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Seiki Kuramitsu

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Yukuhiko Asada; Akio Ebihara; Tetsuya Ishikawa; Eri Kaminuma; Norio Kobayashi; Yoshihiro Agari; Seiki Kuramitsu; Yoshinori Matsuura; Hisashi Mizutani; Hisashi Naitow; Koro Nishikata; Sayoko Shimoyama; Akeo Shinkai; Michihiro Sugahara; Tomoyuki Tanaka; Tetsuro Toyoda; Shigeyuki Yokoyama; Naoki Kunishima
Integrated database of information from structural genomics experiments.
Fumiaki Tomoike; Seiki Kuramitsu; Ryoji Masui
Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus.
Takuya Ouchi; Hikari Taka; Kento Takahashi; Takeo Tomita; Ayako Yoshida; Sonja-Verena Albers; Tsutomu Fujimura; Akira Horie; Saori Kosono; Seiki Kuramitsu; Tomohisa Kuzuyama; Kerstin Lassak; Ryoji Masui; Reiko Mineki; Hiromi Nishida; Chiharu Nishiyama; Makoto Nishiyama
Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.

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All Publications

2013: Yukuhiko Asada; Akio Ebihara; Tetsuya Ishikawa; Eri Kaminuma; Norio Kobayashi; Yoshihiro Agari; Seiki Kuramitsu; Yoshinori Matsuura; Hisashi Mizutani; Hisashi Naitow; Koro Nishikata; Sayoko Shimoyama; Akeo Shinkai; Michihiro Sugahara; Tomoyuki Tanaka; Tetsuro Toyoda; Shigeyuki Yokoyama; Naoki Kunishima
Integrated database of information from structural genomics experiments.
Acta crystallographica. Section D, Biological crystallography 2013;69(Pt 5):914-9.
2013: Fumiaki Tomoike; Seiki Kuramitsu; Ryoji Masui
Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus.
Extremophiles : life under extreme conditions 2013;17(3):505-14.
2013: Takuya Ouchi; Hikari Taka; Kento Takahashi; Takeo Tomita; Ayako Yoshida; Sonja-Verena Albers; Tsutomu Fujimura; Akira Horie; Saori Kosono; Seiki Kuramitsu; Tomohisa Kuzuyama; Kerstin Lassak; Ryoji Masui; Reiko Mineki; Hiromi Nishida; Chiharu Nishiyama; Makoto Nishiyama
Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.
Nature chemical biology 2013;9(4):277-83.
2013: Aribam Swarmistha Devi; Akio Ebihara; Thirumananseri Kumarevel; Seiki Kuramitsu; Shigeyuki Yokoyama; Karthe Ponnuraj
Crystal structure of type I 3-dehydroquinate dehydratase of Aquifex aeolicus suggests closing of active site flap is not essential for enzyme action.
Biochemical and biophysical research communications 2013;432(2):350-4.
2013: Preethi Ragunathan; Shigeyuki Yokoyama; Thirumananseri Kumarevel; Seiki Kuramitsu; Gokul Raghunath; Karthe Ponnuraj
Crystallization, characterization and preliminary X-ray crystallographic analysis of GK2848, a putative carbonic anhydrase of Geobacillus kaustophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2013;69(Pt 2):162-4.
2013: Kenji Fukui; Atsuhiro Shimada; Shigeyuki Yokoyama; Yoshitaka Bessho; Seiki Kuramitsu
Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR).
International journal of molecular sciences 2013;14(3):6436-53.
2012: Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
The role of the PHP domain associated with DNA polymerase X from Thermus thermophilus HB8 in base excision repair.
DNA repair 2012;11(11):906-14.
2012: Kwang Kim; Ryoji Masui; Hiroki Okanishi; Norikazu Ueyama; Akira Harada; Seiki Kuramitsu
Whole-cell proteome reference maps of an extreme thermophile, Thermus thermophilus HB8.
Proteomics 2012;12(19-20):3063-8.
2012: Yoshihiro Agari; Seiki Kuramitsu; Keiko Sakamoto; Akeo Shinkai
Transcriptional repression mediated by a TetR family protein, PfmR, from Thermus thermophilus HB8.
Journal of bacteriology 2012;194(17):4630-41.
2012: Yoshio Takahata; Ryoji Masui; Masaaki Miyamoto; Yota Iio; Masao Inoue; Yasushi Ishihama; Kwang Kim; Seiki Kuramitsu
Close proximity of phosphorylation sites to ligand in the phosphoproteome of the extreme thermophile Thermus thermophilus HB8.
Proteomics 2012;12(9):1414-30.
2012: Yoshihiro Agari; Seiki Kuramitsu; Akeo Shinkai
X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from Thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule.
Proteins 2012;80(5):1490-4.
2012: Ramya Sundaresan; Shigeyuki Yokoyama; Thirumananseri Kumarevel; Seiki Kuramitsu; Preethi Ragunathan; Karthe Ponnuraj
The structure of putative N-acetyl glutamate kinase from Thermus thermophilus reveals an intermediate active site conformation of the enzyme.
Biochemical and biophysical research communications 2012;420(3):692-7.
2012: Shuhei Nakane; Noriko Nakagawa; Hirohito Ishikawa; Seiki Kuramitsu; Ryoji Masui
The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA.
Journal of molecular biology 2012;417(3):179-96.
2012: Toshiko Tanaka; Akeo Shinkai; Kwang Kim; Seiki Kuramitsu; Ryoji Masui; Ryosuke Mega; Noriko Nakagawa
A non-cold-inducible cold shock protein homolog mainly contributes to translational control under optimal growth conditions.
The FEBS journal 2012;279(6):1014-29.
2012: Yoshihiro Agari; Seiki Kuramitsu; Akeo Shinkai
Crystal structure of hypothetical protein TTHB210, controlled by the σ(E) /anti-σ(E) regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer.
Proteins 2012;80(3):958-62.
2011: Shuhei Nakane; Taisuke Wakamatsu; Seiki Kuramitsu; Ryoji Masui; Kenji Fukui
In vivo, in vitro, and x-ray crystallographic analyses suggest the involvement of an uncharacterized triose-phosphate isomerase (TIM) barrel protein in protection against oxidative stress.
The Journal of biological chemistry 2011;286(48):41636-46.
2011: Hitoshi Iino; Kwang Kim; Atsuhiro Shimada; Ryoji Masui; Seiki Kuramitsu; Kenji Fukui
Characterization of C- and N-terminal domains of Aquifex aeolicus MutL endonuclease: N-terminal domain stimulates the endonuclease activity of C-terminal domain in a zinc-dependent manner.
Bioscience reports 2011;31(5):309-22.
2011: Keiko Sakamoto; Yoshihiro Agari; Seiki Kuramitsu; Akeo Shinkai
Phenylacetyl coenzyme A is an effector molecule of the TetR family transcriptional repressor PaaR from Thermus thermophilus HB8.
Journal of bacteriology 2011;193(17):4388-95.
2011: Hitoshi Iino; Nobutaka Shimizu; Akio Ebihara; Kenji Fukui; Masaru Goto; Ken Hirotsu; Seiki Kuramitsu
Crystal structure of the tandem-type universal stress protein TTHA0350 from Thermus thermophilus HB8.
Journal of biochemistry 2011;150(3):295-302.
2011: Rihito Morita; Noriko Nakagawa; Toshihiro Ohta; Hiromasa Ohyama; Akeo Shinkai; Yoshihiro Agari; Kenji Fukui; Hisahiro Hishinuma; Seiki Kuramitsu; Ryosuke Mega; Ryoji Masui
An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response.
Journal of biochemistry 2011;150(3):327-39.
2011: Yoshihiro Agari; Seiki Kuramitsu; Keiko Sakamoto; Kazuko Agari; Akeo Shinkai
TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation.
Microbiology (Reading, England) 2011;157(Pt 6):1589-601.
2011: Fumiaki Tomoike; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
A single amino acid limits the substrate specificity of Thermus thermophilus uridine-cytidine kinase to cytidine.
Biochemistry 2011;50(21):4597-607.
2011: Ryuichi Asano; Hirohito Ishikawa; Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA.
Acta crystallographica. Section D, Biological crystallography 2011;67(Pt 3):149-55.
2011: Taisuke Wakamatsu; Kwang Kim; Yuri Uemura; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Role of RecJ-like protein with 5'-3' exonuclease activity in oligo(deoxy)nucleotide degradation.
The Journal of biological chemistry 2011;286(4):2807-16.
2011: Kenji Fukui; Seiki Kuramitsu
Structure and Function of the Small MutS-Related Domain.
