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Alex Kolodkin

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Chemicals & Drugs

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Publications

TOP 3
Alex L Kolodkin; R Jeroen Pasterkamp
SnapShot: Axon Guidance II.
R Jeroen Pasterkamp; Alex L Kolodkin
SnapShot: Axon Guidance.
Rajnish Bharadwaj; Michael Delannoy; Daniel F Eberl; Thomas E Lloyd; Tomoko Ohyama; Madhuparna Roy; Elena Sivan-Loukianova; Marta Zlatic; Alex L Kolodkin
Cbl-associated protein regulates assembly and function of two tension-sensing structures in Drosophila.

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All Publications

2013: Alex L Kolodkin; R Jeroen Pasterkamp
SnapShot: Axon Guidance II.
Cell 2013;153(3):722-722.e1.
2013: R Jeroen Pasterkamp; Alex L Kolodkin
SnapShot: Axon Guidance.
Cell 2013;153(2):494, 494e1-2.
2013: Rajnish Bharadwaj; Michael Delannoy; Daniel F Eberl; Thomas E Lloyd; Tomoko Ohyama; Madhuparna Roy; Elena Sivan-Loukianova; Marta Zlatic; Alex L Kolodkin
Cbl-associated protein regulates assembly and function of two tension-sensing structures in Drosophila.
Development (Cambridge, England) 2013;140(3):627-38.
2013: Ryota L Matsuoka; Lu O Sun; Yutaka Yoshida; Kei-Ichi Katayama; Alex L Kolodkin
Sema6B, Sema6C, and Sema6D Expression and Function during Mammalian Retinal Development.
PloS one 2013;8(4):e63207.
2012: Zhuhao Wu; Benjamin J Andreone; Alex L Kolodkin
The coordinate regulation of sensory afferent CNS targeting and CNS longitudinal tract organization in Drosophila during neural development.
Journal of the peripheral nervous system : JPNS 2012;17 Suppl 3():34-7.
2012: Sangyun Jeong; Katarina Juhaszova; Alex L Kolodkin
The Control of semaphorin-1a-mediated reverse signaling by opposing pebble and RhoGAPp190 functions in drosophila.
Neuron 2012;76(4):721-34.
2012: Joong Youn Cho; Benjamin J Andreone; Kayam Chak; Joseph R Wooley; Alex L Kolodkin
The extracellular matrix proteoglycan perlecan facilitates transmembrane semaphorin-mediated repulsive guidance.
Genes & development 2012;26(19):2222-35.
2012: Froylan Calderon de Anda; Omer Durak; David D Ginty; Johannes Gräff; Alex L Kolodkin; Ram Madabhushi; Konstantinos Meletis; Damien Rei; Ana Lucia Rosario; Takahiro Soda; Tracy Tran; Li-Huei Tsai
Autism spectrum disorder susceptibility gene TAOK2 affects basal dendrite formation in the neocortex.
Nature neuroscience 2012;15(7):1022-31.
2012: Martin M Riccomagno; HongBin Wang; Joshua G J Macopson; Andrea Betz; Nils Brose; Erin M Griner; Andrés Hurtado; Marcelo G Kazanietz; Alex L Kolodkin
The RacGAP β2-Chimaerin selectively mediates axonal pruning in the hippocampus.
Cell 2012;149(7):1594-606.
2012: Ryota L Matsuoka; Kim T Nguyen-Ba-Charvet; Neal S Peachey; Ivy S Samuels; Lu O Sun; King-Wai Yau; Alain Chédotal; Zheng Jiang; Alex L Kolodkin
Guidance-cue control of horizontal cell morphology, lamination, and synapse formation in the mammalian outer retina.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2012;32(20):6859-68.
2012: Thomas E Lloyd; James Machamer; Brian D McCabe; Kathleen O'Hara; Brooke Sahin; Man Y Wong; Yunpeng Yang; Sarah E Collins; Wendy Imlach; Ji Han Kim; Edwin S Levitan; Alex L Kolodkin
The p150(Glued) CAP-Gly domain regulates initiation of retrograde transport at synaptic termini.
Neuron 2012;74(2):344-60.
2011: Lora B Sweeney; William Joo; Alex L Kolodkin; Zhuhao Wu; Christopher J Potter; K Christopher Garcia; Takaki Komiyama; Ya-Hui Chou; Liqun Luo
Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting.
