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Fedor Kolpakov

Research Profile

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Physiology

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Eukaryotic Cells

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Publications

TOP 3
Elena Kutumova; Ruslan Sharipov; Andrei Zinovyev; Fedor Kolpakov
Model composition through model reduction: a combined model of CD95 and NF-κB signaling pathways.
Fedor Kolpakov; Vladimir Poroikov; Ruslan Sharipov; Yury V Kondrakhin; Alexey Zakharov; Alexey A Lagunin; Luciano Milanesi; Alexander Kel
CYCLONET--an integrated database on cell cycle regulation and carcinogenesis.
Nikolay A Kolchanov; EA Anan'ko; Fedor Kolpakov; OA Podkolodnaia; EV Ignat'eva; T N Goriachkovskaia; E L Stepanenko
[Gene networks].

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All Publications

2013: Elena Kutumova; Ruslan Sharipov; Andrei Zinovyev; Fedor Kolpakov
Model composition through model reduction: a combined model of CD95 and NF-κB signaling pathways.
BMC systems biology 2013;7():13.
2007: Fedor Kolpakov; Vladimir Poroikov; Ruslan Sharipov; Yury V Kondrakhin; Alexey Zakharov; Alexey A Lagunin; Luciano Milanesi; Alexander Kel
CYCLONET--an integrated database on cell cycle regulation and carcinogenesis.
Nucleic acids research 2007;35(Database issue):D550-6.
2000: Nikolay A Kolchanov; EA Anan'ko; Fedor Kolpakov; OA Podkolodnaia; EV Ignat'eva; T N Goriachkovskaia; E L Stepanenko
[Gene networks].
Molekuliarnaia biologiia 2000;34(4):533-44.
2000: Nikolay A Kolchanov; Olga A Podkolodnaya; Elena A Ananko; Elena V Ignatieva; Irina L Stepanenko; Olga Kel-Margoulis; Alexander Kel; Tatyana I Merkulova; TN Goryachkovskaya; TV Busygina; Fedor Kolpakov; Nikolay L Podkolodny; Andrey N Naumochkin; I M Korostishevskaya; AG Romashchenko; GC Overton
Transcription regulatory regions database (TRRD): its status in 2000.
Nucleic acids research 2000;28(1):298-301.
1999: Nikolay A Kolchanov; Mikhail P Ponomarenko; Alexander Kel; Iu V Kondrakhin; Anatoly S Frolov; Fedor Kolpakov; T N Goriachkovskaia; OV Kel; EA Anan'ko; EV Ignat'eva
[GeneExpress: an integrator for databases and computer systems accessible by the Internet and intended for studying eukaryotic gene expression].
Biofizika 1999;44(5):837-41.
1999: EA Anan'ko; Fedor Kolpakov; GB Kolesov; Nikolay A Kolchanov
[Automatic generation of gene network schemes based on their formalized description in the GeneNet database].
Biofizika 1999;44(4):628-31.
1999: Fedor Kolpakov; Elena A Ananko
Interactive data input into the GeneNet database.
Bioinformatics (Oxford, England) 1999;15(7-8):713-4.
1999: Nikolay A Kolchanov; Mikhail P Ponomarenko; Anatoly S Frolov; Elena A Ananko; Fedor Kolpakov; Elena V Ignatieva; Olga A Podkolodnaya; TN Goryachkovskaya; Irina L Stepanenko; Tatyana I Merkulova; V V Babenko; Y V Ponomarenko; Alex V Kochetov; Nikolay L Podkolodny; D V Vorobiev; SV Lavryushev; Dmitry A Grigorovich; Yury V Kondrakhin; Luciano Milanesi; Edgar Wingender; V Solovyev; GC Overton
Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinformatics (Oxford, England) 1999;15(7-8):669-86.
1999: Nikolay A Kolchanov; Elena A Ananko; Olga A Podkolodnaya; Elena V Ignatieva; Irina L Stepanenko; Olga Kel-Margoulis; Alexander Kel; Tatyana I Merkulova; TN Goryachkovskaya; TV Busygina; Fedor Kolpakov; Nikolay L Podkolodny; Andrey N Naumochkin; AG Romashchenko
Transcription Regulatory Regions Database (TRRD):its status in 1999.
Nucleic acids research 1999;27(1):303-6.
1998: Nikolay A Kolchanov; Mikhail P Ponomarenko; Alexander Kel; Anatoly S Frolov; Fedor Kolpakov; T N Goryachkovsky; OV Kel; Elena A Ananko; Elena V Ignatieva; Olga A Podkolodnaya; Vladimir N Babenko; Irina L Stepanenko; AG Romashchenko; Tatyana I Merkulova; D G Vorobiev; SV Lavryushev; Alex V Kochetov; GB Kolesov; V V Solovyev; Luciano Milanesi; Nikolay L Podkolodny; Edgar Wingender; T Heinemeyer
GeneExpress: a computer system for description, analysis, and recognition of regulatory sequences in eukaryotic genome.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1998;6():95-104.
1998: Fedor Kolpakov; Elena A Ananko; GB Kolesov; Nikolay A Kolchanov
GeneNet: a gene network database and its automated visualization.
Bioinformatics (Oxford, England) 1998;14(6):529-37.
1998: T Heinemeyer; Edgar Wingender; Ingmar Reuter; Henning Hermjakob; Alexander Kel; OV Kel; Elena V Ignatieva; Elena A Ananko; Olga A Podkolodnaya; Fedor Kolpakov; Nikolay L Podkolodny; Nikolay A Kolchanov
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Nucleic acids research 1998;26(1):362-7.
1997: Fedor Kolpakov; AE Kel'; Mikhail P Ponomarenko; Nikolay A Kolchanov
[High heterogeneity of higher eukaryotic gene promoters, transcribed by RNA polymerase II].
Doklady Akademii nauk / [Rossiĭskaia akademii nauk] 1997;357(5):693-5.
1997: Fedor Kolpakov; Vladimir N Babenko
[The MGL computer system--an instrument for generating, graphically representing, and analyzing regulatory genomic sequences].
Molekuliarnaia biologiia 1997;31(4):647-55.
1997: AE Kel'; Nikolay A Kolchanov; OV Kel'; AG Romashchenko; EA Anan'ko; EV Ignat'eva; Tatyana I Merkulova; OA Podkolodnaia; Irina L Stepanenko; Alex V Kochetov; Fedor Kolpakov; N L Podkolodnyĭ; A A Naumochkin
[TRRD: a database of transcription regulatory regions in eukaryotic genes].
Molekuliarnaia biologiia 1997;31(4):626-36.