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Bette Korber

Research Profile

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Hua-Xin Liao; Xiaozhi Lu; Ben-Jiang Ma; David C Montefiori; Mark Muldoon; Robert Parks; Richard M Scearce; George M Shaw; Laura L Sutherland; Ron Swanstrom; Chun-Yen Tsao; Nathan Vandergrift; Sydeaka Watson; Shi-Mao Xia; S Munir Alam; Julie H Blinn; Cindy Bowman; Haiyan Chen; Andrew Foulger; Feng Gao; Beatrice H Hahn; Barton F Haynes; Alan Lapedes; Bette Korber
Antigenicity and immunogenicity of transmitted/founder, consensus, and chronic envelope glycoproteins of human immunodeficiency virus type 1.
Karina Yusim; Erica Borducchi; Rebecca Dilan; William Fischer; Elena Giorgi; Bette Korber; Joseph Marcotrigiano; Kelly Stanley; James Theiler; Dan H Barouch
Hepatitis C genotype 1 mosaic vaccines are immunogenic in mice and induce stronger T-cell responses than natural strains.
Carla Kuiken; Chienchi Lo; Hyejin Yoon; Werner Abfalterer; Brian Gaschen; Bette Korber
Viral genome analysis and knowledge management.

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2013: Hua-Xin Liao; Xiaozhi Lu; Ben-Jiang Ma; David C Montefiori; Mark Muldoon; Robert Parks; Richard M Scearce; George M Shaw; Laura L Sutherland; Ron Swanstrom; Chun-Yen Tsao; Nathan Vandergrift; Sydeaka Watson; Shi-Mao Xia; S Munir Alam; Julie H Blinn; Cindy Bowman; Haiyan Chen; Andrew Foulger; Feng Gao; Beatrice H Hahn; Barton F Haynes; Alan Lapedes; Bette Korber
Antigenicity and immunogenicity of transmitted/founder, consensus, and chronic envelope glycoproteins of human immunodeficiency virus type 1.
Journal of virology 2013;87(8):4185-201.
2013: Karina Yusim; Erica Borducchi; Rebecca Dilan; William Fischer; Elena Giorgi; Bette Korber; Joseph Marcotrigiano; Kelly Stanley; James Theiler; Dan H Barouch
Hepatitis C genotype 1 mosaic vaccines are immunogenic in mice and induce stronger T-cell responses than natural strains.
Clinical and vaccine immunology : CVI 2013;20(2):302-5.
2013: Carla Kuiken; Chienchi Lo; Hyejin Yoon; Werner Abfalterer; Brian Gaschen; Bette Korber
Viral genome analysis and knowledge management.
Methods in molecular biology (Clifton, N.J.) 2013;939():253-61.
2012: Chris Ford; Michael Chase; Shihai Feng; Mary Greene; Thomas R Ioerger; Bette Korber; Karina Yusim; Sarah Fortune
Mycobacterium tuberculosis--heterogeneity revealed through whole genome sequencing.
Tuberculosis (Edinburgh, Scotland) 2012;92(3):194-201.
2012: Paul W Fenimore; William M Fischer; Brian T Foley; Mary Kate Hart; Bette Korber; Majidat A Muhammad; Michael Parker; James R Thurmond; Hyejin Yoon; Karina Yusim; Russell R Bakken; John Michael Dye; Carla Kuiken
Designing and testing broadly-protective filoviral vaccines optimized for cytotoxic T-lymphocyte epitope coverage.
PloS one 2012;7(10):e44769.
2011: Bette Korber; S Gnanakaran
AIDS/HIV. Converging on an HIV vaccine.
Science (New York, N.Y.) 2011;333(6049):1589-90.
2010: Ingo Bulla; Anne-Kathrin Schultz; Fabian Schreiber; Ming Zhang; Thomas Leitner; Bette Korber; Burkhard Morgenstern; Mario Stanke
HIV classification using the coalescent theory.