Neuron 2011;72(5):734-47.
2011: Ryota L Matsuoka; Jeremy Nathans; Neal S Peachey; Ivy S Samuels; Fumikazu Suto; Yutaka Yoshida; Tudor Constantin Badea; Hugh Cahill; Alain Chédotal; Onanong Chivatakarn; Roman J Giger; Kei-Ichi Katayama; Sumit R Kumar; Alex L Kolodkin
Class 5 transmembrane semaphorins control selective Mammalian retinal lamination and function.
Neuron 2011;71(3):460-73.
2011: Alex L Kolodkin; Marc Tessier-Lavigne
Mechanisms and molecules of neuronal wiring: a primer.
Cold Spring Harbor perspectives in biology 2011;3(6):.
2011: Zhuhao Wu; Lora B Sweeney; Joseph C Ayoob; Kayam Chak; Benjamin J Andreone; Tomoko Ohyama; Rex Kerr; Liqun Luo; Marta Zlatic; Alex L Kolodkin
A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS.
Neuron 2011;70(2):281-98.
2011: Ryota L Matsuoka; Kim T Nguyen-Ba-Charvet; Aijaz Parray; Tudor Constantin Badea; Alain Chédotal; Alex L Kolodkin
Transmembrane semaphorin signalling controls laminar stratification in the mammalian retina.
Nature 2011;470(7333):259-63.
2010: Janna Merte; Qiang Wang; Craig W Vander Kooi; Sarah Sarsfield; Daniel J Leahy; Alex L Kolodkin; David D Ginty
A forward genetic screen in mice identifies Sema3A(K108N), which binds to neuropilin-1 but cannot signal.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2010;30(16):5767-75.
2009: Tracy S Tran; Maria E Rubio; Roger L Clem; Dontais Johnson; Lauren Case; Marc Tessier-Lavigne; Richard Huganir; David D Ginty; Alex L Kolodkin
Secreted semaphorins control spine distribution and morphogenesis in the postnatal CNS.
Nature 2009;462(7276):1065-9.
2009: Daniel Kirilly; Ying Gu; Yafen Huang; Zhuhao Wu; Arash Bashirullah; Boon Chuan Low; Alex L Kolodkin; Hongyan Wang; Fengwei Yu
A genetic pathway composed of Sox14 and Mical governs severing of dendrites during pruning.
Nature neuroscience 2009;12(12):1497-505.
2009: Sharon Kolk; Rou-Afza F Gunput; Tracy S Tran; Dianne M A van den Heuvel; Asheeta A Prasad; Anita J C G M Hellemons; Youri Adolfs; David D Ginty; Alex L Kolodkin; J Peter H Burbach; Marten P Smidt; R Jeroen Pasterkamp
Semaphorin 3F is a bifunctional guidance cue for dopaminergic axons and controls their fasciculation, channeling, rostral growth, and intracortical targeting.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2009;29(40):12542-57.
2007: Zhiyu Huang; Umar Yazdani; Katherine L Thompson-Peer; Alex L Kolodkin; Jonathan R Terman
Crk-associated substrate (Cas) signaling protein functions with integrins to specify axon guidance during development.
Development (Cambridge, England) 2007;134(12):2337-47.
2007: Kazuhiro Suzuki; Tatsusada Okuno; Midori Yamamoto; R Jeroen Pasterkamp; Noriko Takegahara; Hyota Takamatsu; Tomoe Kitao; Junichi Takagi; Paul D Rennert; Alex L Kolodkin; Atsushi Kumanogoh; Hitoshi Kikutani
Semaphorin 7A initiates T-cell-mediated inflammatory responses through alpha1beta1 integrin.
Nature 2007;446(7136):680-4.
2007: R Jeroen Pasterkamp; Sharon Kolk; Anita J C G M Hellemons; Alex L Kolodkin
Expression patterns of semaphorin7A and plexinC1 during rat neural development suggest roles in axon guidance and neuronal migration.
BMC developmental biology 2007;7():98.
2007: Tracy S Tran; Alex L Kolodkin; Rajnish Bharadwaj
Semaphorin regulation of cellular morphology.
Annual review of cell and developmental biology 2007;23():263-92.