Molecular biology international 2011;2011():691735.
2011: Kwang Kim; Seiki Kuramitsu; Ryoji Masui; Joong-Jae Kim; Moon-Hee Sung
A commensal symbiotic interrelationship for the growth of Symbiobacterium toebii with its partner bacterium, Geobacillus toebii.
BMC research notes 2011;4():437.
2011: Shankar Prasad Kanaujia; Jeyaraman Jeyakanthan; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms.
Acta crystallographica. Section F, Structural biology and crystallization communications 2011;67(Pt 1):2-16.
2010: Yoshihiro Agari; Seiki Kuramitsu; Akeo Shinkai
Identification of novel genes regulated by the oxidative stress-responsive transcriptional activator SdrP in Thermus thermophilus HB8.
FEMS microbiology letters 2010;313(2):127-34.
2010: Alexander K Goroncy; Kazutaka Murayama; Mikako Shirouzu; Seiki Kuramitsu; Takanori Kigawa; Shigeyuki Yokoyama
NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes.
Journal of structural and functional genomics 2010;11(4):247-56.
2010: Tomoyuki Tanaka; Hideaki Niwa; Katsuhide Yutani; Seiki Kuramitsu; Shigeyuki Yokoyama; Thirumananseri Kumarevel
Crystal structure of TTHA0061, an uncharacterized protein from Thermus thermophilus HB8, reveals a novel fold.
Biochemical and biophysical research communications 2010;400(2):258-64.
2010: Atsuhiro Shimada; Ryoji Masui; Noriko Nakagawa; Yoshio Takahata; Kwang Kim; Seiki Kuramitsu; Kenji Fukui
A novel single-stranded DNA-specific 3'-5' exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways.
Nucleic acids research 2010;38(17):5692-705.
2010: Ryosuke Mega; Miho Manzoku; Akeo Shinkai; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Very rapid induction of a cold shock protein by temperature downshift in Thermus thermophilus.
Biochemical and biophysical research communications 2010;399(3):336-40.
2010: Mayumi Kanagawa; Seiki Baba; Akio Ebihara; Akeo Shinkai; Ken Hirotsu; Ryosuke Mega; Kwang Kim; Seiki Kuramitsu; Gen-ichi Sampei; Gota Kawai
Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2010;66(Pt 8):893-8.
2010: Atsuhiro Shimada; Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii.
Proteins 2010;78(10):2399-402.
2010: Yuya Nishida; Hirohito Ishikawa; Seiki Baba; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii.
Proteins 2010;78(10):2395-8.
2010: Shankar Prasad Kanaujia; Jeyaraman Jeyakanthan; Noriko Nakagawa; Sathyaramya Balasubramaniam; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Structures of apo and GTP-bound molybdenum cofactor biosynthesis protein MoaC from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2010;66(Pt 7):821-33.
2010: Keiko Sakamoto; Yoshihiro Agari; Kazuko Agari; Seiki Kuramitsu; Akeo Shinkai
Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8.
Microbiology (Reading, England) 2010;156(Pt 7):1993-2005.
2010: Jeyaraman Jeyakanthan; Randy M Drevland; Dasara Raju Gayathri; devadasan velmurugan; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; David E Graham
Substrate specificity determinants of the methanogen homoaconitase enzyme: structure and function of the small subunit.
Biochemistry 2010;49(12):2687-96.
2010: Taisuke Wakamatsu; Yoshiaki Kitamura; Yutaro Kotera; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Structure of RecJ exonuclease defines its specificity for single-stranded DNA.
The Journal of biological chemistry 2010;285(13):9762-9.
2010: Jeyaraman Jeyakanthan; Subbiah Thamotharan; Santosh Panjikar; Yoshiaki Kitamura; Noriko Nakagawa; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama
Expression, purification and X-ray analysis of 1,3-propanediol dehydrogenase (Aq_1145) from Aquifex aeolicus VF5.
Acta crystallographica. Section F, Structural biology and crystallization communications 2010;66(Pt 2):184-6.
2010: Kavyashree Manjunath; Jeyaraman Jeyakanthan; Noriko Nakagawa; Akeo Shinkai; Masato Yoshimura; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of the putative SAICAR synthetase (PH0239) from Pyrococcus horikoshii OT3.
Acta crystallographica. Section F, Structural biology and crystallization communications 2010;66(Pt 2):180-3.
2010: Jeyaraman Jeyakanthan; Shankar Prasad Kanaujia; Yuya Nishida; Noriko Nakagawa; Surendran Praveen; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Free and ATP-bound structures of Ap4A hydrolase from Aquifex aeolicus V5.
Acta crystallographica. Section D, Biological crystallography 2010;66(Pt 2):116-24.
2010: Yoshihiro Agari; Keiko Sakamoto; Masatada Tamakoshi; Tairo Oshima; Seiki Kuramitsu; Akeo Shinkai
Transcription profile of Thermus thermophilus CRISPR systems after phage infection.
Journal of molecular biology 2010;395(2):270-81.
2010: Rihito Morita; Shuhei Nakane; Atsuhiro Shimada; Masao Inoue; Hitoshi Iino; Taisuke Wakamatsu; Kenji Fukui; Noriko Nakagawa; Ryoji Masui; Seiki Kuramitsu
Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems.
Journal of nucleic acids 2010;2010():179594.
2009: Balasundaram Padmanabhan; Yoshitaka Bessho; Akio Ebihara; Svetlana V Antonyuk; Mark J Ellis; Richard W Strange; Seiki Kuramitsu; Nobuhisa Watanabe; S Samar Hasnain; Shigeyuki Yokoyama
Structure of putative 4-amino-4-deoxychorismate lyase from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 12):1234-9.
2009: Ryoichi Arai; Kazutaka Murayama; Tomomi Uchikubo-Kamo; Madoka Nishimoto; Mitsutoshi Toyama; Seiki Kuramitsu; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
Journal of structural biology 2009;168(3):575-81.
2009: Jeyaraman Jeyakanthan; Subbiah Thamotharan; devadasan velmurugan; Vaijayanthimala Surya Narayna Rao; Shanthi Nagarajan; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama
New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK).
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 10):978-86.
2009: Toshiaki Hosaka; Kazutaka Murayama; Miyuki Kato-Murayama; Akiko Urushibata; Ryogo Akasaka; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 8):767-76.
2009: Fumiaki Tomoike; Taisuke Wakamatsu; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.
Proteins 2009;76(1):244-8.
2009: Takushi Ooga; Yoshiaki Ohashi; Seiki Kuramitsu; Yoshinori Koyama; Masaru Tomita; Tomoyoshi Soga; Ryoji Masui
Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus.
The Journal of biological chemistry 2009;284(23):15549-56.
2009: Ryosuke Mega; Naoyuki Kondo; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Two dNTP triphosphohydrolases from Pseudomonas aeruginosa possess diverse substrate specificities.
The FEBS journal 2009;276(12):3211-21.
2009: Keiko Sakamoto; Yoshihiro Agari; Kazuko Agari; Shigeyuki Yokoyama; Seiki Kuramitsu; Akeo Shinkai
X-ray crystal structure of a CRISPR-associated RAMP module [corrected] Cmr5 protein [corrected] from Thermus thermophilus HB8.
Proteins 2009;75(2):528-32.
2009: Shuhei Nakane; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity.
Nucleic acids research 2009;37(6):2037-52.
2009: Kensaku Sakamoto; Kazutaka Murayama; Kenji Oki; Fumie Iraha; Miyuki Kato-Murayama; Masahiro Takahashi; Kazumasa Ohtake; Takatsugu Kobayashi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography.
Structure (London, England : 1993) 2009;17(3):335-44.
2009: Naoyuki Kondo; Akio Ebihara; Heng Ru; Seiki Kuramitsu; Aikichi Iwamoto; Zihe Rao; Zene Matsuda
Thermus thermophilus-derived protein tags that aid in preparation of insoluble viral proteins.
Analytical biochemistry 2009;385(2):278-85.
2008: Yoshihiro Agari; Shigeyuki Yokoyama; Seiki Kuramitsu; Akeo Shinkai
X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8.
Proteins 2008;73(4):1063-7.
2008: Kenji Fukui; Noriko Nakagawa; Yoshiaki Kitamura; Yuya Nishida; Ryoji Masui; Seiki Kuramitsu
Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression.
The Journal of biological chemistry 2008;283(48):33417-27.
2008: Keiko Sakamoto; Yoshihiro Agari; Shigeyuki Yokoyama; Seiki Kuramitsu; Akeo Shinkai
Functional identification of an anti-sigmaE factor from Thermus thermophilus HB8.