Bioinformatics (Oxford, England) 2010;26(11):1409-15.
2010: Karina Yusim; William Fischer; Hyejin Yoon; James Thurmond; Paul W Fenimore; Georg Lauer; Bette Korber; Carla Kuiken
Genotype 1 and global hepatitis C T-cell vaccines designed to optimize coverage of genetic diversity.
The Journal of general virology 2010;91(Pt 5):1194-206.
2010: S Gnanakaran; Marcus G Daniels; Tanmoy Bhattacharya; Alan S Lapedes; Anurag Sethi; Ming Li; Haili Tang; Kelli Greene; Hongmei Gao; Barton F Haynes; Myron S Cohen; George M Shaw; Michael S Seaman; Amit Kumar; Feng Gao; David C Montefiori; Bette Korber
Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies.
PLoS computational biology 2010;6(10):e1000955.
2010: Ming Zhang; Brian Foley; Anne-Kathrin Schultz; Jennifer P Macke; Ingo Bulla; Mario Stanke; Burkhard Morgenstern; Bette Korber; Thomas Leitner
The role of recombination in the emergence of a complex and dynamic HIV epidemic.
Retrovirology 2010;7():25.
2009: Bette Korber; S Gnanakaran
The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility.
Current opinion in HIV and AIDS 2009;4(5):408-17.
2009: Anne-Kathrin Schultz; Ming Zhang; Ingo Bulla; Thomas Leitner; Bette Korber; Burkhard Morgenstern; Mario Stanke
jpHMM: improving the reliability of recombination prediction in HIV-1.
Nucleic acids research 2009;37(Web Server issue):W647-51.
2009: Athe M N Tsibris; Bette Korber; Ramy Arnaout; Carsten Russ; Chien-Chi Lo; Thomas Leitner; Brian Gaschen; James Theiler; Roger Paredes; Zhaohui Su; Michael D Hughes; Roy M Gulick; Wayne Greaves; Eoin Coakley; Charles Flexner; Chad Nusbaum; Daniel R Kuritzkes
Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo.
PloS one 2009;4(5):e5683.
2008: James Thurmond; Hyejin Yoon; Carla Kuiken; Karina Yusim; Simon Perkins; James Theiler; Tanmoy Bhattacharya; Bette Korber; Will Fischer
Web-based design and evaluation of T-cell vaccine candidates.
Bioinformatics (Oxford, England) 2008;24(14):1639-40.
2008: Kholiswa Ngumbela; Cheryl L Day; Zenele Mncube; Kriebashnie Nair; Danni Ramduth; Christina Thobakgale; Eshia Moodley; Sharon Reddy; C de Pierres; Nompumelelo Mkhwanazi; Karen Bishop; Mary van der Stok; N Ismail; Isobella Honeyborne; Hayley Crawford; Daniel G Kavanagh; Christine M Rousseau; David C Nickle; James Mullins; David Heckerman; Bette Korber; Hoosen Coovadia; Photini Kiepiela; Philip J R Goulder; Bruce D Walker
Targeting of a CD8 T cell env epitope presented by HLA-B*5802 is associated with markers of HIV disease progression and lack of selection pressure.
AIDS research and human retroviruses 2008;24(1):72-82.
2008: Will Fischer; Hua-Xin Liao; Barton F Haynes; Norman L Letvin; Bette Korber
Coping with viral diversity in HIV vaccine design: a response to Nickle et al.
PLoS computational biology 2008;4(1):e15; author reply e25.
2007: S Gnanakaran; Dorothy Lang; Marcus Daniels; Tanmoy Bhattacharya; Cynthia A Derdeyn; Bette Korber
Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.
Journal of virology 2007;81(9):4886-91.
