Username

Password

Preview

Sign-in free and Explore the Exciting World of BiomedExperts:

Over 1.500.000 Profiles
More than 1.800 Organizations worldwide
State of the Art Network Visualizations

Manage your own Profile
Locate Experts in your Country/Region
Locate Experts in your 1. and 2. Level Network
Connect to Experts Worldwide

NetworkView

Seiki Kuramitsu

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Living Beings

Procedures

Genes & Molecular Sequences

Amino Acid Sequence

Concepts & Ideas

Chemicals & Drugs

Phenomena

Protein Binding

Sign-in to see full Profile

Sign-in to see all Coauthors

Publications

TOP 3
Arai Ryoichi; Murayama Kazutaka; Uchikubo-Kamo Tomomi; Nishimoto Madoka; Toyama Mitsutoshi; Kuramitsu Seiki; Terada Takaho; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
Jeyakanthan Jeyaraman; Thamotharan Subbiah; Velmurugan Devadasan; Rao Vaijayanthimala Surya Narayna; Nagarajan Shanthi; Shinkai Akeo; Kuramitsu Seiki; Yokoyama Shigeyuki
New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK).
Hosaka Toshiaki; Murayama Kazutaka; Kato-Murayama Miyuki; Urushibata Akiko; Akasaka Ryogo; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.

Sign-in to see all Publications

Sign in free and see...

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the visualized research activity
of experts around the globe

Sign-in to see more

Geonetwork of Seiki Kuramitsu (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