Gene 2008;423(2):153-9.
2008: Preethi Ragunathan; Thirumananseri Kumarevel; Yoshihiro Agari; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Karthe Ponnuraj
Crystal structure of ST2348, a CBS domain protein, from hyperthermophilic archaeon Sulfolobus tokodaii.
Biochemical and biophysical research communications 2008;375(1):124-8.
2008: Jeyaraman Jeyakanthan; Sarani Rangarajan; P Mridula; Shankar Prasad Kanaujia; Yoshitsugu Shiro; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Observation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 10):1012-9.
2008: Yoshihiro Agari; Aiko Kashihara; Shigeyuki Yokoyama; Seiki Kuramitsu; Akeo Shinkai
Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.
Molecular microbiology 2008;70(1):60-75.
2008: Rihito Morita; Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8.
Proteins 2008;73(1):259-64.
2008: Rihito Morita; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein.
Journal of biochemistry 2008;144(2):267-77.
2008: Yuzuru Itoh; Shun-ichi Sekine; Chizu Kuroishi; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
RNA biology 2008;5(3):169-77.
2008: Hiromi Yoshida; Mitsugu Yamada; Seiki Kuramitsu; Shigehiro Kamitori
Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472).
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 7):589-92.
2008: Hitoshi Iino; Hisashi Naitow; Yuki Nakamura; Noriko Nakagawa; Yoshihiro Agari; Mayumi Kanagawa; Akio Ebihara; Akeo Shinkai; Mitsuaki Sugahara; Masashi Miyano; Nobuo Kamiya; Shigeyuki Yokoyama; Ken Hirotsu; Seiki Kuramitsu
Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 6):487-91.
2008: Akio Ebihara; Miho Manzoku; Hitoshi Iino; Mayumi Kanagawa; Akeo Shinkai; Shigeyuki Yokoyama; Seiki Kuramitsu
Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins.
Proteins 2008;71(4):2097-101.
2008: Makoto Ihara; Toshihide Okajima; Atsuko Yamashita; Takuma Oda; Koichi Hirata; Hisashi Nishiwaki; Takako Morimoto; Miki Akamatsu; Yuji Ashikawa; Shun'ichi Kuroda; Ryosuke Mega; Seiki Kuramitsu; David B Sattelle; Kazuhiko Matsuda
Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin.
Invertebrate neuroscience : IN 2008;8(2):71-81.
2008: Tadashi Nakai; Seiki Kuramitsu; Nobuo Kamiya
Structural bases for the specific interactions between the E2 and E3 components of the Thermus thermophilus 2-oxo acid dehydrogenase complexes.
Journal of biochemistry 2008;143(6):747-58.
2008: Kenji Fukui; Masami Nishida; Noriko Nakagawa; Ryoji Masui; Seiki Kuramitsu
Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL.
The Journal of biological chemistry 2008;283(18):12136-45.
2008: Shigeyuki Yokoyama; Takanori Kigawa; Mikako Shirouzu; Masashi Miyano; Seiki Kuramitsu
[RIKEN structural genomics/proteomics initiative].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2008;53(5):632-7.
2008: Seiki Kuramitsu; Ryoji Masui
[Structural proteomics of metabolism-related proteins].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2008;53(5):604-7.
2008: Joong-Jae Kim; Ryoji Masui; Seiki Kuramitsu; Jin-Ho Seo; Kwang Kim; Moon-Hee Sung
Characterization of growth-supporting factors produced by Geobacillus toebii for the commensal thermophile Symbiobacterium toebii.
Journal of microbiology and biotechnology 2008;18(3):490-6.
2008: Naoyuki Kondo; Takashi Nishikubo; Taisuke Wakamatsu; Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus.
Extremophiles : life under extreme conditions 2008;12(2):217-23.
2008: Yoshihiro Agari; Shinya Sato; Taisuke Wakamatsu; Yoshitaka Bessho; Akio Ebihara; Shigeyuki Yokoyama; Seiki Kuramitsu; Akeo Shinkai
X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7.
Proteins 2008;70(3):1108-11.
2008: Sarani Rangarajan; Jeyaraman Jeyakanthan; Palappetty Mridula; Keiko Sakamoto; Yoshiaki Kitamura; Yoshihiro Agari; Akeo Shinkai; Akio Ebihara; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Crystallization and preliminary crystallographic studies of L30e, a ribosomal protein from Methanocaldococcus jannaschii (MJ1044).
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 2):102-4.
2008: Taisuke Wakamatsu; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8.
Journal of bacteriology 2008;190(3):1108-17.
2008: Hiroshi Isobe; Syusuke Yamanaka; Seiki Kuramitsu; Kizashi Yamaguchi
Regulation mechanism of spin-orbit coupling in charge-transfer-induced luminescence of imidazopyrazinone derivatives.
Journal of the American Chemical Society 2008;130(1):132-49.
2007: Yong Xie; Chie Takemoto; Seiichiro Kishishita; Tomomi Uchikubo-Kamo; Kazutaka Murayama; Lirong Chen; Zhi Jie Liu; Bi-Cheng Wang; Miho Manzoku; Akio Ebihara; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 12):993-7.
2007: Akeo Shinkai; Naomi Ohbayashi; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Identification of promoters recognized by RNA polymerase-sigmaE holoenzyme from Thermus thermophilus HB8.
Journal of bacteriology 2007;189(23):8758-64.
2007: Hiromichi Kosaka; Jun Hoseki; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.
Journal of molecular biology 2007;373(4):839-50.
2007: Noboru Nakano; Thirumananseri Kumarevel; Emiko Matsunaga; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama
Purification, crystallization and preliminary X-ray crystallographic analysis of ST1022, a putative member of the Lrp/AsnC family of transcriptional regulators isolated from Sulfolobus tokodaii strain 7.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 11):964-6.
2007: Yoshitaka Bessho; Rie Shibata; Shun-ichi Sekine; Kazutaka Murayama; Kyoko Higashijima; Chie Hori-Takemoto; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(20):8293-8.
2007: Shankar Prasad Kanaujia; Chellamuthu Vasuki Ranjani; Jeyaraman Jeyakanthan; Masami Nishida; Yoshiaki Kitamura; Seiki Baba; Akio Ebihara; Nobutaka Shimizu; Noriko Nakagawa; Akeo Shinkai; Masaki Yamamoto; Seiki Kuramitsu; Yoshitsugu Shiro; Kanagaraj Sekar; Shigeyuki Yokoyama
Preliminary X-ray crystallographic study of glucose dehydrogenase from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 5):446-8.
2007: Akeo Shinkai; Satoshi Kira; Noriko Nakagawa; Aiko Kashihara; Seiki Kuramitsu; Shigeyuki Yokoyama
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8.
Journal of bacteriology 2007;189(10):3891-901.
2007: Akihiro Ito; Taka-Aki Okamura; Ken Masui; Maki Kaneko; Ryoji Masui; Kojiro Ake; Seiki Kuramitsu; Minoru Yamaguchi; Hiroki Kuyama; Eiji Ando; Shigemi Norioka; Takashi Nakazawa; Susumu Tsunasawa; Hitoshi Yamamoto; Norikazu Ueyama
High sequence-coverage detection of proteolytic peptides using a bis(terpyridine)ruthenium(II) complex.
The Analyst 2007;132(4):358-64.
2007: Shankar Prasad Kanaujia; Chellamuthu Vasuki Ranjani; Jeyaraman Jeyakanthan; Miwa Ohmori; Kazuko Agari; Yoshiaki Kitamura; Seiki Baba; Akio Ebihara; Akeo Shinkai; Seiki Kuramitsu; Yoshitsugu Shiro; Kanagaraj Sekar; Shigeyuki Yokoyama
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of molybdopterin synthase from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 4):324-6.
2007: Nobuo Okazaki; Maki Kumei; Miho Manzoku; Seiki Kuramitsu; Mikako Shirouzu; Akeo Shinkai; Shigeyuki Yokoyama
Structure of a UPF0150-family protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 3):173-7.
2007: Seiko Yoshikawa; Ryoichi Arai; Yukiko Kinoshita; Tomomi Uchikubo-Kamo; Taisuke Wakamatsu; Ryogo Akasaka; Ryoji Masui; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 3):357-65.
2007: Shankar Prasad Kanaujia; Chellamuthu Vasuki Ranjani; Jeyaraman Jeyakanthan; Seiki Baba; Chizu Kuroishi; Akio Ebihara; Akeo Shinkai; Seiki Kuramitsu; Yoshitsugu Shiro; Kanagaraj Sekar; Shigeyuki Yokoyama
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of DHNA synthetase from Geobacillus kaustophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 2):103-5.