2006: Joseph C Ayoob; Jonathan R Terman; Alex L Kolodkin
Drosophila Plexin B is a Sema-2a receptor required for axon guidance.
Development (Cambridge, England) 2006;133(11):2125-35.
2006: Rajnish Bharadwaj; Alex L Kolodkin
Descrambling Dscam diversity.
Cell 2006;125(3):421-4.
2006: R Jeroen Pasterkamp; Hai-ning Dai; Jonathan R Terman; Karl Wahlin; Byung Kim; Barbara S Bregman; Phillip Popovich; Alex L Kolodkin
MICAL flavoprotein monooxygenases: expression during neural development and following spinal cord injuries in the rat.
Molecular and cellular neurosciences 2006;31(1):52-69.
2005: Andrea B Huber; Artur Kania; Tracy S Tran; Chenghua Gu; Natalia De Marco Garcia; Ivo Lieberam; Dontais Johnson; Thomas M Jessell; David D Ginty; Alex L Kolodkin
Distinct roles for secreted semaphorin signaling in spinal motor axon guidance.
Neuron 2005;48(6):949-64.
2005: Christian Siebold; Nick S Berrow; thomas walter; Karl Harlos; Raymond J Owens; David I Stuart; Jonathan R Terman; Alex L Kolodkin; R Jeroen Pasterkamp; E Yvonne Jones
High-resolution structure of the catalytic region of MICAL (molecule interacting with CasL), a multidomain flavoenzyme-signaling molecule.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(46):16836-41.
2005: Amar Sahay; Chong-Hyun Kim; Jehuda P Sepkuty; Edward Cho; Richard Huganir; David D Ginty; Alex L Kolodkin
Secreted semaphorins modulate synaptic transmission in the adult hippocampus.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2005;25(14):3613-20.
2005: Jane Dodd; Alex L Kolodkin
Development: edging towards circuitry, behavior and disease.
Current opinion in neurobiology 2005;15(1):1-6.
2005: Chenghua Gu; Yutaka Yoshida; Jean Livet; Dorothy V Reimert; Fanny MANN; Janna Merte; Christopher E Henderson; Thomas M Jessell; Alex L Kolodkin; David D Ginty
Semaphorin 3E and plexin-D1 control vascular pattern independently of neuropilins.
Science (New York, N.Y.) 2005;307(5707):265-8.
2004: David B Kantor; Onanong Chivatakarn; Katherine L Peer; Stephen F Oster; Masaru Inatani; Michael J Hansen; John G Flanagan; Yu Yamaguchi; David W Sretavan; Roman J Giger; Alex L Kolodkin
Semaphorin 5A is a bifunctional axon guidance cue regulated by heparan and chondroitin sulfate proteoglycans.
Neuron 2004;44(6):961-75.
2004: Quenten Schwarz; Chenghua Gu; Hajime Fujisawa; Kimberly Sabelko; Marina Gertsenstein; Andras Nagy; Masahiko Taniguchi; Alex L Kolodkin; David D Ginty; David T Shima; Christiana Ruhrberg
Vascular endothelial growth factor controls neuronal migration and cooperates with Sema3A to pattern distinct compartments of the facial nerve.
Genes & development 2004;18(22):2822-34.
2004: Jean-François Cloutier; Amar Sahay; Ernie C Chang; Marc Tessier-Lavigne; Catherine Dulac; Alex L Kolodkin; David D Ginty
Differential requirements for semaphorin 3F and Slit-1 in axonal targeting, fasciculation, and segregation of olfactory sensory neuron projections.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(41):9087-96.
2004: Joseph C Ayoob; Hung-Hsiang Yu; Jonathan R Terman; Alex L Kolodkin
The Drosophila receptor guanylyl cyclase Gyc76C is required for semaphorin-1a-plexin A-mediated axonal repulsion.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(30):6639-49.
2004: Jonathan R Terman; Alex L Kolodkin
Nervy links protein kinase a to plexin-mediated semaphorin repulsion.
Science (New York, N.Y.) 2004;303(5661):1204-7.
2003: Amar Sahay; Mark E Molliver; David D Ginty; Alex L Kolodkin
Semaphorin 3F is critical for development of limbic system circuitry and is required in neurons for selective CNS axon guidance events.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2003;23(17):6671-80.