2007: Tanmoy Bhattacharya; Marcus Daniels; David Heckerman; Brian Foley; Nicole Frahm; Carl Kadie; Jonathan Carlson; Karina Yusim; Ben McMahon; Brian Gaschen; Simon Mallal; James I Mullins; David C Nickle; Joshua Herbeck; Christine M Rousseau; Gerald Learn; Toshiyuki Miura; Christian Brander; Bruce Walker; Bette Korber
Founder effects in the assessment of HIV polymorphisms and HLA allele associations.
Science (New York, N.Y.) 2007;315(5818):1583-6.
2007: Sven Létourneau; Eung-Jun Im; Tumelo Mashishi; Choechoe Brereton; Anne Bridgeman; Hongbing Yang; Lucy Dorrell; Tao Dong; Bette Korber; Andrew J McMichael; Tomás Hanke
Design and pre-clinical evaluation of a universal HIV-1 vaccine.
PloS one 2007;2(10):e984.
2006: Ming Zhang; Anne-Kathrin Schultz; Charles Calef; Carla Kuiken; Thomas Leitner; Bette Korber; Burkhard Morgenstern; Mario Stanke
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1.
Nucleic acids research 2006;34(Web Server issue):W463-5.
2006: Ruth Dickover; Eileen Garratty; Karina Yusim; Catherine Miller; Bette Korber; Yvonne Bryson
Role of maternal autologous neutralizing antibody in selective perinatal transmission of human immunodeficiency virus type 1 escape variants.
Journal of virology 2006;80(13):6525-33.
2006: Bette Korber; Montiago LaBute; Karina Yusim
Immunoinformatics comes of age.
PLoS computational biology 2006;2(6):e71.
2006: Anne-Kathrin Schultz; Ming Zhang; Thomas Leitner; Carla Kuiken; Bette Korber; Burkhard Morgenstern; Mario Stanke
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
BMC bioinformatics 2006;7():265.
2005: Nicole Frahm; Sharon Adams; Photini Kiepiela; Caitlyn H Linde; Hannah S Hewitt; Mathias Lichterfeld; Kaori Sango; Nancy V Brown; Eunice Pae; Alysse Wurcel; Marcus Altfeld; Margaret E Feeney; Todd M Allen; Timothy Roach; M Anne St John; Eric S Daar; Eric Rosenberg; Bette Korber; Francesco M Marincola; Bruce D Walker; Philip J R Goulder; Christian Brander
HLA-B63 presents HLA-B57/B58-restricted cytotoxic T-lymphocyte epitopes and is associated with low human immunodeficiency virus load.
Journal of virology 2005;79(16):10218-25.
2005: Alasdair Leslie; Daniel Kavanagh; Isobella Honeyborne; Katja Pfafferott; Charles Edwards; Tilly Pillay; Louise Hilton; Christina Thobakgale; Danni Ramduth; Rika Draenert; Sylvie Le Gall; Graz Luzzi; Anne Edwards; Christian Brander; Andrew K Sewell; Sarah Moore; James Mullins; Corey Moore; Simon Mallal; Nina Bhardwaj; Karina Yusim; Rodney Phillips; Paul Klenerman; Bette Korber; Photini Kiepiela; Bruce Walker; Philip J R Goulder
Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA.
The Journal of experimental medicine 2005;201(6):891-902.
2005: Karina Yusim; Russell Richardson; Ning Tao; Anita Dalwani; Ashish Agrawal; James Szinger; Robert Funkhouser; Bette Korber; Carla Kuiken
Los alamos hepatitis C immunology database.
Applied bioinformatics 2005;4(4):217-25.
2005: John Mokili; Bette Korber
The spread of HIV in Africa.
Journal of neurovirology 2005;11 Suppl 1():66-75.
2004: Photini Kiepiela; Alasdair Leslie; Isobella Honeyborne; Danni Ramduth; Christina Thobakgale; Senica Chetty; Prinisha Rathnavalu; Corey Moore; Katja Pfafferott; Louise Hilton; Peter Zimbwa; Sarah Moore; Todd Allen; Christian Brander; Marylyn M Addo; Marcus Altfeld; Ian James; Simon Mallal; Mike Bunce; Linda D Barber; James Szinger; Cheryl Day; Paul Klenerman; James Mullins; Bette Korber; Hoosen M Coovadia; Bruce D Walker; Philip J R Goulder
Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.