2007: Naoyuki Kondo; Noriko Nakagawa; Akio Ebihara; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Shigeyuki Yokoyama; Seiki Kuramitsu; Ryoji Masui
Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 2):230-9.
2007: Kenji Fukui; Yoshio Takahata; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry.
Nucleic acids research 2007;35(15):e100.
2007: Akihiro Ito; Taka-aki Okamura; Hitoshi Yamamoto; Norikazu Ueyama; Minoru Yamaguchi; Hiroki Kuyama; Eiji Ando; Susumu Tsunasawa; Kojiro Ake; Ryoji Masui; Seiki Kuramitsu; Takashi Nakazawa; Shigemi Norioka
Simultaneous detection of N-terminal fragment ions in a protein mixture using a ruthenium(II) complex.
Rapid communications in mass spectrometry : RCM 2007;21(16):2647-53.
2007: Kenji Fukui; Hiromichi Kosaka; Seiki Kuramitsu; Ryoji Masui
Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain.
Nucleic acids research 2007;35(3):850-60.
2007: Shankar Prasad Kanaujia; Chellamuthu Vasuki Ranjani; Jeyaraman Jeyakanthan; Seiki Baba; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Masami Nishida; Akio Ebihara; Akeo Shinkai; Seiki Kuramitsu; Yoshitsugu Shiro; Kanagaraj Sekar; Shigeyuki Yokoyama
Crystallization and preliminary crystallographic analysis of molybdenum-cofactor biosynthesis protein C from Thermus thermophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 1):27-9.
2006: Takuya B Hiyama; Min Zhao; Yu Kitago; Min Yao; Shun-ichi Sekine; Takaho Terada; Chizu Kuroishi; Zhi-Jie Liu; John P Rose; Seiki Kuramitsu; Mikako Shirouzu; Nobuhisa Watanabe; Shigeyuki Yokoyama; Isao Tanaka; Bi-Cheng Wang
Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
Journal of structural and functional genomics 2006;7(3-4):119-29.
2006: Hiroshi M Sasaki; Shun-ichi Sekine; Toru Sengoku; Ryuya Fukunaga; Motoyuki Hattori; Yukiko Utsunomiya; Chizu Kuroishi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(40):14744-9.
2006: Hirohito Ishikawa; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily.
Journal of biochemistry 2006;140(4):535-42.
2006: Noboru Nakano; Nobuo Okazaki; Shinya Satoh; Koji Takio; Seiki Kuramitsu; Akeo Shinkai; Shigeyuki Yokoyama
Structure of the stand-alone RAM-domain protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 9):855-60.
2006: Wataru Iwasaki; Shun-ichi Sekine; Chizu Kuroishi; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.
Journal of molecular biology 2006;360(2):329-42.
2006: Xuesong Dong; Yoshitaka Bessho; Rie Shibata; Madoka Nishimoto; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.
RNA biology 2006;3(3):115-22.
2006: Motoyuki Hattori; Eiichi Mizohata; Ayako Tatsuguchi; Rie Shibata; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.
Proteins 2006;64(1):284-7.
2006: Kaori Ito; Ryoichi Arai; Emiko Fusatomi; Tomomi Kamo-Uchikubo; Shin-Ichi Kawaguchi; Ryogo Akasaka; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD.
Protein science : a publication of the Protein Society 2006;15(5):1187-92.
2006: Eiji Inagaki; Keiko Sakamoto; Naomi Obayashi; Takaho Terada; Mikako Shirouzu; Yoshitaka Bessho; Chizu Kuroishi; Seiki Kuramitsu; Akeo Shinkai; Shigeyuki Yokoyama
Expression, purification, crystallization and preliminary X-ray diffraction analysis of galactokinase from Pyrococcus horikoshii.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 2):169-71.
2006: Mitsuo Kuratani; Hiroaki Sakai; Masahiro Takahashi; Tatsuo Yanagisawa; Takatsugu Kobayashi; Kazutaka Murayama; Lirong Chen; Zhi-Jie Liu; Bi-Cheng Wang; Chizu Kuroishi; Seiki Kuramitsu; Takaho Terada; Yoshitaka Bessho; Mikako Shirouzu; Shun-ichi Sekine; Shigeyuki Yokoyama
Crystal structures of tyrosyl-tRNA synthetases from Archaea.
Journal of molecular biology 2006;355(3):395-408.
2005: Takashi Nishikubo; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon.
Journal of biotechnology 2005;120(4):341-6.
2005: Nobukazu Nameki; Tatsuhiko Someya; Satoshi Okano; Reiko Suemasa; Michiko Kimoto; Kyoko Hanawa-Suetsugu; Takaho Terada; Mikako Shirouzu; Ichiro Hirao; Hiroshi Takaku; Hyouta Himeno; Akira Muto; Seiki Kuramitsu; Shigeyuki Yokoyama; Gota Kawai
Interaction analysis between tmRNA and SmpB from Thermus thermophilus.
Journal of biochemistry 2005;138(6):729-39.
2005: Motoyuki Hattori; Eiichi Mizohata; Miho Manzoku; Yoshitaka Bessho; Kazutaka Murayama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8.
Proteins 2005;61(4):1117-20.
2005: Takumi Ueda; Akira Kato; Seiki Kuramitsu; Hiroaki Terasawa; Ichio Shimada
Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27.
The Journal of biological chemistry 2005;280(43):36237-43.
2005: Akihiro Ito; Taka-Aki Okamura; Hitoshi Yamamoto; Norikazu Ueyama; Kojiro Ake; Ryoji Masui; Seiki Kuramitsu; Susumu Tsunasawa
Distinction of Leu and Ile Using a Ruthenium(II) complex by MALDI-LIFT-TOF/TOF-MS analysis.
Analytical chemistry 2005;77(20):6618-24.
2005: Augen A Pioszak; Kazutaka Murayama; Noriko Nakagawa; Akio Ebihara; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 10):867-74.
2005: Neratur K Lokanath; Noriyasu Ohshima; Koji Takio; Ikuya Shiromizu; Chizu Kuroishi; Nobuo Okazaki; Seiki Kuramitsu; Shigeyuki Yokoyama; Masashi Miyano; Naoki Kunishima
Crystal structure of novel NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8.
Journal of molecular biology 2005;352(4):905-17.
2005: Naoki Kunishima; Yukuhiko Asada; Mayumi Sugahara; Jun Ishijima; Yuichi Nodake; Mitsuaki Sugahara; Masashi Miyano; Seiki Kuramitsu; Shigeyuki Yokoyama; Michihiro Sugahara
A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI.
Journal of molecular biology 2005;352(1):212-28.
2005: Shigeo Yoshinari; Shinji Fujita; Ryoji Masui; Seiki Kuramitsu; Shin-ichi Yokobori; Kiyoshi Kita; Yoh-ichi Watanabe
Functional reconstitution of a crenarchaeal splicing endonuclease in vitro.
Biochemical and biophysical research communications 2005;334(4):1254-9.
2005: Yoko Tanaka; Noriko Nakagawa; Seiki Kuramitsu; Shigeyuki Yokoyama; Ryoji Masui
Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative.
Journal of biochemistry 2005;138(3):263-75.
2005: Takushi Ooga; Sachiko Yoshiba; Noriko Nakagawa; Seiki Kuramitsu; Ryoji Masui
Molecular mechanism of the Thermus thermophilus ADP-ribose pyrophosphatase from mutational and kinetic studies.
Biochemistry 2005;44(26):9320-9.
2005: Hiroshi Isobe; Yu Takano; Mitsutaka Okumura; Seiki Kuramitsu; Kizashi Yamaguchi
Mechanistic insights in charge-transfer-induced luminescence of 1,2-dioxetanones with a substituent of low oxidation potential.
Journal of the American Chemical Society 2005;127(24):8667-79.
2005: Ryoichi Arai; Madoka Nishimoto; Mitsutoshi Toyama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Conserved protein TTHA1554 from Thermus thermophilus HB8 binds to glutamine synthetase and cystathionine beta-lyase.
Biochimica et biophysica acta 2005;1750(1):40-7.
2005: Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.
The EMBO journal 2005;24(8):1523-36.
2005: Noriko Handa; Takaho Terada; Yukiko Doi-Katayama; Hiroshi Hirota; Jeremy R H Tame; Sam-Yong Park; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2005;14(4):1004-10.
2005: Shuhei Kimura; Kaori Ide; Aiko Kashihara; Makoto Kano; Mariko Hatakeyama; Ryoji Masui; Noriko Nakagawa; Shigeyuki Yokoyama; Seiki Kuramitsu; Akihiko Konagaya
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.