2003: R Jeroen Pasterkamp; Jacques J Peschon; Melanie K Spriggs; Alex L Kolodkin
Semaphorin 7A promotes axon outgrowth through integrins and MAPKs.
Nature 2003;424(6947):398-405.
2003: Chenghua Gu; E Rene Rodriguez; Dorothy V Reimert; Tianzhi Shu; Bernd Fritzsch; Linda J Richards; Alex L Kolodkin; David D Ginty
Neuropilin-1 conveys semaphorin and VEGF signaling during neural and cardiovascular development.
Developmental cell 2003;5(1):45-57.
2003: David B Kantor; Alex L Kolodkin
Curbing the excesses of youth: molecular insights into axonal pruning.
Neuron 2003;38(6):849-52.
2003: R Jeroen Pasterkamp; Alex L Kolodkin
Semaphorin junction: making tracks toward neural connectivity.
Current opinion in neurobiology 2003;13(1):79-89.
2003: Andrea B Huber; Alex L Kolodkin; David D Ginty; Jean-François Cloutier
Signaling at the growth cone: ligand-receptor complexes and the control of axon growth and guidance.
Annual review of neuroscience 2003;26():509-63.
2002: Jonathan R Terman; Tianyi Mao; R Jeroen Pasterkamp; Hung-Hsiang Yu; Alex L Kolodkin
MICALs, a family of conserved flavoprotein oxidoreductases, function in plexin-mediated axonal repulsion.
Cell 2002;109(7):887-900.
2002: Chenghua Gu; Brian J Limberg; G Brian Whitaker; Benjamin Perman; Daniel J Leahy; Jan S Rosenbaum; David D Ginty; Alex L Kolodkin
Characterization of neuropilin-1 structural features that confer binding to semaphorin 3A and vascular endothelial growth factor 165.
The Journal of biological chemistry 2002;277(20):18069-76.
2002: Jean-François Cloutier; Roman J Giger; Georgy Koentges; Catherine Dulac; Alex L Kolodkin; David D Ginty
Neuropilin-2 mediates axonal fasciculation, zonal segregation, but not axonal convergence, of primary accessory olfactory neurons.
Neuron 2002;33(6):877-92.
2001: Roman J Giger; Alex L Kolodkin
Silencing the siren: guidance cue hierarchies at the CNS midline.
Cell 2001;105(1):1-4.
2000: Hung-Hsiang Yu; Alex S Huang; Alex L Kolodkin
Semaphorin-1a acts in concert with the cell adhesion molecules fasciclin II and connectin to regulate axon fasciculation in Drosophila.
Genetics 2000;156(2):723-31.
2000: Roman J Giger; Alex L Kolodkin
Frazzled precision guides axons.
Nature 2000;406(6798):841, 843.
2000: L C Williams-Hogarth; Adam C Puche; C Torrey; Xiaohe Cai; Insuk Song; Alex L Kolodkin; Michael T Shipley; Gabriele V Ronnett
Expression of semaphorins in developing and regenerating olfactory epithelium.
The Journal of comparative neurology 2000;423(4):565-78.
2000: Roman J Giger; Jean-François Cloutier; Amar Sahay; Rab Prinjha; DV Levengood; S E Moore; S Pickering; D Simmons; Sohaila Rastan; Frank S Walsh; Alex L Kolodkin; David D Ginty; M Geppert
Neuropilin-2 is required in vivo for selective axon guidance responses to secreted semaphorins.
Neuron 2000;25(1):29-41.
1999: Jonathan R Terman; Alex L Kolodkin
Attracted or repelled? Look within.
Neuron 1999;23(2):193-5.
1999: Carolyn M Isbister; A Tsai; S T Wong; Alex L Kolodkin; Timothy P O'Connor
Discrete roles for secreted and transmembrane semaphorins in neuronal growth cone guidance in vivo.
Development (Cambridge, England) 1999;126(9):2007-19.
1999: Hung-Hsiang Yu; Alex L Kolodkin
Semaphorin signaling: a little less per-plexin.
Neuron 1999;22(1):11-4.
1998: Franck Polleux; Roman J Giger; David D Ginty; Alex L Kolodkin; Anirvan Ghosh
Patterning of cortical efferent projections by semaphorin-neuropilin interactions.
