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Wen-Lin Kuo

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Publications

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Steven M Hill; Wen-Lin Kuo; Nora Bayani; Joe W Gray; Richard M Neve; Paul Spellman; Safiyyah Ziyad; Sach Mukherjee
Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology.
Olga K Mirzoeva; Debopriya Das; Laura M Heiser; Sanchita Bhattacharya; Doris Siwak; Rina Gendelman; Nora Bayani; Nicholas J Wang; Richard M Neve; Yinghui Guan; Zhi Hu; Zachary A Knight; Heidi S Feiler; Philippe Gascard; Bahram Parvin; Paul Spellman; Kevan M Shokat; Andrew J Wyrobek; Mina J Bissell; Frank McCormick; Wen-Lin Kuo; Gordon B Mills; Joe Gray; W Michael Korn
Basal subtype and MAPK/ERK kinase (MEK)-phosphoinositide 3-kinase feedback signaling determine susceptibility of breast cancer cells to MEK inhibition.
Wen-Lin Kuo; Debopriya Das; Safiyyah Ziyad; Sanchita Bhattacharya; William J Gibb; Laura M Heiser; Anguraj Sadanandam; Gerald V Fontenay; Zhi Hu; Nicholas J Wang; Nora Bayani; Heidi S Feiler; Richard M Neve; Andrew J Wyrobek; Paul Spellman; Laurence J Marton; Joe Gray
A systems analysis of the chemosensitivity of breast cancer cells to the polyamine analogue PG-11047.

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All Publications

2012: Steven M Hill; Wen-Lin Kuo; Nora Bayani; Joe W Gray; Richard M Neve; Paul Spellman; Safiyyah Ziyad; Sach Mukherjee
Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology.
BMC bioinformatics 2012;13():94.
2009: Olga K Mirzoeva; Debopriya Das; Laura M Heiser; Sanchita Bhattacharya; Doris Siwak; Rina Gendelman; Nora Bayani; Nicholas J Wang; Richard M Neve; Yinghui Guan; Zhi Hu; Zachary A Knight; Heidi S Feiler; Philippe Gascard; Bahram Parvin; Paul Spellman; Kevan M Shokat; Andrew J Wyrobek; Mina J Bissell; Frank McCormick; Wen-Lin Kuo; Gordon B Mills; Joe Gray; W Michael Korn
Basal subtype and MAPK/ERK kinase (MEK)-phosphoinositide 3-kinase feedback signaling determine susceptibility of breast cancer cells to MEK inhibition.
Cancer research 2009;69(2):565-72.
2009: Wen-Lin Kuo; Debopriya Das; Safiyyah Ziyad; Sanchita Bhattacharya; William J Gibb; Laura M Heiser; Anguraj Sadanandam; Gerald V Fontenay; Zhi Hu; Nicholas J Wang; Nora Bayani; Heidi S Feiler; Richard M Neve; Andrew J Wyrobek; Paul Spellman; Laurence J Marton; Joe Gray
A systems analysis of the chemosensitivity of breast cancer cells to the polyamine analogue PG-11047.
BMC medicine 2009;7():77.
2008: Meera Nanjundan; Kwai Wa Cheng; Fan Zhang; John P Lahad; Wen-Lin Kuo; Rosemarie Schmandt; Karen Smith-McCune; David Fishman; Joe Gray; Gordon B Mills
Overexpression of SnoN/SkiL, amplified at the 3q26.2 locus, in ovarian cancers: a role in ovarian pathogenesis.
Molecular oncology 2008;2(2):164-81.
2007: Yinghui Guan; Wen-Lin Kuo; Jackie L Stilwell; Hirokuni Takano; Anna Lapuk; Jane Fridlyand; Jian-Hua Mao; Mamie Yu; Melinda A Miller; Jennifer L Santos; Steve Kalloger; Joseph W Carlson; David Ginzinger; Susan E Celniker; Gordon B Mills; David Huntsman; Joe Gray
Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(19):5745-55.
2007: Peixiang Li; Sarah L Maines-Bandiera; Wen-Lin Kuo; Yinghui Guan; Yu Sun; Mark Hills; Guiqing Huang; Collin C Collins; Peter C K Leung; Joe Gray; Nelly Auersperg
Multiple roles of the candidate oncogene ZNF217 in ovarian epithelial neoplastic progression.