Bioinformatics (Oxford, England) 2005;21(7):1154-63.
2005: Masahiro Kato; Hitoshi Yamamoto; Taka-aki Okamura; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Norikazu Ueyama
Inhibition of Thermus thermophilus HB8 thioredoxin activity by platinum(II).
Dalton transactions (Cambridge, England : 2003) 2005;(6):1023-6.
2005: Mutsuko Kukimoto-Niino; Rie Shibata; Kazutaka Murayama; Hiroaki Hamana; Madoka Nishimoto; Yoshitaka Bessho; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution.
Protein science : a publication of the Protein Society 2005;14(3):823-7.
2005: Kazutaka Murayama; Mikako Shirouzu; Takaho Terada; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of TT1662 from Thermus thermophilus HB8: a member of the alpha/beta hydrolase fold enzymes.
Proteins 2005;58(4):982-4.
2005: Shigeo Yoshinari; Shinji Fujita; Ryoji Masui; Seiki Kuramitsu; Shin-ichi Yokobori; Kiyoshi Kita; Yoh-ichi Watanabe
Functional reconstitution of an archaeal splicing endonuclease in vitro.
Nucleic acids symposium series (2004) 2005;(49):103-4.
2005: Hiroaki Sakai; Hongfei Wang; Chie Takemoto-Hori; Tatsuya Kaminishi; Hiroto Yamaguchi; Yuki Kamewari; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
Journal of structural biology 2005;149(1):99-110.
2005: Azusa Seto; Kazutaka Murayama; Mitsutoshi Toyama; Akio Ebihara; Noriko Nakagawa; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8.
Proteins 2005;58(1):235-42.
2004: Mitsuhiro Nishimura; Takuya Yoshida; Mikako Shirouzu; Takaho Terada; Seiki Kuramitsu; Shigeyuki Yokoyama; Tadayasu Ohkubo; Yuji Kobayashi
Solution structure of ribosomal protein L16 from Thermus thermophilus HB8.
Journal of molecular biology 2004;344(5):1369-83.
2004: Takumi Ueda; Akira Kato; Yuuta Ogawa; Takuya Torizawa; Seiki Kuramitsu; Shigenori Iwai; Hiroaki Terasawa; Ichio Shimada
NMR study of repair mechanism of DNA photolyase by FAD-induced paramagnetic relaxation enhancement.
The Journal of biological chemistry 2004;279(50):52574-9.
2004: Seiichiro Kishishita; Ayako Tatsuguchi; Ryoko Ushikoshi-Nakayama; Takaho Terada; Seiki Kuramitsu; Sam-Yong Park; Jeremy R H Tame; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8.
Proteins 2004;57(4):883-7.
2004: Mutsuko Kukimoto-Niino; Kazutaka Murayama; Miyuki Kato-Murayama; Miki Idaka; Yoshitaka Bessho; Ayako Tatsuguchi; Ryoko Ushikoshi-Nakayama; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2004;13(11):3038-42.
2004: Neratur K Lokanath; Ikuya Shiromizu; Noriyasu Ohshima; Yuichi Nodake; Mitsuaki Sugahara; Shigeyuki Yokoyama; Seiki Kuramitsu; Masashi Miyano; Naoki Kunishima
Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 10):1816-23.
2004: Hongfei Wang; Chie Takemoto; Kazutaka Murayama; Hiroaki Sakai; Ayako Tatsuguchi; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2004;13(10):2806-10.
2004: Maki Kaneko; Ryoji Masui; Kojiro Ake; Yukihide Kousumi; Seiki Kuramitsu; Minoru Yamaguchi; Hiroki Kuyama; Eiji Ando; Shigemi Norioka; Takashi Nakazawa; Taka-Aki Okamura; Hitoshi Yamamoto; Norikazu Ueyama
Rapid and sensitive amino-acid sequencing of cloning Thermus thermophilus HB8 ferredoxin by proteomics.
Journal of proteome research 2004;3(5):983-7.
2004: Sachiko Yoshiba; Takushi Ooga; Noriko Nakagawa; Takehiko Shibata; Yorinao Inoue; Shigeyuki Yokoyama; Seiki Kuramitsu; Ryoji Masui
Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal.
The Journal of biological chemistry 2004;279(35):37163-74.
2004: Naoyuki Kondo; Seiki Kuramitsu; Ryoji Masui
Biochemical characterization of TT1383 from Thermus thermophilus identifies a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTP.
Journal of biochemistry 2004;136(2):221-31.
2004: Takuya Torizawa; Takumi Ueda; Seiki Kuramitsu; Kenichi Hitomi; Takeshi Todo; Shigenori Iwai; Kosuke Morikawa; Ichio Shimada
Investigation of the cyclobutane pyrimidine dimer (CPD) photolyase DNA recognition mechanism by NMR analyses.
The Journal of biological chemistry 2004;279(31):32950-6.
2004: Yuko Hisanaga; Hideo Ago; Noriko Nakagawa; Keisuke Hamada; Koh Ida; Masaki Yamamoto; Tetsuya Hori; Yasuhiro Arii; Mitsuaki Sugahara; Seiki Kuramitsu; Shigeyuki Yokoyama; Masashi Miyano
Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer.
The Journal of biological chemistry 2004;279(30):31717-26.
2004: Yusaku Hioki; Kyoko Ogasahara; Soo Jae Lee; Jichun Ma; Masami Ishida; Yuriko Yamagata; Yoshiki Matsuura; Motonori Ota; Mitsunori Ikeguchi; Seiki Kuramitsu; Katsuhide Yutani
The crystal structure of the tryptophan synthase beta subunit from the hyperthermophile Pyrococcus furiosus. Investigation of stabilization factors.
European journal of biochemistry / FEBS 2004;271(13):2624-35.
2004: Kyoko Hanawa-Suetsugu; Shun-ichi Sekine; Hiroaki Sakai; Chie Hori-Takemoto; Takaho Terada; Satoru Unzai; Jeremy R H Tame; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of elongation factor P from Thermus thermophilus HB8.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9595-600.
2004: Takayoshi Iwai; Seiki Kuramitsu; Ryoji Masui
The Nudix hydrolase Ndx1 from Thermus thermophilus HB8 is a diadenosine hexaphosphate hydrolase with a novel activity.
The Journal of biological chemistry 2004;279(21):21732-9.
2004: Takashi Wada; Mikako Shirouzu; Takaho Terada; Yuki Kamewari; Sam-Yong Park; Jeremy R H Tame; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8.
Proteins 2004;55(3):778-80.
2004: Yasuhiro Katsura; Mikako Shirouzu; Hiroto Yamaguchi; Ryuichiro Ishitani; Osamu Nureki; Seiki Kuramitsu; Hideyuki Hayashi; Shigeyuki Yokoyama
Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.
Proteins 2004;55(3):487-92.
2004: Tahir Tahirov; Eiji Inagaki; Noriyasu Ohshima; Tomoe Kitao; Chizu Kuroishi; Yoko Ukita; Koji Takio; Masanori Kobayashi; Seiki Kuramitsu; Shigeyuki Yokoyama; Masashi Miyano
Crystal structure of purine nucleoside phosphorylase from Thermus thermophilus.
Journal of molecular biology 2004;337(5):1149-60.
2004: Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Ligand-induced conformational changes and a reaction intermediate in branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8, as revealed by X-ray crystallography.
Journal of molecular biology 2004;337(4):1011-33.
2004: Mutsuko Kukimoto-Niino; Kazutaka Murayama; Mio Inoue; Takaho Terada; Jeremy R H Tame; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.
Journal of molecular biology 2004;337(3):761-70.
2004: Kenji Fukui; Ryoji Masui; Seiki Kuramitsu
Thermus thermophilus MutS2, a MutS paralogue, possesses an endonuclease activity promoted by MutL.
Journal of biochemistry 2004;135(3):375-84.
2004: Kazuya Nishio; Yuichi Nodake; Kensaku Hamada; Kyoko Suto; Noriko Nakagawa; Seiki Kuramitsu; Keiko Miura
Expression, purification, crystallization and preliminary X-ray studies of geranylgeranyl diphosphate synthase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 1):178-80.
2004: Hitomi Takahashi; Eiji Inagaki; Yayoi Fujimoto; Chizu Kuroishi; Yuichi Nodake; Yuki Nakamura; Fumio Arisaka; Katsuhide Yutani; Seiki Kuramitsu; Shigeyuki Yokoyama; Masaki Yamamoto; Masashi Miyano; Tahir Tahirov
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 1):97-104.