Nature 2004;432(7018):769-75.
2004: Ming Zhang; Brian Gaschen; Wendy Blay Puryear; Brian Foley; Nancy Haigwood; Carla Kuiken; Bette Korber
Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin.
Glycobiology 2004;14(12):1229-46.
2004: Mathias Lichterfeld; Xu G Yu; Daniel Cohen; Marylyn M Addo; Jessica M Malenfant; Beth Perkins; Eunice Pae; Mary N Johnston; Daryld Strick; Todd M Allen; Eric S Rosenberg; Bette Korber; Bruce D Walker; Marcus Altfeld
HIV-1 Nef is preferentially recognized by CD8 T cells in primary HIV-1 infection despite a relatively high degree of genetic diversity.
AIDS (London, England) 2004;18(10):1383-92.
2003: Beth D Jamieson; Otto O Yang; Lance E Hultin; Mary Ann Hausner; Patricia M Hultin; Jose Matud; Kevin Kunstman; Michael Scott Killian; John D Altman; Kristina Kommander; Bette Korber; Janis V Giorgi; Steven Wolinsky
Epitope escape mutation and decay of human immunodeficiency virus type 1-specific CTL responses.
Journal of immunology (Baltimore, Md. : 1950) 2003;171(10):5372-9.
2003: Bette Korber
AIDS Vaccine 2003. 18-21 September 2003, New York, NY, USA.
IDrugs : the investigational drugs journal 2003;6(11):1046-8.
2003: Elizabeth Trachtenberg; Bette Korber; Cristina Sollars; Thomas B Kepler; Peter T Hraber; Elizabeth Hayes; Robert Funkhouser; Michael Fugate; James Theiler; Yen S Hsu; Kevin Kunstman; Samuel Wu; John Phair; Henry A Erlich; Steven Wolinsky
Advantage of rare HLA supertype in HIV disease progression.
Nature medicine 2003;9(7):928-35.
2003: Marcus Altfeld; Marylyn M Addo; Raj Shankarappa; Paul K Lee; Todd M Allen; Xu G Yu; Almas Rathod; Jason Harlow; Kristin M O'Sullivan; Mary N Johnston; Philip J R Goulder; James I Mullins; Eric S Rosenberg; Christian Brander; Bette Korber; Bruce D Walker
Enhanced detection of human immunodeficiency virus type 1-specific T-cell responses to highly variable regions by using peptides based on autologous virus sequences.
Journal of virology 2003;77(13):7330-40.
2003: Carla Kuiken; Bette Korber; Robert W Shafer
HIV sequence databases.
AIDS reviews 2003;5(1):52-61.
2002: Andre C Lyra; Xiaofeng Fan; Dorothy M Lang; Karina Yusim; Sanjay Ramrakhiani; Elizabeth M Brunt; Bette Korber; Alan S Perelson; Adrian M Di Bisceglie
Evolution of hepatitis C viral quasispecies after liver transplantation.
Gastroenterology 2002;123(5):1485-93.
2002: Brian Gaschen; Jesse Taylor; Karina Yusim; Brian Foley; Feng Gao; Dorothy Lang; Vladimir Novitsky; Barton Haynes; Beatrice H Hahn; Tanmoy Bhattacharya; Bette Korber
Diversity considerations in HIV-1 vaccine selection.
Science (New York, N.Y.) 2002;296(5577):2354-60.
2002: Paul Krogstad; Susan H Eshleman; Yongzhi Geng; J Brooks Jackson; Michael Wantman; Bette Korber; Dorothy Lang; Andrew Wiznia; George M Johnson; Sharon Nachman; Paul Palumbo
Mother-to-child transmission in the United States of subtypes D and A/G human immunodeficiency virus type 1.
