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Dave Kudrna

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TOP 3
Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
Thais Rezende e Silva Figueira; Marcio Jose da Silva; Dave Kudrna; Vagner Okura; Felipe Rodrigues da Silva; Jayson Talag; Rod A Wing; Jetty S S Ammiraju; Paulo Arruda
A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.
Xiang Song; José L Goicoechea; Jetty S S Ammiraju; Meizhong Luo; Ruifeng He; Jinke Lin; So-Jeong Lee; Nicholas Sisneros; Tom Watts; Dave Kudrna; Wolfgang Golser; Elizabeth Ashley; Kristi Collura; Michele Braidotti; Yeisoo Yu; Luciano M Matzkin; Bryant F McAllister; Therese Ann Markow; Rod A Wing
The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research.

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All Publications

2013: Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
BMC plant biology 2013;13():27.
2012: Thais Rezende e Silva Figueira; Marcio Jose da Silva; Dave Kudrna; Vagner Okura; Felipe Rodrigues da Silva; Jayson Talag; Rod A Wing; Jetty S S Ammiraju; Paulo Arruda
A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.
BMC research notes 2012;5():185.
2011: Xiang Song; José L Goicoechea; Jetty S S Ammiraju; Meizhong Luo; Ruifeng He; Jinke Lin; So-Jeong Lee; Nicholas Sisneros; Tom Watts; Dave Kudrna; Wolfgang Golser; Elizabeth Ashley; Kristi Collura; Michele Braidotti; Yeisoo Yu; Luciano M Matzkin; Bryant F McAllister; Therese Ann Markow; Rod A Wing
The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research.
Genetics 2011;187(4):1023-30.
2011: Jinke Lin; Dave Kudrna; Rod A Wing
Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis).
Journal of biomedicine & biotechnology 2011;2011():476723.
2010: Bonnie L Hurwitz; Dave Kudrna; Yeisoo Yu; Aswathy Sebastian; Andrea Zuccolo; Scott A Jackson; Doreen Ware; Rod A Wing; Lincoln Stein
Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.
The Plant journal : for cell and molecular biology 2010;63(6):990-1003.
2009: Carol Soderlund; Anne Descour; Dave Kudrna; Matthew Bomhoff; Lomax Boyd; Jennifer Currie; Angelina Angelova; Kristi Collura; Marina Wissotski; Elizabeth Ashley; Darren Morrow; John Fernandes; Virginia Walbot; Yeisoo Yu
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PLoS genetics 2009;5(11):e1000740.
2009: Fusheng Wei; Jianwei Zhang; Shiguo Zhou; Ruifeng He; Mary Schaeffer; Kristi Collura; Dave Kudrna; Ben P Faga; Marina Wissotski; Wolfgang Golser; Susan M Rock; Tina A Graves; Robert S Fulton; Ed Coe; Patrick S Schnable; David C Schwartz; Doreen Ware; Sandra W Clifton; Richard K Wilson; Rod A Wing
The physical and genetic framework of the maize B73 genome.
PLoS genetics 2009;5(11):e1000715.
2009: Husen Zhang; John K DiBaise; Andrea Zuccolo; Dave Kudrna; Michele Braidotti; Yeisoo Yu; Prathap Parameswaran; Michael D Crowell; Rod A Wing; Bruce Rittman; Rosa Krajmalnik-Brown
Human gut microbiota in obesity and after gastric bypass.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(7):2365-70.
2009: Tom Drader; Kara Johnson; Robert Brueggeman; Dave Kudrna; Andris Kleinhofs
Genetic and physical mapping of a high recombination region on chromosome 7H(1) in barley.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2009;118(4):811-20.
2008: Robert Brueggeman; Arnis Druka; Jayaveeramuthu Nirmala; T Cavileer; T Drader; Nils Rostoks; A Mirlohi; H Bennypaul; U Gill; Dave Kudrna; C Whitelaw; Andrzej Kilian; F Han; Y Sun; K Gill; Brian J Steffenson; Andris Kleinhofs
The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(39):14970-5.