2003: Jun Hoseki; Akihiro Okamoto; Naoki Takada; Atsushi Suenaga; Noriyuki Futatsugi; Akihiko Konagaya; Makoto Taiji; Takato Yano; Seiki Kuramitsu; Hiroyuki Kagamiyama
Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution.
Biochemistry 2003;42(49):14469-75.
2003: Keisuke Hamada; Hideo Ago; Mitsuaki Sugahara; Yuichi Nodake; Seiki Kuramitsu; Masashi Miyano
Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi).
The Journal of biological chemistry 2003;278(49):49183-90.
2003: Neratur K Lokanath; Ikuya Shiromizu; Yuichi Nodake; Mitsuaki Sugahara; Shigeyuki Yokoyama; Seiki Kuramitsu; Masashi Miyano; Naoki Kunishima
Crystallization and preliminary X-ray crystallographic studies of NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 12):2294-6.
2003: Azusa Seto; Mikako Shirouzu; Takaho Terada; Kazutaka Murayama; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution.
Proteins 2003;53(3):768-71.
2003: Jun Hoseki; Akihiro Okamoto; Ryoji Masui; Takehiko Shibata; Yorinao Inoue; Shigeyuki Yokoyama; Seiki Kuramitsu
Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8.
Journal of molecular biology 2003;333(3):515-26.
2003: Shunsaku Takeishi; Noriko Nakagawa; Nobuko Maoka; Miho Kihara; Miki Moriguchi; Ryoji Masui; Seiki Kuramitsu
Crystallization and preliminary X-ray diffraction studies of nucleoside diphosphate kinase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1843-5.
2003: Sachiko Yoshiba; Noriko Nakagawa; Ryoji Masui; Takehiko Shibata; Yorinao Inoue; Shigeyuki Yokoyama; Seiki Kuramitsu
Overproduction, crystallization and preliminary diffraction data of ADP-ribose pyrophosphatase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1840-2.
2003: Hiroaki Sakai; Marina N Vassylyeva; Takanori Matsuura; Shun-ichi Sekine; Kazumi Gotoh; Makoto Nishiyama; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Dmitry G Vassylyev; Shigeyuki Yokoyama
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8.
Journal of molecular biology 2003;332(3):729-40.
2003: Marina N Vassylyeva; Hiroaki Sakai; Takanori Matsuura; Shun-ichi Sekine; Makoto Nishiyama; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Dmitry G Vassylyev; Shigeyuki Yokoyama
Cloning, expression, purification, crystallization and initial crystallographic analysis of the lysine-biosynthesis LysX protein from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 9):1651-2.
2003: Tadashi Nakai; Jun Ishijima; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 9):1610-8.
2003: Takashi Wada; Tomohisa Kuzuyama; Shinya Satoh; Seiki Kuramitsu; Shigeyuki Yokoyama; Satoru Unzai; Jeremy R H Tame; Sam-Yong Park
Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
The Journal of biological chemistry 2003;278(32):30022-7.
2003: Noriko Handa; Takaho Terada; Yuki Kamewari; Hiroaki Hamana; Jeremy R H Tame; Sam-Yong Park; Kengo Kinoshita; Motonori Ota; Haruki Nakamura; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2003;12(8):1621-32.
2003: Takashi Wada; Mikako Shirouzu; Takaho Terada; Yoshiko Ishizuka; Takayoshi Matsuda; Takanori Kigawa; Seiki Kuramitsu; Sam-Yong Park; Jeremy R H Tame; Shigeyuki Yokoyama
Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 7):1213-8.
2003: Miyuki Kato; Mikako Shirouzu; Takaho Terada; Hiroto Yamaguchi; Kazutaka Murayama; Hiroaki Sakai; Seiki Kuramitsu; Shigeyuki Yokoyama
Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8.
Journal of molecular biology 2003;329(5):903-11.
2003: Tatsuya Kaminishi; Hiroaki Sakai; Chie Takemoto-Hori; Takaho Terada; Noriko Nakagawa; Nobuko Maoka; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Crystallization and preliminary X-ray diffraction analysis of ribosomal protein L11 methyltransferase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 5):930-2.
2003: Tadashi Nakai; Noriko Nakagawa; Nobuko Maoka; Ryoji Masui; Seiki Kuramitsu; Nobuo Kamiya
Coexpression, purification, crystallization and preliminary X-ray characterization of glycine decarboxylase (P-protein) of the glycine-cleavage system from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 3):554-7.
2003: Tatsuhiko Someya; Nobukazu Nameki; Haruko Hosoi; Sakura Suzuki; Hideki Hatanaka; Michiko Fujii; Takaho Terada; Mikako Shirouzu; Yorinao Inoue; Takehiko Shibata; Seiki Kuramitsu; Shigeyuki Yokoyama; Gota Kawai
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus.
FEBS letters 2003;535(1-3):94-100.
2002: Marina N Vassylyeva; Jookyung Lee; Shun-ichi Sekine; Oleg Laptenko; Seiki Kuramitsu; Takehiko Shibata; Yorinao Inoue; Sergei Borukhov; Dmitry G Vassylyev; Shigeyuki Yokoyama
Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 9):1497-500.
2002: Yoshimitsu Shimomura; Kazuko Sumiguchi-Agari; Ryoji Masui; Seiki Kuramitsu; Keiichi Fukuyama
Overproduction, crystallization and preliminary X-ray diffraction analysis of a quinone oxidoreductase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 8):1365-7.
2002: Osamu Nureki; Mikako Shirouzu; Kyoko Hashimoto; Ryuichiro Ishitani; Takaho Terada; Masatada Tamakoshi; Tairo Oshima; Masao Chijimatsu; Koji Takio; Dmitry G Vassylyev; Takehiko Shibata; Yorinao Inoue; Seiki Kuramitsu; Shigeyuki Yokoyama
An enzyme with a deep trefoil knot for the active-site architecture.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 7):1129-37.
2002: Naoto Ohtani; Noriko Nakagawa; Jun Hoseki; Akio Ebihara; Shinya Satoh; Yoshihiro Agari; Shin-ichiro Kobayashi; Kazuko Agari; Nobuko Maoka; Ryoji Masui; Kunio Miki; Shigeyuki Yokoyama; Seiki Kuramitsu
[An exhaustive overproduction of bacterial proteins].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2002;47(8 Suppl):1009-13.
2001: Atsushi Yamagata; Ryoji Masui; Yoshimitsu Kakuta; Seiki Kuramitsu; Keiichi Fukuyama
Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain.
Nucleic acids research 2001;29(22):4617-24.
2001: Y Hashimoto; Takato Yano; Seiki Kuramitsu; Hiroyuki Kagamiyama
Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker.
FEBS letters 2001;506(3):231-4.
2001: H Ura; T Nakai; S i Kawaguchi; Ikuko Miyahara; Ken Hirotsu; Seiki Kuramitsu
Substrate recognition mechanism of thermophilic dual-substrate enzyme.
Journal of biochemistry 2001;130(1):89-98.
2001: A Shimotohno; S Oue; Takato Yano; Seiki Kuramitsu; Hiroyuki Kagamiyama
Demonstration of the importance and usefulness of manipulating non-active-site residues in protein design.
Journal of biochemistry 2001;129(6):943-8.
2001: R Kato; M Kataoka; Hironari Kamikubo; Seiki Kuramitsu
Direct observation of three conformations of MutS protein regulated by adenine nucleotides.
Journal of molecular biology 2001;309(1):227-38.
2001: Yuriko Yamagata; Kyoko Ogasahara; Yusaku Hioki; Soo Jae Lee; Atsushi Nakagawa; Hideji Nakamura; Masami Ishida; Seiki Kuramitsu; Katsuhide Yutani
Entropic stabilization of the tryptophan synthase alpha-subunit from a hyperthermophile, Pyrococcus furiosus. X-ray analysis and calorimetry.
The Journal of biological chemistry 2001;276(14):11062-71.
2001: S Kawaguchi; J Müller; D Linde; Seiki Kuramitsu; T Shibata; Yorinao Inoue; D G Vassylyev; Shigeyuki Yokoyama
The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus.
The EMBO journal 2001;20(3):562-9.
2001: H Ura; Kazuaki Harata; Ikuo Matsui; Seiki Kuramitsu
Temperature dependence of the enzyme-substrate recognition mechanism.
Journal of biochemistry 2001;129(1):173-8.
2000: H Tachiki; R Kato; Seiki Kuramitsu
DNA binding and protein-protein interaction sites in MutS, a mismatched DNA recognition protein from Thermus thermophilus HB8.