AIDS research and human retroviruses 2002;18(6):413-7.
2001: Karina Yusim; M Peeters; O G Pybus; Tanmoy Bhattacharya; E Delaporte; C Mulanga; Mark Muldoon; James Theiler; Bette Korber
Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2001;356(1410):855-66.
2001: Brian Gaschen; Carla Kuiken; Bette Korber; Brian Foley
Retrieval and on-the-fly alignment of sequence fragments from the HIV database.
Bioinformatics (Oxford, England) 2001;17(5):415-8.
2001: Bette Korber; Brian Gaschen; Karina Yusim; R Thakallapally; Can Kesmir; Vincent Detours
Evolutionary and immunological implications of contemporary HIV-1 variation.
British medical bulletin 2001;58():19-42.
2000: Bette Korber; Mark Muldoon; James Theiler; Feng Gao; R Gupta; A Lapedes; Beatrice H Hahn; Steven Wolinsky; Tanmoy Bhattacharya
Timing the ancestor of the HIV-1 pandemic strains.
Science (New York, N.Y.) 2000;288(5472):1789-96.
2000: David L Robertson; J P Anderson; J A Bradac; Jean K Carr; Brian Foley; Robert Funkhouser; F Gao; Beatrice H Hahn; Marcia L Kalish; Carla Kuiken; Gerald Learn; Thomas Leitner; F McCutchan; Saladin Osmanov; M Peeters; Danuta Pieniazek; M Salminen; Paul M Sharp; Steven Wolinsky; Bette Korber
HIV-1 nomenclature proposal.
Science (New York, N.Y.) 2000;288(5463):55-6.
1998: Bette Korber; James Theiler; Steven Wolinsky
Limitations of a molecular clock applied to considerations of the origin of HIV-1.
Science (New York, N.Y.) 1998;280(5371):1868-71.
1998: Christian Brander; Kelly Hartman; Alicja Trocha; Norman Jones; R Paul Johnson; Bette Korber; PA Wentworth; SP Buchbinder; Steven Wolinsky; Bruce D Walker; Spyros A Kalams
Lack of strong immune selection pressure by the immunodominant, HLA-A*0201-restricted cytotoxic T lymphocyte response in chronic human immunodeficiency virus-1 infection.
The Journal of clinical investigation 1998;101(11):2559-66.
1998: Lisa M Frenkel; James I Mullins; Gerald Learn; LA Manns-Arcuino; B L Herring; Marcia L Kalish; R W Steketee; Donald M Thea; Joan Nichols; S L Liu; ABDALLAH HARMACHE; X He; David Muthui; A Madan; L Hood; Ashley T Haase; Mary Zupancic; KA Staskus; Steven Wolinsky; Paul Krogstad; J Zhao; I Chen; R Koup; D Ho; Bette Korber; Raymond Apple; Robert W Coombs; Savita Pahwa; Norbert J Roberts
Genetic evaluation of suspected cases of transient HIV-1 infection of infants.
Science (New York, N.Y.) 1998;280(5366):1073-7.
1997: H Cao; Phyllis J Kanki; Jean-louis Sankale; Abdoulaye Dieng Sarr; G P Mazzara; Spyros A Kalams; Bette Korber; Souleymane MBoup; Bruce D Walker
Cytotoxic T-lymphocyte cross-reactivity among different human immunodeficiency virus type 1 clades: implications for vaccine development.
Journal of virology 1997;71(11):8615-23.
1997: Y Chen; Robert Winchester; Bette Korber; J Gagliano; Yvonne Bryson; Cecelia Hutto; N Martin; George McSherry; Ann Petru; Diane Wara; Arthur J Ammann
Influence of HLA alleles on the rate of progression of vertically transmitted HIV infection in children: association of several HLA-DR13 alleles with long-term survivorship and the potential association of HLA-A*2301 with rapid progression to AIDS. Long-Term Survivor Study.
Human immunology 1997;55(2):154-62.