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Volker Knoop

Research Profile

Physiology

RNA Editing

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Chemicals & Drugs

Genes & Molecular Sequences

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Mitochondrion

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Publications

TOP 3
Henning Lenz; Volker Knoop
PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.
U Volkmar; Milena Groth-Malonek; J Heinrichs; H Muhle; M Polsakiewicz; Volker Knoop
Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade.
Mareike Rüdinger; Ute Volkmar; Milena Groth-Malonek; Henning Lenz; Volker Knoop
Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

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All Publications

2013: Henning Lenz; Volker Knoop
PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.
Bioinformatics and biology insights 2013;7():1-19.
2012: U Volkmar; Milena Groth-Malonek; J Heinrichs; H Muhle; M Polsakiewicz; Volker Knoop
Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade.
Plant biology (Stuttgart, Germany) 2012;14(2):382-91.
2012: Mareike Rüdinger; Ute Volkmar; Milena Groth-Malonek; Henning Lenz; Volker Knoop
Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.
Journal of molecular evolution 2012;74(1-2):37-51.
2011: Mareike Rüdinger; Monika Polsakiewicz; Lillian Fritz-Laylin; Volker Knoop
Plant-type mitochondrial RNA editing in the protist Naegleria gruberi.
RNA (New York, N.Y.) 2011;17(12):2058-62.
2011: Mareike Rüdinger; Péter Szövényi; Stefan A Rensing; Volker Knoop
Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica.
The Plant journal : for cell and molecular biology 2011;67(2):370-80.
2011: Volker Knoop
When you can't trust the DNA: RNA editing changes transcript sequences.
Cellular and molecular life sciences : CMLS 2011;68(4):567-86.
2011: Julia Hecht; Felix Grewe; Volker Knoop
Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes.
Genome biology and evolution 2011;3():344-58.
2010: Volker Knoop; Mareike Rüdinger
DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer?
FEBS letters 2010;584(20):4287-91.
2010: Ute Volkmar; Volker Knoop
Introducing intron locus cox1i624 for phylogenetic analyses in Bryophytes: on the issue of Takakia as sister genus to all other extant mosses.
Journal of molecular evolution 2010;70(5):506-18.
2010: Henning Lenz; Mareike Rüdinger; Ute Volkmar; Simon Fischer; Stefan Herres; Felix Grewe; Volker Knoop
Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature.
Current genetics 2010;56(2):189-201.
2010: Ute Wahrmund; Dietmar Quandt; Volker Knoop
The phylogeny of mosses - addressing open issues with a new mitochondrial locus: group I intron cobi420.
Molecular phylogenetics and evolution 2010;54(2):417-26.
2009: Michael Gebert; Karoline Meschenmoser; Sona Svidová; Julian Weghuber; Rudolf J Schweyen; Karolin Eifler; Henning Lenz; Katrin Weyand; Volker Knoop
A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments.
The Plant cell 2009;21(12):4018-30.
2009: Felix Grewe; Prisca Viehoever; Bernd Weisshaar; Volker Knoop
A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii.
Nucleic acids research 2009;37(15):5093-104.
2009: Mareike Rüdinger; Helena T Funk; Stefan A Rensing; Uwe G Maier; Volker Knoop
RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal.
Molecular genetics and genomics : MGG 2009;281(5):473-81.
2008: Mareike Rüdinger; Monika Polsakiewicz; Volker Knoop
Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts.
Molecular biology and evolution 2008;25(7):1405-14.
2008: Ute Wahrmund; Milena Groth-Malonek; Volker Knoop
Tracing plant Mitochondrial DNA evolution: rearrangements of the ancient mitochondrial gene cluster trnA-trnT-nad7 in liverwort phylogeny.
Journal of molecular evolution 2008;66(6):621-9.
2007: Mahalia A Ahimsa-Müller; Anne Markert; Sabine Hellwig; Volker Knoop; Ulrike Steiner; Christel Drewke; Eckhard Leistner