The Journal of biological chemistry 2000;275(52):40703-9.
2000: Takayuki Ohnishi; Hiroshi Iwasaki; Y Ishino; Seiki Kuramitsu; A Nakata; Hideo Shinagawa
Identification and characterization of Thermus thermophilus HB8 RuvA protein, the subunit of the RuvAB protein complex that promotes branch migration of Holliday junctions.
Genes & genetic systems 2000;75(5):233-43.
2000: R Kato; M Kataoka; T Mikawa; Ryoji Masui; Noriko Nakagawa; Hironari Kamikubo; Seiki Kuramitsu
Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation.
FEBS letters 2000;482(1-2):159-62.
2000: M Sugahara; T Mikawa; Takashi Kumasaka; Masaki Yamamoto; R Kato; Keiichi Fukuyama; Yorinao Inoue; Seiki Kuramitsu
Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8.
The EMBO journal 2000;19(15):3857-69.
2000: J Ishijima; T Nakai; S i Kawaguchi; Ken Hirotsu; Seiki Kuramitsu
Free energy requirement for domain movement of an enzyme.
The Journal of biological chemistry 2000;275(25):18939-45.
2000: Atsushi Yamagata; Ryoji Masui; R Kato; Noriko Nakagawa; Hiroshi Ozaki; H Sawai; Seiki Kuramitsu; Keiichi Fukuyama
Interaction of UvrA and UvrB proteins with a fluorescent single-stranded DNA. Implication for slow conformational change upon interaction of UvrB with DNA.
The Journal of biological chemistry 2000;275(18):13235-42.
2000: Vladimir Isaev-Ivanov; M G Kozlov; Dmitry M Baitin; R Masui; Seiki Kuramitsu; Vladislav A Lanzov
Fluorescence and excitation Escherichia coli RecA protein spectra analyzed separately for tyrosine and tryptophan residues.
Archives of biochemistry and biophysics 2000;376(1):124-40.
2000: Ikuo Matsui; Eriko Matsui; Y Sakai; H Kikuchi; Yutaka Kawarabayasi; H Ura; S i Kawaguchi; Seiki Kuramitsu; Kazuaki Harata
The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii.
The Journal of biological chemistry 2000;275(7):4871-9.
2000: Maria Spies; Yury V Kil; Ryoji Masui; R Kato; C Kujo; T Ohshima; Seiki Kuramitsu; Vladislav A Lanzov
The RadA protein from a hyperthermophilic archaeon Pyrobaculum islandicum is a DNA-dependent ATPase that exhibits two disparate catalytic modes, with a transition temperature at 75 degrees C.
European journal of biochemistry / FEBS 2000;267(4):1125-37.
2000: M Sugahara; T Mikawa; R Kato; Keiichi Fukuyama; Takashi Kumasaka; Masaki Yamamoto; Yorinao Inoue; Seiki Kuramitsu
Crystallization and preliminary X-ray crystallographic studies of Thermus thermophilus HB8 MutM protein involved in repairs of oxidative DNA damage.
Journal of biochemistry 2000;127(1):9-11.
2000: Yury V Kil; Dmitry M Baitin; R Masui; E A Bonch-Osmolovskaya; Seiki Kuramitsu; Vladislav A Lanzov
Efficient strand transfer by the RadA recombinase from the hyperthermophilic archaeon Desulfurococcus amylolyticus.
Journal of bacteriology 2000;182(1):130-4.
1999: Noriko Nakagawa; M Sugahara; Ryoji Masui; R Kato; Keiichi Fukuyama; Seiki Kuramitsu
Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
Journal of biochemistry 1999;126(6):986-90.
1999: Jun Hoseki; Takato Yano; Y Koyama; Seiki Kuramitsu; Hiroyuki Kagamiyama
Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus.
Journal of biochemistry 1999;126(5):951-6.
1999: Kazufumi Takano; Yuriko Yamagata; Jun Funahashi; Yusaku Hioki; Seiki Kuramitsu; Katsuhide Yutani
Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry 1999;38(39):12698-708.
1999: A Shibata; Noriko Nakagawa; M Sugahara; Ryoji Masui; R Kato; Seiki Kuramitsu; Keiichi Fukuyama
Crystallization and preliminary X-ray diffraction studies of a DNA excision repair enzyme, UvrB, from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 3):704-5.
1999: R Kato; Seiki Kuramitsu
Characterization of thermostable RecA protein and analysis of its interaction with single-stranded DNA.
European journal of biochemistry / FEBS 1999;259(3):592-601.
1999: Ryoji Masui; Seiki Kuramitsu
[What we can learn from the whole genome sequences of thermophiles].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1999;44(2):165-70.
1999: Tadashi Wada; Toshio Yamazaki; Seiki Kuramitsu; Yoshimasa Kyogoku
Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein.
Journal of biochemistry 1999;125(1):143-50.
1998: Y Nobe; S i Kawaguchi; H Ura; T Nakai; Ken Hirotsu; R Kato; Seiki Kuramitsu
The novel substrate recognition mechanism utilized by aspartate aminotransferase of the extreme thermophile Thermus thermophilus HB8.
The Journal of biological chemistry 1998;273(45):29554-64.
1998: Ryoji Masui; T Mikawa; R Kato; Seiki Kuramitsu
Characterization of the oligomeric states of RecA protein: monomeric RecA protein can form a nucleoprotein filament.
Biochemistry 1998;37(42):14788-97.
1998: H Tachiki; R Kato; Ryoji Masui; Kazuhiro Hasegawa; H Itakura; Keiichi Fukuyama; Seiki Kuramitsu
Domain organization and functional analysis of Thermus thermophilus MutS protein.
Nucleic acids research 1998;26(18):4153-9.
1998: Ryoji Masui; Seiki Kuramitsu
Probing of DNA-binding sites of Escherichia coli RecA protein utilizing 1-anilinonaphthalene-8-sulfonic acid.
Biochemistry 1998;37(35):12133-43.
1998: S i Kawaguchi; Seiki Kuramitsu
Thermodynamics and molecular simulation analysis of hydrophobic substrate recognition by aminotransferases.
The Journal of biological chemistry 1998;273(29):18353-64.
1998: T Mikawa; Ryoji Masui; Seiki Kuramitsu
RecA protein has extremely high cooperativity for substrate in its ATPase activity.
Journal of biochemistry 1998;123(3):450-7.
1998: T Mikawa; R Kato; M Sugahara; Seiki Kuramitsu
Thermostable repair enzyme for oxidative DNA damage from extremely thermophilic bacterium, Thermus thermophilus HB8.
Nucleic acids research 1998;26(4):903-10.
1997: Michael Petukhov; Yury V Kil; Seiki Kuramitsu; Vladislav A Lanzov
Insights into thermal resistance of proteins from the intrinsic stability of their alpha-helices.
Proteins 1997;29(3):309-20.
1997: Ryoji Masui; T Mikawa; Seiki Kuramitsu
Local folding of the N-terminal domain of Escherichia coli RecA controls protein-protein interaction.
The Journal of biological chemistry 1997;272(44):27707-15.
1997: Y Hiramatsu; R Kato; S i Kawaguchi; Seiki Kuramitsu
Cloning and characterization of the uvrD gene from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Gene 1997;199(1-2):77-82.
1997: R Kato; Kazuhiro Hasegawa; Y Hidaka; Seiki Kuramitsu; T Hoshino
Characterization of a thermostable DNA photolyase from an extremely thermophilic bacterium, Thermus thermophilus HB27.
Journal of bacteriology 1997;179(20):6499-503.
1997: Noriko Nakagawa; Ryoji Masui; R Kato; Seiki Kuramitsu
Domain structure of Thermus thermophilus UvrB protein. Similarity in domain structure to a helicase.
The Journal of biological chemistry 1997;272(36):22703-13.
1997: S i Kawaguchi; Y Nobe; J Yasuoka; T Wakamiya; Shoichi Kusumoto; Seiki Kuramitsu
Enzyme flexibility: a new concept in recognition of hydrophobic substrates.
Journal of biochemistry 1997;122(1):55-63.
1997: A A Alexseyev; Dmitry M Baitin; Seiki Kuramitsu; T Ogawa; H Ogawa; Vladislav A Lanzov
A recombinational defect in the C-terminal domain of Escherichia coli RecA2278-5 protein is compensated by protein binding to ATP.
Molecular microbiology 1997;23(2):255-65.
1996: N Yamamoto; R Kato; Seiki Kuramitsu
Cloning, sequencing and expression of the uvrA gene from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Gene 1996;171(1):103-6.
