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Seizo Koshiba

Research Profile

Procedures

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Genes & Molecular Sequences

Amino Acid Sequences

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Chemicals & Drugs

Physiology

Protein Folding

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Mouse

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Publications

TOP 3
Hiroyuki Kogure; Seizo Koshiba; Naoya Tochio; Shigeyuki Yokoyama; Peter Güntert; Mamoru Hagihara; Yusuke Hikawa; Yusuke Inoue; Takanori Kigawa; Nobukazu Nameki
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65.
Kyoko Hanawa-Suetsugu; Takuhiro Ito; Tomoya Katakai; Takanori Kigawa; Tatsuo Kinashi; Daisuke Kohda; Seizo Koshiba; Mutsuko Kukimoto-Niino; Chiemi Mishima-Tsumagari; Akihiko Nishikimi; Noboru Ohsawa; Shun-ichi Sekine; Mikako Shirouzu; Takaho Terada; Naoya Tochio; Takehito Uruno; Ryogo Akasaka; Yoshinori Fukui; Shigeyuki Yokoyama
Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Makoto Nagano; Mikako Shirouzu; Takuya Shuo; Naoya Tochio; Tadashi Tomizawa; Satoru Watanabe; Shigeyuki Yokoyama; Toshifumi Akizawa; Noriko Handa; Takushi Harada; Fumiaki Hayashi; Daisuke Hoshino; Takanori Kigawa; Seizo Koshiba; Naohiko Koshikawa; Motoharu Seiki
ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain.

