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Irina Kratchmarova

Research Profile

Occupations

Proteomics

Physiology

Procedures

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Mouse

Anatomy

Chemicals & Drugs

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Molecular Sequence Data

Genes & Molecular Sequences

Amino Acid Sequences

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Publications

TOP 3
Lars P Kristensen; Maria Overbeck Nielsen; Diyako W Qanie; Li Chen; Moustapha Kassem; Irina Kratchmarova; Jens S Andersen
Temporal profiling and pulsed SILAC labeling identify novel secreted proteins during ex vivo osteoblast differentiation of human stromal stem cells.
Nerea Osinalde; Ana M Zubiaga; Helle Moss; Miren J Omaetxebarria; Jesus M Arizmendi; Onetsine Arrizabalaga; Blagoy Blagoev; Asier Fullaondo; Irina Kratchmarova
Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics.
Ditte C Andersen; Li Chen; Stan Gronthos; Charlotte H Jensen; Ole N Jensen; Angela Kortesidis; Irina Kratchmarova; Børge Teisner; Andrew C W Zannettino; Moustapha Kassem
Development of novel monoclonal antibodies that define differentiation stages of human stromal (mesenchymal) stem cells.

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All Publications

2012: Lars P Kristensen; Maria Overbeck Nielsen; Diyako W Qanie; Li Chen; Moustapha Kassem; Irina Kratchmarova; Jens S Andersen
Temporal profiling and pulsed SILAC labeling identify novel secreted proteins during ex vivo osteoblast differentiation of human stromal stem cells.
Molecular & cellular proteomics : MCP 2012;11(10):989-1007.
2011: Nerea Osinalde; Ana M Zubiaga; Helle Moss; Miren J Omaetxebarria; Jesus M Arizmendi; Onetsine Arrizabalaga; Blagoy Blagoev; Asier Fullaondo; Irina Kratchmarova
Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics.
Journal of proteomics 2011;75(1):177-91.
2011: Ditte C Andersen; Li Chen; Stan Gronthos; Charlotte H Jensen; Ole N Jensen; Angela Kortesidis; Irina Kratchmarova; Børge Teisner; Andrew C W Zannettino; Moustapha Kassem
Development of novel monoclonal antibodies that define differentiation stages of human stromal (mesenchymal) stem cells.
Molecules and cells 2011;32(2):133-42.
2011: Jeanette Henningsen; Bente Klarlund Pedersen; Irina Kratchmarova
Quantitative analysis of the secretion of the MCP family of chemokines by muscle cells.
Molecular bioSystems 2011;7(2):311-21.
2011: Kristoffer T G Rigbolt; Tatyana A Prokhorova; Vyacheslav Akimov; Jeanette Henningsen; Pia T Johansen; Irina Kratchmarova; Moustapha Kassem; Matthias Mann; Jesper V Olsen; Blagoy Blagoev
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.
Science signaling 2011;4(164):rs3.
2010: Jeanette Henningsen; Kristoffer T G Rigbolt; Blagoy Blagoev; Bente Klarlund Pedersen; Irina Kratchmarova
Dynamics of the skeletal muscle secretome during myoblast differentiation.
Molecular & cellular proteomics : MCP 2010;9(11):2482-96.
2010: Dean Hammond; Russell Hyde; Irina Kratchmarova; Robert Beynon; Blagoy Blagoev; Michael J Clague
Quantitative analysis of HGF and EGF-dependent phosphotyrosine signaling networks.
Journal of proteome research 2010;9(5):2734-42.
2010: Jörn Dengjel; Irina Kratchmarova; Blagoy Blagoev
Mapping protein-protein interactions by quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) 2010;658():267-78.
2009: Joern Dengjel; Irina Kratchmarova; Blagoy Blagoev
Receptor tyrosine kinase signaling: a view from quantitative proteomics.
Molecular bioSystems 2009;5(10):1112-21.
2009: Tatyana A Prokhorova; Kristoffer T G Rigbolt; Pia T Johansen; Jeanette Henningsen; Irina Kratchmarova; Moustapha Kassem; Blagoy Blagoev
Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells.
Molecular & cellular proteomics : MCP 2009;8(5):959-70.
2009: Yonathan Lissanu Deribe; Philipp Wild; Akhila Chandrashaker; Jasna Curak; Mirko H H Schmidt; Yannis Kalaidzidis; Natasa Milutinovic; Irina Kratchmarova; Lukas Buerkle; Michael J Fetchko; Philipp Schmidt; Saranya Kittanakom; Kevin R Brown; Igor Jurisica; Blagoy Blagoev; Marino Zerial; Igor Stagljar; Ivan Dikic
Regulation of epidermal growth factor receptor trafficking by lysine deacetylase HDAC6.
Science signaling 2009;2(102):ra84.
2008: Marcus Krüger; Irina Kratchmarova; Blagoy Blagoev; Yu-Hua Tseng; C Ronald Kahn; Matthias Mann
Dissection of the insulin signaling pathway via quantitative phosphoproteomics.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(7):2451-6.
2008: S Gruhler; Irina Kratchmarova
Stable isotope labeling by amino acids in cell culture (SILAC).
Methods in molecular biology (Clifton, N.J.) 2008;424():101-11.
2006: Irena Iankova; Rasmus K Petersen; Jean-Sébastien Annicotte; Carine Chavey; Jacob B Hansen; Irina Kratchmarova; David Sarruf; Monsef Benkirane; Karsten Kristiansen; Lluis Fajas
Peroxisome proliferator-activated receptor gamma recruits the positive transcription elongation factor b complex to activate transcription and promote adipogenesis.