Clavicipitaceous fungi associated with ergoline alkaloid-containing convolvulaceae.
Journal of natural products 2007;70(12):1955-60.
2007: Véronique Salone; Mareike Rüdinger; Monika Polsakiewicz; Beate Hoffmann; Milena Groth-Malonek; Boris Szurek; Ian Small; Volker Knoop; Claire Lurin
A hypothesis on the identification of the editing enzyme in plant organelles.
FEBS letters 2007;581(22):4132-8.
2007: Milena Groth-Malonek; Ute Wahrmund; Monika Polsakiewicz; Volker Knoop
Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae.
Molecular biology and evolution 2007;24(4):1068-74.
2006: Yin-Long Qiu; Libo Li; Bin Wang; Zhiduan Chen; Volker Knoop; Milena Groth-Malonek; Olena Dombrovska; Jungho Lee; Livija Kent; Joshua Rest; George F Estabrook; Tory A Hendry; David W Taylor; Christopher M Testa; Mathew Ambros; Barbara Crandall-Stotler; R Joel Duff; Michael Stech; Wolfgang Frey; Dietmar Quandt; Charles C Davis
The deepest divergences in land plants inferred from phylogenomic evidence.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(42):15511-6.
2006: Ulrike Steiner; Mahalia A Ahimsa-Müller; Anne Markert; Sabine Kucht; Julia Gross; Nicole Kauf; Monika Kuzma; Monika Zych; Marc Lamshöft; Miroslawa Furmanowa; Volker Knoop; Christel Drewke; Eckhard Leistner
Molecular characterization of a seed transmitted clavicipitaceous fungus occurring on dicotyledoneous plants (Convolvulaceae).
Planta 2006;224(3):533-44.
2005: Volker Knoop; Milena Groth-Malonek; Michael Gebert; Karolin Eifler; Katrin Weyand
Transport of magnesium and other divalent cations: evolution of the 2-TM-GxN proteins in the MIT superfamily.
Molecular genetics and genomics : MGG 2005;274(3):205-16.
2005: Milena Groth-Malonek; Dagmar Pruchner; Felix Grewe; Volker Knoop
Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants.
Molecular biology and evolution 2005;22(1):117-25.
2004: Volker Knoop
The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective.
Current genetics 2004;46(3):123-39.
2002: Dagmar Pruchner; Susanne Beckert; Hermann Muhle; Volker Knoop
Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes.
Journal of molecular evolution 2002;55(3):265-71.
2001: Dagmar Pruchner; B Nassal; M Schindler; Volker Knoop
Mosses share mitochondrial group II introns with flowering plants, not with liverworts.
Molecular genetics and genomics : MGG 2001;266(4):608-13.
2001: Susanne Beckert; H Muhle; Dagmar Pruchner; Volker Knoop
The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses.
Molecular phylogenetics and evolution 2001;18(1):117-26.
2000: I Schock; J Gregan; S Steinhauser; Rudolf J Schweyen; Axel Brennicke; Volker Knoop
A member of a novel Arabidopsis thaliana gene family of candidate Mg2+ ion transporters complements a yeast mitochondrial group II intron-splicing mutant.
The Plant journal : for cell and molecular biology 2000;24(4):489-501.
2000: Marcella Attimonelli; Nicola Altamura; Rob Benne; Axel Brennicke; J Mark Cooper; Domenica D'Elia; A Montalvo; B Pinto; Mariateresa De Robertis; Pawel Golik; Volker Knoop; Cecilia Lanave; Jaga Lazowska; Flavio Licciulli; BS Malladi; F Memeo; M Monnerot; R Pasimeni; S Pilbout; Anthony H V Schapira; P Sloof; Cecilia Saccone
MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status.
Nucleic acids research 2000;28(1):148-52.
1999: Allan G Rasmusson; A Staffan Svensson; Volker Knoop; L Grohmann; Axel Brennicke
Homologues of yeast and bacterial rotenone-insensitive NADH dehydrogenases in higher eukaryotes: two enzymes are present in potato mitochondria.
The Plant journal : for cell and molecular biology 1999;20(1):79-87.
1999: S Steinhauser; Susanne Beckert; I Capesius; O Malek; Volker Knoop
Plant mitochondrial RNA editing.
Journal of molecular evolution 1999;48(3):303-12.
1999: Marcella Attimonelli; Nicola Altamura; Rob Benne; Catherine Boyen; Axel Brennicke; A Carone; J Mark Cooper; Domenica D'Elia; A de Montalvo; Brigida de Pinto; Mariateresa De Robertis; Pawel Golik; Jean-Michel Grienenberger; Volker Knoop; Cecilia Lanave; Jaga Lazowska; A Lemagnen; BS Malladi; F Memeo; M Monnerot; S Pilbout; Anthony H V Schapira; P Sloof; Piotr P Slonimski; Cecilia Saccone