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All Publications

2012: Hiroyuki Kogure; Seizo Koshiba; Naoya Tochio; Shigeyuki Yokoyama; Peter Güntert; Mamoru Hagihara; Yusuke Hikawa; Yusuke Inoue; Takanori Kigawa; Nobukazu Nameki
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65.
Proteins 2012;80(11):2629-42.
2012: Kyoko Hanawa-Suetsugu; Takuhiro Ito; Tomoya Katakai; Takanori Kigawa; Tatsuo Kinashi; Daisuke Kohda; Seizo Koshiba; Mutsuko Kukimoto-Niino; Chiemi Mishima-Tsumagari; Akihiko Nishikimi; Noboru Ohsawa; Shun-ichi Sekine; Mikako Shirouzu; Takaho Terada; Naoya Tochio; Takehito Uruno; Ryogo Akasaka; Yoshinori Fukui; Shigeyuki Yokoyama
Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(9):3305-10.
2011: Makoto Nagano; Mikako Shirouzu; Takuya Shuo; Naoya Tochio; Tadashi Tomizawa; Satoru Watanabe; Shigeyuki Yokoyama; Toshifumi Akizawa; Noriko Handa; Takushi Harada; Fumiaki Hayashi; Daisuke Hoshino; Takanori Kigawa; Seizo Koshiba; Naohiko Koshikawa; Motoharu Seiki
ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain.
The Journal of biological chemistry 2011;286(36):31598-609.
2011: Takashi Yaeno; Satoru Watanabe; Angela Chaparro-Garcia; Sophien Kamoun; Takanori Kigawa; Seizo Koshiba; Hua Li; Sebastian Schornack; Ken Shirasu
Phosphatidylinositol monophosphate-binding interface in the oomycete RXLR effector AVR3a is required for its stability in host cells to modulate plant immunity.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(35):14682-7.
2011: Joon Shin; Naoya Tochio; Nagakumar Bharatham; Goutam Chakraborty; Congbao Kang; Takanori Kigawa; Kyong-Tai Kim; Wanil Kim; Seizo Koshiba; Ho Sup Yoon
NMR solution structure of human vaccinia-related kinase 1 (VRK1) reveals the C-terminal tail essential for its structural stability and autocatalytic activity.
The Journal of biological chemistry 2011;286(25):22131-8.
2011: Jun Yokoyama; Takayoshi Matsuda; Seizo Koshiba; Naoya Tochio; Takanori Kigawa
A practical method for cell-free protein synthesis to avoid stable isotope scrambling and dilution.
Analytical biochemistry 2011;411(2):223-9.
2010: Jun Yokoyama; Takayoshi Matsuda; Seizo Koshiba; Takanori Kigawa
An economical method for producing stable-isotope labeled proteins by the E. coli cell-free system.
Journal of biomolecular NMR 2010;48(4):193-201.
2010: Naoya Tochio; Takashi Umehara; Yoshiko Munemasa; Toru Suzuki; Shin Sato; Kengo Tsuda; Seizo Koshiba; Takanori Kigawa; Ryozo Nagai; Shigeyuki Yokoyama
Solution structure of histone chaperone ANP32B: interaction with core histones H3-H4 through its acidic concave domain.
Journal of molecular biology 2010;401(1):97-114.
2010: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Makoto Inoue; Akiko Tanaka; Sumio Sugano; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the C-terminal DUF1000 domain of the human thioredoxin-like 1 protein.
Proteins 2010;78(9):2176-80.
2010: Seizo Koshiba; Hua Li; Yoko Motoda; Tadashi Tomizawa; Takuma Kasai; Naoya Tochio; Takashi Yabuki; Takushi Harada; Satoru Watanabe; Akiko Tanaka; Mikako Shirouzu; Takanori Kigawa; Tadashi Yamamoto; Shigeyuki Yokoyama
Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2.
Journal of structural and functional genomics 2010;11(2):125-41.
2010: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Makoto Inoue; Makato Inoue; Satoru Watanabe; Takushi Harada; Akiko Tanaka; Osamu Ohara; Takanori Kigawa; Shigeyuki Yokoyama
The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
Journal of structural and functional genomics 2010;11(2):181-8.
2009: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Manami Sato; Makato Inoue; Satoru Watanabe; Yoshihide Hayashizaki; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
NMR solution structures of actin depolymerizing factor homology domains.
Protein science : a publication of the Protein Society 2009;18(11):2384-92.
2008: Ryo Kitahara; Chenhua Zhao; Kohei Saito; Seizo Koshiba; Makoto Ioune; Takanori Kigawa; Shigeyuki Yokoyama; Kazuyuki Akasaka
Basic folded and low-populated locally disordered conformers of SUMO-2 characterized by NMR spectroscopy at varying pressures.
Biochemistry 2008;47(1):30-9.
2007: Naohiro Kobayashi; Junji Iwahara; Seizo Koshiba; Tadashi Tomizawa; Naoya Tochio; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.
Journal of biomolecular NMR 2007;39(1):31-52.
2007: Misao Yoneyama; Naoya Tochio; Takashi Umehara; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Satoru Watanabe; Yasuko Tomo; Yuji Nishimura; Takushi Harada; Takaho Terada; Mikako Shirouzu; Yoshihide Hayashizaki; Osamu Ohara; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
Structural and functional differences of SWIRM domain subtypes.
Journal of molecular biology 2007;369(1):222-38.
2007: Takayoshi Matsuda; Seizo Koshiba; Naoya Tochio; Eiko Seki; Noriyuki Iwasaki; Takashi Yabuki; Makoto Inoue; Shigeyuki Yokoyama; Takanori Kigawa
Improving cell-free protein synthesis for stable-isotope labeling.
Journal of biomolecular NMR 2007;37(3):225-9.
2007: Satoshi Ohnishi; Peter Güntert; Seizo Koshiba; Tadashi Tomizawa; Ryogo Akasaka; Naoya Tochio; Manami Sato; Makoto Inoue; Takushi Harada; Satoru Watanabe; Akiko Tanaka; Mikako Shirouzu; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form.
FEBS letters 2007;581(3):462-8.
2006: Naoya Tochio; Seizo Koshiba; Naohiro Kobayashi; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Yoko Motoda; Atsuo Kobayashi; Akiko Tanaka; Yoshihide Hayashizaki; Takaho Terada; Mikako Shirouzu; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.
Protein science : a publication of the Protein Society 2006;15(11):2534-43.
2006: Takayoshi Matsuda; Takanori Kigawa; Seizo Koshiba; Makoto Inoue; Masaaki Aoki; Kazuhiko Yamasaki; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Cell-free synthesis of zinc-binding proteins.
Journal of structural and functional genomics 2006;7(2):93-100.