Molecular endocrinology (Baltimore, Md.) 2006;20(7):1494-505.
2006: Hans Häcker; Vanessa Redecke; Blagoy Blagoev; Irina Kratchmarova; Li-Chung Hsu; Gang G Wang; Mark P Kamps; Eyal Raz; Hermann Wagner; Georg Häcker; Matthias Mann; Michael Karin
Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6.
Nature 2006;439(7073):204-7.
2005: Irina Kratchmarova; Blagoy Blagoev; Mandana Haack-Sorensen; Moustapha Kassem; Matthias Mann
Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation.
Science (New York, N.Y.) 2005;308(5727):1472-7.
2004: Blagoy Blagoev; Shao-En Ong; Irina Kratchmarova; Matthias Mann
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics.
Nature biotechnology 2004;22(9):1139-45.
2004: Nieves Ibarrola; Irina Kratchmarova; Daisuke Nakajima; William P Schiemann; Aristidis Moustakas; Akhilesh Pandey; Matthias Mann
Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling.
BMC cell biology 2004;5():2.
2003: Shao-En Ong; Irina Kratchmarova; Matthias Mann
Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC).
Journal of proteome research 2003;2(2):173-81.
2003: Blagoy Blagoev; Irina Kratchmarova; Shao-En Ong; Mogens Nielsen; Leonard J Foster; Matthias Mann
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling.
Nature biotechnology 2003;21(3):315-8.
2002: Akhilesh Pandey; Blagoy Blagoev; Irina Kratchmarova; Minerva Fernandez; Mogens Nielsen; Troels Zakarias Kristiansen; Osamu Ohara; Alexandre Podtelejnikov; Serge Roche; Harvey Lodish; Matthias Mann
Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases.
Oncogene 2002;21(52):8029-36.
2002: Blagoy Blagoev; Irina Kratchmarova; Mogens M Nielsen; Minerva M Fernandez; Jesper Voldby; Jens S Andersen; Karsten Kristiansen; Akhilesh Pandey; Matthias Mann
Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature.
The Journal of biological chemistry 2002;277(44):42011-6.
2002: Torben Helledie; Claus Jørgensen; Marianne Antonius; Anne-M Krogsdam; Irina Kratchmarova; Karsten Kristiansen; Susanne Mandrup
Role of adipocyte lipid-binding protein (ALBP) and acyl-coA binding protein (ACBP) in PPAR-mediated transactivation.
Molecular and cellular biochemistry 2002;239(1-2):157-64.
2002: Claus Jørgensen; Anne-M Krogsdam; Irina Kratchmarova; Timothy M Willson; Jens Knudsen; Susanne Mandrup; Karsten Kristiansen
Opposing effects of fatty acids and acyl-CoA esters on conformation and cofactor recruitment of peroxisome proliferator-activated receptors.
Annals of the New York Academy of Sciences 2002;967():431-9.
2002: Akhilesh Pandey; Nieves Ibarrola; Irina Kratchmarova; Minerva M Fernandez; Stefan N Constantinescu; Osamu Ohara; Sansana Sawasdikosol; Harvey Lodish; Matthias Mann
A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling.
The Journal of biological chemistry 2002;277(21):19131-8.
2002: Shao-En Ong; Blagoy Blagoev; Irina Kratchmarova; Dan Bach Kristensen; Hanno Steen; Akhilesh Pandey; Matthias Mann
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Molecular & cellular proteomics : MCP 2002;1(5):376-86.
2002: Irina Kratchmarova; Dario E Kalume; Blagoy Blagoev; Philipp E Scherer; Alexandre Podtelejnikov; Henrik Molina; Perry E Bickel; Jens S Andersen; Minerva M Fernandez; Jakob Bunkenborg; Peter Roepstorff; Karsten Kristiansen; Harvey Lodish; Matthias Mann; Akhilesh Pandey
A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes.
Molecular & cellular proteomics : MCP 2002;1(3):213-22.
2001: N T Eriksen; Irina Kratchmarova; Søren Neve; Karsten Kristiansen; Jens J L Iversen
Automatic inducer addition and harvesting of recombinant Escherichia coli cultures based on indirect on-line estimation of biomass concentration and specific growth rate.
Biotechnology and bioengineering 2001;75(3):355-61.
2001: Morten Elholm; I Dam; C Jorgensen; Anne-M Krogsdam; Dorte Holst; Irina Kratchmarova; M Gottlicher; J A Gustafsson; Rolf K Berge; Torgeir Flatmark; Jens Knudsen; Susanne Mandrup; Karsten Kristiansen
Acyl-CoA esters antagonize the effects of ligands on peroxisome proliferator-activated receptor alpha conformation, DNA binding, and interaction with Co-factors.
The Journal of biological chemistry 2001;276(24):21410-6.
2001: Majken Westergaard; Jeanette Henningsen; Morten Lyhne Svendsen; Claus Johansen; Uffe B Jensen; Henrik Daa Schrøder; Irina Kratchmarova; Rolf K Berge; Lars Iversen; Lars Bolund; Knud Kragballe; Karsten Kristiansen
Modulation of keratinocyte gene expression and differentiation by PPAR-selective ligands and tetradecylthioacetic acid.
The Journal of investigative dermatology 2001;116(5):702-12.
2001: Irina Kratchmarova; T Sosinowski; A Weiss; K Witter; Claudius Vincenz; Akhilesh Pandey
Characterization of promoter region and genomic structure of the murine and human genes encoding Src like adapter protein.
Gene 2001;262(1-2):267-73.
1999: S Kussmann-Gerber; Irina Kratchmarova; Susanne Mandrup; Karsten Kristiansen
Microaffinity columns for analysis of protein-protein interactions.
Analytical biochemistry 1999;271(1):102-5.