International journal of cancer. Journal international du cancer 2007;120(9):1863-73.
2007: Meera Nanjundan; Yasuhisa Nakayama; Kwai Wa Cheng; John P Lahad; Jinsong Liu; Karen Lu; Wen-Lin Kuo; Karen Smith-McCune; David Fishman; Joe Gray; Gordon B Mills
Amplification of MDS1/EVI1 and EVI1, located in the 3q26.2 amplicon, is associated with favorable patient prognosis in ovarian cancer.
Cancer research 2007;67(7):3074-84.
2006: Koei Chin; Sandy Devries; Jane Fridlyand; Paul Spellman; Ritu Roydasgupta; Wen-Lin Kuo; Anna Lapuk; Richard M Neve; Zuwei Qian; Tom Ryder; Fanqing Chen; Heidi Feiler; Taku Tokuyasu; Christopher Kingsley; Shanaz H Dairkee; Zhenhang Meng; Karen L Chew; Daniel Pinkel; Ajay Jain; Britt-Marie Ljung; Laura Esserman; Donna G Albertson; Frederic M Waldman; Joe Gray
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies.
Cancer cell 2006;10(6):529-41.
2006: Richard M Neve; Koei Chin; Jane Fridlyand; Jennifer Yeh; Frederick L Baehner; Tea Fevr; Laura Clark; Nora Bayani; Jean-Philippe Coppe; Frances Tong; Terence P Speed; Paul Spellman; Sandy Devries; Anna Lapuk; Nick J Wang; Wen-Lin Kuo; Jackie L Stilwell; Daniel Pinkel; Donna G Albertson; Frederic M Waldman; Frank McCormick; Robert B Dickson; Michael D Johnson; Marc Lippman; Stephen Ethier; Adi F Gazdar; Joe Gray
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes.
Cancer cell 2006;10(6):515-27.
2006: Kimberly J Bussey; Koei Chin; Samir Lababidi; Mark Reimers; William C Reinhold; Wen-Lin Kuo; Fuad G Gwadry; Hosein Kouros-Mehr; Jane Fridlyand; Ajay Jain; Colin Collins; Satoshi Nishizuka; Giovanni Tonon; Anna V Roschke; Kristen S Gehlhaus; Ilan Kirsch; Dominic A Scudiero; Joe Gray; John N Weinstein
Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel.
Molecular cancer therapeutics 2006;5(4):853-67.
2006: Christopher Kingsley; Wen-Lin Kuo; Daniel Polikoff; Andrew Berchuck; Joe Gray; Ajay N Jain
Magellan: a web based system for the integrated analysis of heterogeneous biological data and annotations; application to DNA copy number and expression data in ovarian cancer.
Cancer informatics 2006;2():10-21.
2005: Astrid Eder; Xiaomei Sui; Daniel G Rosen; Laura K Nolden; Kwai Wa Cheng; John P Lahad; Madhuri Kango-Singh; Karen H Lu; Carla L Warneke; E Neely Atkinson; Isabelle Bedrosian; Khandan Keyomarsi; Wen-Lin Kuo; Joe Gray; Jerry C P Yin; Jinsong Liu; Georg Halder; Gordon B Mills
Atypical PKCiota contributes to poor prognosis through loss of apical-basal polarity and cyclin E overexpression in ovarian cancer.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(35):12519-24.
2004: Kwai Wa Cheng; John P Lahad; Wen-Lin Kuo; Anna Lapuk; Kyosuke Yamada; Nelly Auersperg; Jinsong Liu; Karen Smith-McCune; Karen H Lu; David Fishman; Joe Gray; Gordon B Mills
The RAB25 small GTPase determines aggressiveness of ovarian and breast cancers.
Nature medicine 2004;10(11):1251-6.
2004: Koei Chin; Carlos Ortiz de Solorzano; David Knowles; Arthur Jones; William Chou; Enrique Garcia Rodriguez; Wen-Lin Kuo; Britt-Marie Ljung; Karen L Chew; Kenneth Myambo; Monica Miranda; Sheryl Krig; James C Garbe; Martha Stampfer; Paul Yaswen; Joe Gray; Stephen J Lockett
In situ analyses of genome instability in breast cancer.
Nature genetics 2004;36(9):984-8.