1996: R Kato; N Yamamoto; K Kito; Seiki Kuramitsu
ATPase activity of UvrB protein form Thermus thermophilus HB8 and its interaction with DNA.
The Journal of biological chemistry 1996;271(16):9612-8.
1996: S Takamatsu; R Kato; Seiki Kuramitsu
Mismatch DNA recognition protein from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Nucleic acids research 1996;24(4):640-7.
1996: A Okamoto; R Kato; Ryoji Masui; A Yamagishi; T Oshima; Seiki Kuramitsu
An aspartate aminotransferase from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Journal of biochemistry 1996;119(1):135-44.
1995: T Mikawa; Ryoji Masui; Tomoko Ogawa; Hironori Ogawa; Seiki Kuramitsu
N-terminal 33 amino acid residues of Escherichia coli RecA protein contribute to its self-assembly.
Journal of molecular biology 1995;250(4):471-83.
1995: S i Kawaguchi; Seiki Kuramitsu
Separation of heat-stable proteins from Thermus thermophilus HB8 by two-dimensional electrophoresis.
Electrophoresis 1995;16(6):1060-6.
1994: D E Metzler; C M Metzler; R D Scott; E T Mollova; Hiroyuki Kagamiyama; T Yano; Seiki Kuramitsu; H Hayashi; Ken Hirotsu; Ikuko Miyahara
NMR studies of 1H resonances in the 10-18-ppm range for aspartate aminotransferase from Escherichia coli.
The Journal of biological chemistry 1994;269(45):28027-33.
1994: R Watanabe; Ryoji Masui; T Mikawa; S Takamatsu; R Kato; Seiki Kuramitsu
Interaction of Escherichia coli RecA protein with ATP and its analogues.
Journal of biochemistry 1994;116(5):960-6.
1994: A Okamoto; T Higuchi; Ken Hirotsu; Seiki Kuramitsu; Hiroyuki Kagamiyama
X-ray crystallographic study of pyridoxal 5'-phosphate-type aspartate aminotransferases from Escherichia coli in open and closed form.
Journal of biochemistry 1994;116(1):95-107.
1994: S i Kawaguchi; Seiki Kuramitsu
[Mechanism of enzyme reaction].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1994;39(7):1083-90.
1994: K Miyazawa; S i Kawaguchi; A Okamoto; R Kato; Tomohiko Ogawa; Seiki Kuramitsu
Construction of aminotransferase chimeras and analysis of their substrate specificity.
Journal of biochemistry 1994;115(3):568-77.
1994: Y Matsushima; D W Kim; Tohru Yoshimura; Seiki Kuramitsu; Hiroyuki Kagamiyama; Nobuyoshi Esaki; K Soda
Replacement of active-site lysine-239 of thermostable aspartate aminotransferase by S-(2-aminoethyl)cysteine: properties of the mutant enzyme.
Journal of biochemistry 1994;115(1):108-12.
1993: R Kato; Seiki Kuramitsu
RecA protein from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Journal of biochemistry 1993;114(6):926-9.
1992: T Tanaka; S Yamamoto; M Taniguchi; H Hayashi; Seiki Kuramitsu; H Kagamiyama; S Oi
Further studies on aspartate aminotransferase of thermophilic methanogens by analysis of general properties, bound cofactors, and subunit structures.
Journal of biochemistry 1992;112(6):811-5.
1992: Seiki Kuramitsu
[Protein engineering. II: Catalytic mechanism of aminotransferases].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1992;37(13):2243-56.
1992: T Yano; Seiki Kuramitsu; S Tanase; Y Morino; Hiroyuki Kagamiyama
Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase: the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5'-phosphate.
Biochemistry 1992;31(25):5878-87.
1991: K Inoue; Seiki Kuramitsu; A Okamoto; Ken Hirotsu; T Higuchi; Hiroyuki Kagamiyama
Site-directed mutagenesis of Escherichia coli aspartate aminotransferase: role of Tyr70 in the catalytic processes.
Biochemistry 1991;30(31):7796-801.
1991: H Hayashi; Seiki Kuramitsu; Hiroyuki Kagamiyama
Replacement of an interdomain residue Val39 of Escherichia coli aspartate aminotransferase affects the catalytic competence without altering the substrate specificity of the enzyme.
Journal of biochemistry 1991;109(5):699-704.
1991: T Yano; Seiki Kuramitsu; S Tanase; Y Morino; K Hiromi; Hiroyuki Kagamiyama
The role of His143 in the catalytic mechanism of Escherichia coli aspartate aminotransferase.
The Journal of biological chemistry 1991;266(10):6079-85.
1991: K Inoue; Seiki Kuramitsu; A Okamoto; Ken Hirotsu; T Higuchi; Y Morino; Hiroyuki Kagamiyama
Tyr225 in aspartate aminotransferase: contribution of the hydrogen bond between Tyr225 and coenzyme to the catalytic reaction.
Journal of biochemistry 1991;109(4):570-6.
1991: M H Sung; K Tanizawa; H Tanaka; Seiki Kuramitsu; Hiroyuki Kagamiyama; Ken Hirotsu; A Okamoto; T Higuchi; K Soda
Thermostable aspartate aminotransferase from a thermophilic Bacillus species. Gene cloning, sequence determination, and preliminary x-ray characterization.
The Journal of biological chemistry 1991;266(4):2567-72.
1990: S Kamitori; A Okamoto; Ken Hirotsu; T Higuchi; Seiki Kuramitsu; Hiroyuki Kagamiyama; Y Matsuura; Y Katsube
Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution.
Journal of biochemistry 1990;108(2):175-84.
1990: Seiki Kuramitsu; K Hiromi; H Hayashi; Y Morino; Hiroyuki Kagamiyama
Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity.
Biochemistry 1990;29(23):5469-76.
1990: M H Sung; K Tanizawa; H Tanaka; Seiki Kuramitsu; H Kagamiyama; K Soda
Purification and characterization of thermostable aspartate aminotransferase from a thermophilic Bacillus species.
Journal of bacteriology 1990;172(3):1345-51.
1989: Y Inoue; Seiki Kuramitsu; K Inoue; Hiroyuki Kagamiyama; K Hiromi; S Tanase; Y Morino
Substitution of a lysyl residue for arginine 386 of Escherichia coli aspartate aminotransferase.
The Journal of biological chemistry 1989;264(16):9673-81.
1989: S Kamitori; Y Odagaki; K Inoue; Seiki Kuramitsu; Hiroyuki Kagamiyama; Y Matsuura; T Higuchi
Crystallization and preliminary X-ray characterization of branched-chain amino acid aminotransferase from Escherichia coli.
Journal of biochemistry 1989;105(5):671-2.
1989: K Tanizawa; S Asano; Y Masu; Seiki Kuramitsu; Hiroyuki Kagamiyama; H Tanaka; K Soda
The primary structure of thermostable D-amino acid aminotransferase from a thermophilic Bacillus species and its correlation with L-amino acid aminotransferases.
The Journal of biological chemistry 1989;264(5):2450-4.
1988: K Inoue; Seiki Kuramitsu; K Aki; Y Watanabe; T Takagi; M Nishigai; A Ikai; Hiroyuki Kagamiyama
Branched-chain amino acid aminotransferase of Escherichia coli: overproduction and properties.
Journal of biochemistry 1988;104(5):777-84.
1988: S Kamitori; Ken Hirotsu; T Higuchi; K Kondo; K Inoue; Seiki Kuramitsu; Hiroyuki Kagamiyama; Y Higuchi; N Yasuoka; M Kusunoki
Three-dimensional structure of aspartate aminotransferase from Escherichia coli at 2.8 A resolution.
Journal of biochemistry 1988;104(3):317-8.
1988: T Ono; Hiromasa Tojo; Seiki Kuramitsu; H Kagamiyama; M Okamoto
Purification and characterization of a membrane-associated phospholipase A2 from rat spleen. Its comparison with a cytosolic phospholipase A2 S-1.
The Journal of biological chemistry 1988;263(12):5732-8.
1988: Hiromasa Tojo; T Ono; Seiki Kuramitsu; H Kagamiyama; M Okamoto
A phospholipase A2 in the supernatant fraction of rat spleen. Its similarity to rat pancreatic phospholipase A2.
The Journal of biological chemistry 1988;263(12):5724-31.
1987: S Kamitori; Ken Hirotsu; T Higuchi; K Kondo; K Inoue; Seiki Kuramitsu; Hiroyuki Kagamiyama; Y Higuchi; N Yasuoka; M Kusunoki
Overproduction and preliminary X-ray characterization of aspartate aminotransferase from Escherichia coli.
Journal of biochemistry 1987;101(3):813-6.