Science (New York, N.Y.) 1998;282(5395):1904-6.
1998: Roman J Giger; E R Urquhart; S K Gillespie; DV Levengood; David D Ginty; Alex L Kolodkin
Neuropilin-2 is a receptor for semaphorin IV: insight into the structural basis of receptor function and specificity.
Neuron 1998;21(5):1079-92.
1998: Anirvan Ghosh; Alex L Kolodkin
Specification of neuronal connectivity: ETS marks the spot.
Cell 1998;95(3):303-6.
1998: Hung-Hsiang Yu; H H Araj; S A Ralls; Alex L Kolodkin
The transmembrane Semaphorin Sema I is required in Drosophila for embryonic motor and CNS axon guidance.
Neuron 1998;20(2):207-20.
1998: Alex L Kolodkin
Semaphorin-mediated neuronal growth cone guidance.
Progress in brain research 1998;117():115-32.
1997: Alex L Kolodkin; David D Ginty
Steering clear of semaphorins: neuropilins sound the retreat.
Neuron 1997;19(6):1159-62.
1997: Alex L Kolodkin; DV Levengood; E G Rowe; Y T Tai; Roman J Giger; David D Ginty
Neuropilin is a semaphorin III receptor.
Cell 1997;90(4):753-62.
1996: Alex L Kolodkin
Growth cones and the cues that repel them.
Trends in neurosciences 1996;19(11):507-13.
1996: Joseph G Culotti; Alex L Kolodkin
Functions of netrins and semaphorins in axon guidance.
Current opinion in neurobiology 1996;6(1):81-8.
1996: Alex L Kolodkin
Semaphorins: mediators of repulsive growth cone guidance.
Trends in cell biology 1996;6(1):15-22.
1995: D J Matthes; H Sink; Alex L Kolodkin; Corey S Goodman
Semaphorin II can function as a selective inhibitor of specific synaptic arborizations.
Cell 1995;81(4):631-9.
1995: Elizabeth Messersmith; E D Leonardo; Carla J Shatz; Marc Tessier-Lavigne; Corey S Goodman; Alex L Kolodkin
Semaphorin III can function as a selective chemorepellent to pattern sensory projections in the spinal cord.
Neuron 1995;14(5):949-59.
1994: Alex L Kolodkin; A T Pickup; David M Lin; Corey S Goodman; Utpal Banerjee
Characterization of Star and its interactions with sevenless and EGF receptor during photoreceptor cell development in Drosophila.
Development (Cambridge, England) 1994;120(7):1731-45.
1993: Alex L Kolodkin; D J Matthes; Corey S Goodman
The semaphorin genes encode a family of transmembrane and secreted growth cone guidance molecules.
Cell 1993;75(7):1389-99.
1992: Alex L Kolodkin; D J Matthes; Timothy P O'Connor; Nipam H Patel; A Admon; D Bentley; Corey S Goodman
Fasciclin IV: sequence, expression, and function during growth cone guidance in the grasshopper embryo.
Neuron 1992;9(5):831-45.
1992: Hugo J Bellen; Harald Vaessin; Ethan Bier; Alex L Kolodkin; D D'Evelyn; S Kooyer; Yuh Nung Jan
The Drosophila couch potato gene: an essential gene required for normal adult behavior.
Genetics 1992;131(2):365-75.
1989: J Karpilow; Alex L Kolodkin; T Bork; T Venkatesh
Neuronal development in the Drosophila compound eye: rap gene function is required in photoreceptor cell R8 for ommatidial pattern formation.
Genes & development 1989;3(12A):1834-44.
1988: Animesh Ray; I Siddiqi; Alex L Kolodkin; Franklin W Stahl
Intra-chromosomal gene conversion induced by a DNA double-strand break in Saccharomyces cerevisiae.
Journal of molecular biology 1988;201(2):247-60.
1986: Alex L Kolodkin; A J Klar; Franklin W Stahl
Double-strand breaks can initiate meiotic recombination in S. cerevisiae.
Cell 1986;46(5):733-40.
1983: Alex L Kolodkin; M A Capage; E I Golub; K B Low
F sex factor of Escherichia coli K-12 codes for a single-stranded DNA binding protein.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(14):4422-6.