2008: William Nelson; Meizhong Luo; Jianxin Ma; Matt Estep; James Estill; Ruifeng He; Jayson Talag; Nicholas B Sisneros; Dave Kudrna; Hyeran Kim; Jetty S S Ammiraju; Kristi Collura; Arvind K Bharti; Joachim Messing; Rod A Wing; Phillip SanMiguel; Jeffrey L Bennetzen; Carol Soderlund
Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.
BMC genomics 2008;9():621.
2008: HyeRan Kim; Bonnie Hurwitz; Yeisoo Yu; Kristi Collura; Navdeep Gill; Phillip SanMiguel; James C Mullikin; Christopher A. Maher; William Nelson; Marina Wissotski; Michele Braidotti; Dave Kudrna; José L Goicoechea; Lincoln Stein; Doreen Ware; Scott A Jackson; Carol Soderlund; Rod A Wing
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
Genome biology 2008;9(2):R45.
2007: RC Venu; Yulin Jia; Malali Gowda; Melissa H Jia; Chatchawan Jantasuriyarat; Eric Stahlberg; Huameng Li; Andrew Rhineheart; Prashanth Boddhireddy; Pratibha Singh; Neil Rutger; Dave Kudrna; Rod A Wing; James Nelson; Guo-Liang Wang
RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.
Molecular genetics and genomics : MGG 2007;278(4):421-31.
2007: Andrea Zuccolo; Aswathy Sebastian; Jayson Talag; Yeisoo Yu; HyeRan Kim; Kristi Collura; Dave Kudrna; Rod A Wing
Transposable element distribution, abundance and role in genome size variation in the genus Oryza.
BMC evolutionary biology 2007;7():152.
2006: Coen Adema; Mei-Zhong Luo; Ben Hanelt; Lynn A Hertel; Jennifer J Marshall; Si-Ming Zhang; Randall J DeJong; Hye-Ran Kim; Dave Kudrna; Rod A Wing; Carol Soderlund; Matty Knight; Fred A Lewis; Roberta Lima Caldeira; Liana K Jannotti-Passos; Omar dos Santos Carvalho; Eric S Loker
A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni.
Memórias do Instituto Oswaldo Cruz 2006;101 Suppl 1():167-77.
2006: Barbara L Hass-Jacobus; Montona Futrell-Griggs; Brian Abernathy; Rick Westerman; José L Goicoechea; Joshua Stein; Patricia Klein; Bonnie Hurwitz; Bin Zhou; Fariborz Rakhshan; Abhijit Sanyal; Navdeep Gill; Jer-Young Lin; Jason G Walling; Mei Zhong Luo; Jetty S S Ammiraju; Dave Kudrna; Hye Ran Kim; Doreen Ware; Rod A Wing; Phillip San Miguel; Scott A Jackson
Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.
BMC genomics 2006;7():199.
2006: Meizhong Luo; Hyeran Kim; Dave Kudrna; Nicholas B Sisneros; So-Jeong Lee; Christopher Mueller; Kristi Collura; Andrea Zuccolo; E Bryan Buckingham; Suzanne M Grim; Kazuyo Yanagiya; Hidetoshi Inoko; Takashi Shiina; Martin F Flajnik; Rod A Wing; Yuko Ota
Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey.
BMC genomics 2006;7():106.
2006: Jetty S S Ammiraju; Meizhong Luo; José L Goicoechea; Wenming Wang; Dave Kudrna; Christopher Mueller; Jayson Talag; HyeRan Kim; Nicholas B Sisneros; Barbara P Blackmon; Eric Fang; Jeffrey Tomkins; Darshan S Brar; David Mackill; Susan R McCouch; Nori Kurata; Georgina Lambert; David W Galbraith; K Arumuganathan; Kiran Rao; Jason G Walling; Navdeep Gill; Yeisoo Yu; Phillip SanMiguel; Carol Soderlund; Scott Jackson; Rod A Wing
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.
Genome research 2006;16(1):140-7.
2006: Meizhong Luo; Yeisoo Yu; Hyeran Kim; Dave Kudrna; Yuichiro Itoh; Robert J Agate; Esther Melamed; José L Goicoechea; Jayson Talag; Christopher Mueller; Wenming Wang; Jennifer Currie; Nicholas B Sisneros; Rod A Wing; Arthur P Arnold
Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region.