2004: Anna Lapuk; Stanislav Volik; Robert Vincent; Koei Chin; Wen-Lin Kuo; Pieter De Jong; Colin Collins; Joe Gray
Computational BAC clone contig assembly for comprehensive genome analysis.
Genes, chromosomes & cancer 2004;40(1):66-71.
2004: Sarah L Maines-Bandiera; David Huntsman; Valia Lestou; Wen-Lin Kuo; Peter C K Leung; R Douglas Horsman; Alice S T Wong; Michelle M M Woo; Keith K C Choi; Calvin D Roskelley; Nelly Auersperg
Epithelio-mesenchymal transition in a neoplastic ovarian epithelial hybrid cell line.
Differentiation; research in biological diversity 2004;72(4):150-61.
2003: Stanislav Volik; Shaying Zhao; Koei Chin; John H Brebner; David R Herndon; Quanzhou Tao; David Kowbel; Guiqing Huang; Anna Lapuk; Wen-Lin Kuo; Gregg Magrane; Pieter De Jong; Joe Gray; Colin Collins
End-sequence profiling: sequence-based analysis of aberrant genomes.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(13):7696-701.
2003: Joris Veltman; Jane Fridlyand; Sunanda Pejavar; Adam B Olshen; James Korkola; Sandy Devries; Peter Carroll; Wen-Lin Kuo; Daniel Pinkel; Donna Albertson; Carlos Cordon-Cardo; Ajay N Jain; Frederic M Waldman
Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors.
Cancer research 2003;63(11):2872-80.
2003: Joe Gray; Seiji Suzuki; Wen-Lin Kuo; Daniel Polikoff; Michael Deavers; Karen Smith-McCune; Andrew Berchuck; Daniel Pinkel; Donna G Albertson; Gordon B Mills
Specific keynote: genome copy number abnormalities in ovarian cancer.
Gynecologic oncology 2003;88(1 Pt 2):S16-21; discussion S22-4.
2002: Pierre P Massion; Wen-Lin Kuo; David Stokoe; Adam B Olshen; Patrick Treseler; Koei Chin; Chira Chen; Daniel Polikoff; Ajay N Jain; Daniel Pinkel; Donna G Albertson; David M Jablons; Joe Gray
Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway.
Cancer research 2002;62(13):3636-40.
2002: Zheng Li; Zhen Hang Meng; Raman Chandrasekaran; Wen-Lin Kuo; Colin C Collins; Joe Gray; Shanaz H Dairkee
Biallelic inactivation of the thyroid hormone receptor beta1 gene in early stage breast cancer.
Cancer research 2002;62(7):1939-43.
2001: Colin Collins; Stanislav Volik; David Kowbel; David Ginzinger; Bauke Ylstra; T Cloutier; Trevor L Hawkins; Paul Predki; C Martin; M Wernick; Wen-Lin Kuo; ARTHUR S ALBERTS; Joe Gray
Comprehensive genome sequence analysis of a breast cancer amplicon.
Genome research 2001;11(6):1034-42.
2000: Donna G Albertson; Bauke Ylstra; Richard Segraves; Colin Collins; Shanaz H Dairkee; David Kowbel; Wen-Lin Kuo; Joe Gray; Daniel Pinkel
Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene.
Nature genetics 2000;25(2):144-6.
2000: L Masat; RA Liddell; BA Mock; Wen-Lin Kuo; Rolf Jessberger; Matthias Wabl; Herbert C Morse
Mapping of the SWAP70 gene to mouse chromosome 7 and human chromosome 11p15.
Immunogenetics 2000;51(1):16-9.
1999: W Michael Korn; T Yasutake; Wen-Lin Kuo; Robert S Warren; C Collins; M Tomita; Joe Gray; Frederic M Waldman
Chromosome arm 20q gains and other genomic alterations in colorectal cancer metastatic to liver, as analyzed by comparative genomic hybridization and fluorescence in situ hybridization.
Genes, chromosomes & cancer 1999;25(2):82-90.
1999: Yinhua Yu; F Xu; Hua Peng; Xiang Fang; S Zhao; Y Li; Bruce D Cuevas; Wen-Lin Kuo; Joe Gray; M Siciliano; Gordon B Mills; Robert C Bast
NOEY2 (ARHI), an imprinted putative tumor suppressor gene in ovarian and breast carcinomas.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(1):214-9.