MitBASE: a comprehensive and integrated mitochondrial DNA database.
Nucleic acids research 1999;27(1):128-33.
1998: O Malek; Volker Knoop
Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort.
RNA (New York, N.Y.) 1998;4(12):1599-609.
1998: P Giegé; Volker Knoop; Axel Brennicke
Complex II subunit 4 (sdh4) homologous sequences in plant mitochondrial genomes.
Current genetics 1998;34(4):313-7.
1997: Y Kobayashi; Volker Knoop; Fukuzawa Hideya; Axel Brennicke; K Ohyama
Interorganellar gene transfer in bryophytes: the functional nad7 gene is nuclear encoded in Marchantia polymorpha.
Molecular & general genetics : MGG 1997;256(5):589-92.
1997: Volker Knoop; M Altwasser; Axel Brennicke
A tripartite group II intron in mitochondria of an angiosperm plant.
Molecular & general genetics : MGG 1997;255(3):269-76.
1997: O Malek; Axel Brennicke; Volker Knoop
Evolution of trans-splicing plant mitochondrial introns in pre-Permian times.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(2):553-8.
1997: H Ullrich; K Lättig; Axel Brennicke; Volker Knoop
Mitochondrial DNA variations and nuclear RFLPs reflect different genetic similarities among 23 Arabidopsis thaliana ecotypes.
Plant molecular biology 1997;33(1):37-45.
1996: O Malek; K Lättig; R Hiesel; Axel Brennicke; Volker Knoop
RNA editing in bryophytes and a molecular phylogeny of land plants.
The EMBO journal 1996;15(6):1403-11.
1996: Volker Knoop; M Unseld; J Marienfeld; P Brandt; S Sünkel; H Ullrich; Axel Brennicke
copia-, gypsy- and LINE-like retrotransposon fragments in the mitochondrial genome of Arabidopsis thaliana.
Genetics 1996;142(2):579-85.
1995: Volker Knoop; Thomas Ehrhardt; K Lättig; Axel Brennicke
The gene for ribosomal protein S10 is present in mitochondria of pea and potato but absent from those of Arabidopsis and Oenothera.
Current genetics 1995;27(6):559-64.
1994: Volker Knoop; S Kloska; Axel Brennicke
On the identification of group II introns in nucleotide sequence data.
Journal of molecular biology 1994;242(4):389-96.
1994: Volker Knoop; Axel Brennicke
Promiscuous mitochondrial group II intron sequences in plant nuclear genomes.
Journal of molecular evolution 1994;39(2):144-50.
1994: Volker Knoop; Axel Brennicke
Evidence for a group II intron in Escherichia coli inserted into a highly conserved reading frame associated with mobile DNA sequences.
Nucleic acids research 1994;22(7):1167-71.
1994: S Sünkel; Axel Brennicke; Volker Knoop
RNA editing of a conserved reading frame in plant mitochondria increases its similarity to two overlapping reading frames in Escherichia coli.
Molecular & general genetics : MGG 1994;242(1):65-72.
1993: Axel Brennicke; L Grohmann; R Hiesel; Volker Knoop; W Schuster
The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants.
FEBS letters 1993;325(1-2):140-5.
1992: P Brandt; S Sünkel; M Unseld; Axel Brennicke; Volker Knoop
The nad4L gene is encoded between exon c of nad5 and orf25 in the Arabidopsis mitochondrial genome.
Molecular & general genetics : MGG 1992;236(1):33-8.
1991: Volker Knoop; W Schuster; B Wissinger; Axel Brennicke
Trans splicing integrates an exon of 22 nucleotides into the nad5 mRNA in higher plant mitochondria.
The EMBO journal 1991;10(11):3483-93.
1991: Volker Knoop; Axel Brennicke
A mitochondrial intron sequence in the 5'-flanking region of a plant nuclear lectin gene.
Current genetics 1991;20(5):423-5.
1991: W Schuster; R Ternes; Volker Knoop; R Hiesel; B Wissinger; Axel Brennicke
Distribution of RNA editing sites in Oenothera mitochondrial mRNAs and rRNAs.
Current genetics 1991;20(5):397-404.
1991: Stefan Binder; Volker Knoop; Axel Brennicke
Nucleotide sequences of the mitochondrial genes trnS(TGA) encoding tRNA(TGASer) in Oenothera berteriana and Arabidopsis thaliana.
Gene 1991;102(2):245-7.