Genomics 2006;87(1):181-90.
2005: Jetty S S Ammiraju; Yeisoo Yu; Meizhong Luo; Dave Kudrna; HyeRan Kim; José L Goicoechea; Yuichi Katayose; Takashi Matsumoto; Jianzhong Wu; Takuji Sasaki; Rod A Wing
Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(8):1596-607.
2005: Rod A Wing; Jetty S S Ammiraju; Meizhong Luo; Hyeran Kim; Yeisoo Yu; Dave Kudrna; José L Goicoechea; Wenming Wang; William Nelson; Kiran Rao; Darshan S Brar; David Mackill; Bin Han; Carol Soderlund; Lincoln Stein; Phillip SanMiguel; Scott Jackson
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Plant molecular biology 2005;59(1):53-62.
2005: Wenming Wang; Milos Tanurdzic; Meizhong Luo; Nicholas B Sisneros; Hye Ran Kim; Jing-Ke Weng; Dave Kudrna; Christopher Mueller; K Arumuganathan; John Carlson; Clint Chapple; Claude de Pamphilis; Dina F Mandoli; Jeffrey Tomkins; Rod A Wing; Jo Ann Banks
Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics.
BMC plant biology 2005;5():10.
2004: Peter Wenzl; Jason Carling; Dave Kudrna; Damian Jaccoud; Eric Huttner; Andris Kleinhofs; Andrzej Kilian
Diversity Arrays Technology (DArT) for whole-genome profiling of barley.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9915-20.
2004: N Kandemir; A Yildirim; Dave Kudrna; Patrick M Hayes; Andris Kleinhofs
Marker assisted genetic analysis of non-brittle rachis trait in barley.
Hereditas 2004;141(3):272-7.
2003: Nils Rostoks; Deric Schmierer; Dave Kudrna; Andris Kleinhofs
Barley putative hypersensitive induced reaction genes: genetic mapping, sequence analyses and differential expression in disease lesion mimic mutants.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(6):1094-101.
2003: A J Castro; F Capettini; Ann E Corey; T Filichkina; Patrick M Hayes; Andris Kleinhofs; Dave Kudrna; K Richardson; S Sandoval-Islas; C Rossi; H Vivar
Mapping and pyramiding of qualitative and quantitative resistance to stripe rust in barley.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(5):922-30.
2003: Arnis Druka; Dave Kudrna; Nils Rostoks; Robert Brueggeman; Diter von Wettstein; Andris Kleinhofs
Chalcone isomerase gene from rice (Oryza sativa) and barley (Hordeum vulgare): physical, genetic and mutation mapping.
Gene 2003;302(1-2):171-8.
2002: Robert Brueggeman; Nils Rostoks; Dave Kudrna; Andrzej Kilian; F Han; Jun Chen; Arnis Druka; Brian J Steffenson; Andris Kleinhofs
The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(14):9328-33.
2002: Ming Li; Yi Pan; An-Sheng Li; Dave Kudrna; Andris Kleinhofs
Fine mapping of a semi-dwarf gene brachytic 1 in barley.
Yi chuan xue bao = Acta genetica Sinica 2002;29(7):634-7.
2002: Arnis Druka; Dave Kudrna; C Gamini Kannangara; Diter von Wettstein; Andris Kleinhofs
Physical and genetic mapping of barley (Hordeum vulgare) germin-like cDNAs.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(2):850-5.
2000: Jonathan D Soule; Dave Kudrna; Andris Kleinhofs
Isolation, mapping, and characterization of two barley multiovary mutants.
The Journal of heredity 2000;91(6):483-7.
2000: Arnis Druka; Dave Kudrna; F Han; Andrzej Kilian; Brian J Steffenson; David A Frisch; Jeffrey Tomkins; Rod A Wing; Andris Kleinhofs
Physical mapping of the barley stem rust resistance gene rpg4.
Molecular & general genetics : MGG 2000;264(3):283-90.