1999: L Shayesteh; Y Lu; Wen-Lin Kuo; R Baldocchi; T Godfrey; Colin Collins; Daniel Pinkel; B Powell; Gordon B Mills; Joe Gray
PIK3CA is implicated as an oncogene in ovarian cancer.
Nature genetics 1999;21(1):99-102.
1998: Daniel Pinkel; Richard Segraves; Damir Sudar; S Clark; I Poole; David Kowbel; Colin Collins; Wen-Lin Kuo; C Chen; Y Zhai; Shanaz H Dairkee; Britt-Marie Ljung; Joe Gray; Donna G Albertson
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.
Nature genetics 1998;20(2):207-11.
1998: H Zhou; Jian Kuang; L Zhong; Wen-Lin Kuo; Joe Gray; A Sahin; B R Brinkley; Subrata Sen
Tumour amplified kinase STK15/BTAK induces centrosome amplification, aneuploidy and transformation.
Nature genetics 1998;20(2):189-93.
1998: Ling-Chun Chen; S Manjeshwar; Y Lu; Dan Moore; Britt-Marie Ljung; Wen-Lin Kuo; Shanaz H Dairkee; M Wernick; Colin Collins; HS Smith
The human homologue for the Caenorhabditis elegans cul-4 gene is amplified and overexpressed in primary breast cancers.
Cancer research 1998;58(16):3677-83.
1998: Colin Collins; J M Rommens; David Kowbel; T Godfrey; M Tanner; S I Hwang; Daniel Polikoff; GH Nonet; JF Cochran; Kenneth Myambo; K E Jay; J Froula; T Cloutier; Wen-Lin Kuo; Paul Yaswen; Shanaz H Dairkee; J Giovanola; G B Hutchinson; J Isola; Olli Kallioniemi; M Palazzolo; C Martin; C Ericsson; Daniel Pinkel; Donna G Albertson; W B Li; Joe Gray
Positional cloning of ZNF217 and NABC1: genes amplified at 20q13.2 and overexpressed in breast carcinoma.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(15):8703-8.
1998: Barbara J Trask; Cynthia Friedman; A Martin-Gallardo; Lee Rowen; C Akinbami; J Blankenship; C Collins; Dominique Giorgi; Shawn P Iadonato; F Johnson; Wen-Lin Kuo; Hillary F Massa; Tammy Morrish; Susan Naylor; OT Nguyen; Sylvie Rouquier; T Smith; D J Wong; J Youngblom; Ger van den Engh
Members of the olfactory receptor gene family are contained in large blocks of DNA duplicated polymorphically near the ends of human chromosomes.
Human molecular genetics 1998;7(1):13-26.
1997: Linheng Li; Ian D Krantz; Y Deng; Anna Genin; AB Banta; Colin C Collins; M Qi; Barbara J Trask; Wen-Lin Kuo; JF Cochran; T Costa; M E Pierpont; Elizabeth B Rand; David A Piccoli; Leroy Hood; Nancy B Spinner
Alagille syndrome is caused by mutations in human Jagged1, which encodes a ligand for Notch1.
Nature genetics 1997;16(3):243-51.
1997: S Hwang; Wen-Lin Kuo; JF Cochran; R C Guzman; T Tsukamoto; G Bandyopadhyay; Kenneth Myambo; Colin C Collins
Assignment of HMAT1, the human homolog of the murine mammary transforming gene (MAT1) associated with tumorigenesis, to 1q21.1, a region frequently gained in human breast cancers.
Genomics 1997;42(3):540-2.
1997: Daniel Polikoff; Wen-Lin Kuo; JF Cochran; M Wernick; David Kowbel; Kenneth Myambo; Colin C Collins
Assignment of protease, serine-like 1 (PRSSL1) to human chromosome 19q13 by in situ hybridization and radiation hybrid mapping.
Cytogenetics and cell genetics 1997;79(1-2):147-8.
1997: Colin Collins; Jan Nehlin; J D Stubbs; David Kowbel; Wen-Lin Kuo; G Parry
Mapping of a newly discovered human gene homologous to the apoptosis associated-murine mammary protein, MFG-E8, to chromosome 15q25.
Genomics 1997;39(1):117-8.