2006: Naoya Tochio; Takashi Umehara; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Satoru Watanabe; Yasuko Tomo; Masaru Hanada; Masaomi Ikari; Miyuki Sato; Takaho Terada; Takahiro Nagase; Osamu Ohara; Mikako Shirouzu; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the SWIRM domain of human histone demethylase LSD1.
Structure (London, England : 1993) 2006;14(3):457-68.
2005: Hua Li; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Yoko Motoda; Atsuo Kobayashi; Takaho Terada; Mikako Shirouzu; Seizo Koshiba; Yi-Jan Lin; Peter Güntert; Harukazu Suzuki; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.
Journal of biomolecular NMR 2005;32(4):329-34.
2005: Anna Scott; David Pantoja-Uceda; Seizo Koshiba; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Sumio Sugano; Shigeyuki Yokoyama; Peter Güntert
Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes.
Journal of biomolecular NMR 2005;31(4):357-61.
2005: Nobukazu Nameki; Naoya Tochio; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yukiko Fujikura; Miyuki Saito; Masaomi Ikari; Megumi Watanabe; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Akiko Tanaka; Yoshihide Hayashizaki; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Protein science : a publication of the Protein Society 2005;14(3):756-64.
2005: David Pantoja-Uceda; Blanca López-Méndez; Seizo Koshiba; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama; Peter Güntert
Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana.
Protein science : a publication of the Protein Society 2005;14(1):224-30.
2004: Anna Scott; David Pantoja-Uceda; Seizo Koshiba; Makoto Inoue; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Sumio Sugano; Shigeyuki Yokoyama; Peter Güntert
NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES.
Journal of biomolecular NMR 2004;30(4):463-4.
2004: Kohei Saito; Takanori Kigawa; Seizo Koshiba; Kazuo Sato; Yo Matsuo; Ayako Sakamoto; Tetsuo Takagi; Mikako Shirouzu; Takashi Yabuki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Masaaki Aoki; Yukako Miyata; Noriko Hirakawa; Makoto Inoue; Takaho Terada; Takahiro Nagase; Reiko Kikuno; Manabu Nakayama; Osamu Ohara; Akiko Tanaka; Shigeyuki Yokoyama
The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma.
Structure (London, England : 1993) 2004;12(9):1719-28.
2004: Nobukazu Nameki; Misao Yoneyama; Seizo Koshiba; Naoya Tochio; Makoto Inoue; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takushi Harada; Kohei Saito; Naohiro Kobayashi; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Natsuko Matsuda; Noriko Sakagami; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Takashi Osanai; Akiko Tanaka; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kengo Kinoshita; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the RWD domain of the mouse GCN2 protein.
Protein science : a publication of the Protein Society 2004;13(8):2089-100.
2004: David Pantoja-Uceda; Blanca López-Méndez; Seizo Koshiba; Takanori Kigawa; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Hiroshi Hirota; Mayumi Yoshida; Akiko Tanaka; Takashi Osanai; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama; Peter Güntert
NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana.
Journal of biomolecular NMR 2004;29(2):207-8.
2004: Blanca López-Méndez; David Pantoja-Uceda; Tadashi Tomizawa; Seizo Koshiba; Takanori Kigawa; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Hiroshi Hirota; Mayumi Yoshida; Akiko Tanaka; Takashi Osanai; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama; Peter Güntert
NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana.
Journal of biomolecular NMR 2004;29(2):205-6.
2004: Takeshi Maeda; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Yoko Motoda; Atsuo Kobayashi; Fumiko Hiroyasu; Mikako Shirouzu; Takaho Terada; Nobuhiro Hayami; Yoshiko Ishizuka; Naoko Shinya; Ayako Tatsuguchi; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16).
The Journal of biological chemistry 2004;279(13):13174-82.
2004: Takuma Kasai; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Natsuko Matsuda; Yasuko Tomo; Mikako Shirouzu; Takaho Terada; Naomi Obayashi; Hiroaki Hamana; Naoko Shinya; Ayako Tatsuguchi; Satoko Yasuda; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Harukazu Suzuki; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of a BolA-like protein from Mus musculus.
Protein science : a publication of the Protein Society 2004;13(2):545-8.
2002: Kay Fukushima; Jun Kikuchi; Seizo Koshiba; Takanori Kigawa; Yutaka Kuroda; Shigeyuki Yokoyama
Solution structure of the DFF-C domain of DFF45/ICAD. A structural basis for the regulation of apoptotic DNA fragmentation.
Journal of molecular biology 2002;321(2):317-27.
2002: Hideki Hatanaka; Seizo Koshiba; Jun Kikuchi; Takanori Kigawa; Shigeyuki Yokoyama
[High-throughput NMR structure determination: The present and the future].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2002;47(8 Suppl):1038-44.
2002: Seizo Koshiba; Takanori Kigawa; Akira Kikuchi; Shigeyuki Yokoyama
Solution structure of the epsin N-terminal homology (ENTH) domain of human epsin.
Journal of structural and functional genomics 2002;2(1):1-8.
2001: S Matsumoto; T Yoshiga; N Yokoyama; M Iwanaga; Seizo Koshiba; T Kigawa; H Hirota; S Yokoyama; K Okano; K Mita; Toru Shimada; S Tatsuki
Characterization of acyl-CoA-binding protein (ACBP) in the pheromone gland of the silkworm, Bombyx mori.
Insect biochemistry and molecular biology 2001;31(6-7):603-9.
2001: Takashi Itoh; Seizo Koshiba; Takanori Kigawa; Akira Kikuchi; Shigeyuki Yokoyama; Tadaomi Takenawa
Role of the ENTH domain in phosphatidylinositol-4,5-bisphosphate binding and endocytosis.
Science (New York, N.Y.) 2001;291(5506):1047-51.
1999: Seizo Koshiba; Takanori Kigawa; Junji Iwahara; A Kikuchi; Shigeyuki Yokoyama
Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1).
FEBS letters 1999;442(2-3):138-42.
1997: Seizo Koshiba; Takanori Kigawa; J H Kim; Mikako Shirouzu; D Bowtell; Shigeyuki Yokoyama
The solution structure of the pleckstrin homology domain of mouse Son-of-sevenless 1 (mSos1).
Journal of molecular biology 1997;269(4):579-91.