPase beta subunit precursor contains functionally redundant mitochondrial protein import information.
Molecular and cellular biology 1987;7(11):4038-47.
1986: Daniel J Klionsky; D G Skalnik; Robert D Simoni
Differential translation of the genes encoding the proton-translocating ATPase of Escherichia coli.
The Journal of biological chemistry 1986;261(18):8096-9.
1985: J P Aris; Daniel J Klionsky; Robert D Simoni
The Fo subunits of the Escherichia coli F1Fo-ATP synthase are sufficient to form a functional proton pore.
The Journal of biological chemistry 1985;260(20):11207-15.
1985: Daniel J Klionsky; Robert D Simoni
Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli.
The Journal of biological chemistry 1985;260(20):11200-6.
1984: Daniel J Klionsky; William S A Brusilow; Robert D Simoni
In vivo evidence for the role of the epsilon subunit as an inhibitor of the proton-translocating ATPase of Escherichia coli.
Journal of bacteriology 1984;160(3):1055-60.
1983: Daniel J Klionsky; William S A Brusilow; Robert D Simoni
Assembly of a functional F0 of the proton-translocating ATPase of Escherichia coli.
The Journal of biological chemistry 1983;258(16):10136-43.
1983: R Humbert; William S A Brusilow; R P Gunsalus; Daniel J Klionsky; Robert D Simoni
Escherichia coli mutants defective in the uncH gene.
Journal of bacteriology 1983;153(1):416-22.
1982: William S A Brusilow; Daniel J Klionsky; Robert D Simoni
Differential polypeptide synthesis of the proton-translocating ATPase of Escherichia coli.
Journal of bacteriology 1982;151(3):1363-71.