1996: Pius Brzoska; H Chen; N A Levin; Wen-Lin Kuo; Colin Collins; K K Fu; Joe Gray; M F Christman
Cloning, mapping, and in vivo localization of a human member of the PKCI-1 protein family (PRKCNH1).
Genomics 1996;36(1):151-6.
1996: Tonghui Ma; Baoxue Yang; Wen-Lin Kuo; Alan S Verkman
cDNA cloning and gene structure of a novel water channel expressed exclusively in human kidney: evidence for a gene cluster of aquaporins at chromosome locus 12q13.
Genomics 1996;35(3):543-50.
1996: M Kahn; K Ishii; Wen-Lin Kuo; M Piper; A Connolly; Y P Shi; R Wu; C C Lin; Shaun R Coughlin
Conserved structure and adjacent location of the thrombin receptor and protease-activated receptor 2 genes define a protease-activated receptor gene cluster.
Molecular medicine (Cambridge, Mass.) 1996;2(3):349-57.
1995: T Stokke; Colin Collins; Wen-Lin Kuo; David Kowbel; F Shadravan; M Tanner; Anne Kallioniemi; Olli Kallioniemi; Daniel Pinkel; L Deaven
A physical map of chromosome 20 established using fluorescence in situ hybridization and digital image analysis.
Genomics 1995;26(1):134-7.
1995: Wen-Lin Kuo; D W Stafford; J Cruces; Joe Gray; J Solera
Chromosomal localization of the gamma-glutamyl carboxylase gene at 2p12.
Genomics 1995;25(3):746-8.
1995: M Sakamoto; Daniel Pinkel; L Mascio; Damir Sudar; D Peters; Wen-Lin Kuo; K Yamakawa; Y Nakamura; Harry A Drabkin; Z Jericevic
Semiautomated DNA probe mapping using digital imaging microscopy: II. System performance.
Cytometry 1995;19(1):60-9.
1995: L N Mascio; P W Verbeek; Damir Sudar; Wen-Lin Kuo; Joe Gray
Semiautomated DNA probe mapping using digital imaging microscopy: I. System development.
Cytometry 1995;19(1):51-9.
1994: MM Tanner; Mika Tirkkonen; Anne Kallioniemi; Colin Collins; T Stokke; Ritva Karhu; David Kowbel; F Shadravan; M Hintz; Wen-Lin Kuo
Increased copy number at 20q13 in breast cancer: defining the critical region and exclusion of candidate genes.
Cancer research 1994;54(16):4257-60.
1994: D R Schott; J N Chang; G Deng; W Kurisu; Wen-Lin Kuo; Joe Gray; HS Smith
A candidate tumor suppressor gene in human breast cancers.
Cancer research 1994;54(6):1393-6.
1993: J C Gingrich; S R Lowry; Wen-Lin Kuo; Joe Gray; C L Smith; C R Cantor
Cloning and characterization of EagI YACs from human chromosome 21.
Genomics 1993;15(1):228-30.
1991: Colin Collins; Wen-Lin Kuo; R Segraves; J Fuscoe; Daniel Pinkel; Joe Gray
Construction and characterization of plasmid libraries enriched in sequences from single human chromosomes.
Genomics 1991;11(4):997-1006.
1991: Wen-Lin Kuo; H Tenjin; R Segraves; Daniel Pinkel; M S Golbus; Joe Gray
Detection of aneuploidy involving chromosomes 13, 18, or 21, by fluorescence in situ hybridization (FISH) to interphase and metaphase amniocytes.
American journal of human genetics 1991;49(1):112-9.
1991: Joe Gray; J Lucas; Olli Kallioniemi; Anne Kallioniemi; Wen-Lin Kuo; T Straume; D Tkachuk; T Tenjin; Heinz-Ulrich G Weier; Daniel Pinkel
Applications of fluorescence in situ hybridization in biological dosimetry and detection of disease-specific chromosome aberrations.
Progress in clinical and biological research 1991;372():399-411.
1990: Joe Gray; Wen-Lin Kuo; J Liang; Daniel Pinkel; Ger van den Engh; Barbara J Trask; D Tkachuk; F Waldman; C Westbrook
Analytical approaches to detection and characterization of disease-linked chromosome aberrations.
Bone marrow transplantation 1990;6 Suppl 1():14-9.