Sign-in to see more

All Publications

2009: Arai Ryoichi; Murayama Kazutaka; Uchikubo-Kamo Tomomi; Nishimoto Madoka; Toyama Mitsutoshi; Kuramitsu Seiki; Terada Takaho; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
Journal of structural biology 2009;168(3):575-81.
2009: Jeyakanthan Jeyaraman; Thamotharan Subbiah; Velmurugan Devadasan; Rao Vaijayanthimala Surya Narayna; Nagarajan Shanthi; Shinkai Akeo; Kuramitsu Seiki; Yokoyama Shigeyuki
New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK).
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 10):978-86.
2009: Hosaka Toshiaki; Murayama Kazutaka; Kato-Murayama Miyuki; Urushibata Akiko; Akasaka Ryogo; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 8):767-76.
2009: Tomoike Fumiaki; Wakamatsu Taisuke; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.
Proteins 2009;76(1):244-8.
2009: Mega Ryosuke; Kondo Naoyuki; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Two dNTP triphosphohydrolases from Pseudomonas aeruginosa possess diverse substrate specificities.
The FEBS journal 2009;276(12):3211-21.
2009: Ooga Takushi; Ohashi Yoshiaki; Kuramitsu Seiki; Koyama Yoshinori; Tomita Masaru; Soga Tomoyoshi; Masui Ryoji
Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus.
The Journal of biological chemistry 2009;284(23):15549-56.
2009: Sakamoto Keiko; Agari Yoshihiro; Agari Kazuko; Yokoyama Shigeyuki; Kuramitsu Seiki; Shinkai Akeo
X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8.
Proteins 2009;75(2):528-32.
2009: Nakane Shuhei; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity.
Nucleic acids research 2009;37(6):2037-52.
2009: Sakamoto Kensaku; Murayama Kazutaka; Oki Kenji; Iraha Fumie; Kato-Murayama Miyuki; Takahashi Masahiro; Ohtake Kazumasa; Kobayashi Takatsugu; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Genetic encoding of 3-iodo-L-tyrosine in Escherichia coli for single-wavelength anomalous dispersion phasing in protein crystallography.
Structure (London, England : 1993) 2009;17(3):335-44.
2009: Kondo Naoyuki; Ebihara Akio; Ru Heng; Kuramitsu Seiki; Iwamoto Aikichi; Rao Zihe; Matsuda Zene
Thermus thermophilus-derived protein tags that aid in preparation of insoluble viral proteins.
Analytical biochemistry 2009;385(2):278-85.
2008: Agari Yoshihiro; Yokoyama Shigeyuki; Kuramitsu Seiki; Shinkai Akeo
X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8.
Proteins 2008;73(4):1063-7.
2008: Fukui Kenji; Nakagawa Noriko; Kitamura Yoshiaki; Nishida Yuya; Masui Ryoji; Kuramitsu Seiki
Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression.
The Journal of biological chemistry 2008;283(48):33417-27.
2008: Sakamoto Keiko; Agari Yoshihiro; Yokoyama Shigeyuki; Kuramitsu Seiki; Shinkai Akeo
Functional identification of an anti-sigmaE factor from Thermus thermophilus HB8.
Gene 2008;423(2):153-9.
2008: Jeyakanthan Jeyaraman; Rangarajan Sarani; Mridula P; Kanaujia Shankar Prasad; Shiro Yoshitsugu; Kuramitsu Seiki; Yokoyama Shigeyuki; Sekar Kanagaraj
Observation of a calcium-binding site in the gamma-class carbonic anhydrase from Pyrococcus horikoshii.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 10):1012-9.
2008: Agari Yoshihiro; Kashihara Aiko; Yokoyama Shigeyuki; Kuramitsu Seiki; Shinkai Akeo
Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.
Molecular microbiology 2008;70(1):60-75.
2008: Ragunathan Preethi; Kumarevel Thirumananseri; Agari Yoshihiro; Shinkai Akeo; Kuramitsu Seiki; Yokoyama Shigeyuki; Ponnuraj Karthe
Crystal structure of ST2348, a CBS domain protein, from hyperthermophilic archaeon Sulfolobus tokodaii.
Biochemical and biophysical research communications 2008;375(1):124-8.
2008: Morita Rihito; Ishikawa Hirohito; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8.
Proteins 2008;73(1):259-64.
2008: Morita Rihito; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein.
Journal of biochemistry 2008;144(2):267-77.
2008: Itoh Yuzuru; Sekine Shun-ichi; Kuroishi Chizu; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
RNA biology 2008;5(3):169-77.
2008: Yoshida Hiromi; Yamada Mitsugu; Kuramitsu Seiki; Kamitori Shigehiro
Structure of a putative molybdenum-cofactor biosynthesis protein C (MoaC) from Sulfolobus tokodaii (ST0472).
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 7):589-92.
2008: Iino Hitoshi; Naitow Hisashi; Nakamura Yuki; Nakagawa Noriko; Agari Yoshihiro; Kanagawa Mayumi; Ebihara Akio; Shinkai Akeo; Sugahara Mitsuaki; Miyano Masashi; Kamiya Nobuo; Yokoyama Shigeyuki; Hirotsu Ken; Kuramitsu Seiki
Crystallization screening test for the whole-cell project on Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 6):487-91.
2008: Ebihara Akio; Manzoku Miho; Iino Hitoshi; Kanagawa Mayumi; Shinkai Akeo; Yokoyama Shigeyuki; Kuramitsu Seiki
Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins.
Proteins 2008;71(4):2097-101.
2008: Ihara Makoto; Okajima Toshihide; Yamashita Atsuko; Oda Takuma; Hirata Koichi; Nishiwaki Hisashi; Morimoto Takako; Akamatsu Miki; Ashikawa Yuji; Kuroda Shun'ichi; Mega Ryosuke; Kuramitsu Seiki; Sattelle David B; Matsuda Kazuhiko
Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin.
Invertebrate neuroscience : IN 2008;8(2):71-81.
2008: Nakai Tadashi; Kuramitsu Seiki; Kamiya Nobuo
Structural bases for the specific interactions between the E2 and E3 components of the Thermus thermophilus 2-oxo acid dehydrogenase complexes.
Journal of biochemistry 2008;143(6):747-58.
2008: Fukui Kenji; Nishida Masami; Nakagawa Noriko; Masui Ryoji; Kuramitsu Seiki
Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL.
The Journal of biological chemistry 2008;283(18):12136-45.
2008: Yokoyama Shigeyuki; Kigawa Takanori; Shirouzu Mikako; Miyano Masashi; Kuramitsu Seiki
[RIKEN structural genomics/proteomics initiative]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2008;53(5):632-7.
2008: Kuramitsu Seiki; Masui Ryoji
[Structural proteomics of metabolism-related proteins]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2008;53(5):604-7.
2008: Kim Joong-Jae; Masui Ryoji; Kuramitsu Seiki; Seo Jin-Ho; Kim Kwang; Sung Moon-Hee
Characterization of growth-supporting factors produced by Geobacillus toebii for the commensal thermophile Symbiobacterium toebii.
Journal of microbiology and biotechnology 2008;18(3):490-6.
2008: Kondo Naoyuki; Nishikubo Takashi; Wakamatsu Taisuke; Ishikawa Hirohito; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus.
Extremophiles : life under extreme conditions 2008;12(2):217-23.
2008: Rangarajan Sarani; Jeyakanthan Jeyaraman; Mridula Palappetty; Sakamoto Keiko; Kitamura Yoshiaki; Agari Yoshihiro; Shinkai Akeo; Ebihara Akio; Kuramitsu Seiki; Yokoyama Shigeyuki; Sekar Kanagaraj
Crystallization and preliminary crystallographic studies of L30e, a ribosomal protein from Methanocaldococcus jannaschii (MJ1044).
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 2):102-4.
2008: Wakamatsu Taisuke; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8.
Journal of bacteriology 2008;190(3):1108-17.
2008: Agari Yoshihiro; Sato Shinya; Wakamatsu Taisuke; Bessho Yoshitaka; Ebihara Akio; Yokoyama Shigeyuki; Kuramitsu Seiki; Shinkai Akeo
X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7.
Proteins 2008;70(3):1108-11.
2008: Isobe Hiroshi; Yamanaka Syusuke; Kuramitsu Seiki; Yamaguchi Kizashi
Regulation mechanism of spin-orbit coupling in charge-transfer-induced luminescence of imidazopyrazinone derivatives.
Journal of the American Chemical Society 2008;130(1):132-49.
2007: Xie Yong; Takemoto Chie; Kishishita Seiichiro; Uchikubo-Kamo Tomomi; Murayama Kazutaka; Chen Lirong; Liu Zhi Jie; Wang Bi Cheng; Manzoku Miho; Ebihara Akio; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 12):993-7.
2007: Shinkai Akeo; Ohbayashi Naomi; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Identification of promoters recognized by RNA polymerase-sigmaE holoenzyme from Thermus thermophilus HB8.
Journal of bacteriology 2007;189(23):8758-64.
2007: Nakano Noboru; Kumarevel Thirumananseri; Matsunaga Emiko; Shinkai Akeo; Kuramitsu Seiki; Yokoyama Shigeyuki
Purification, crystallization and preliminary X-ray crystallographic analysis of ST1022, a putative member of the Lrp/AsnC family of transcriptional regulators isolated from Sulfolobus tokodaii strain 7.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 11):964-6.
2007: Kosaka Hiromichi; Hoseki Jun; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.
Journal of molecular biology 2007;373(4):839-50.
2007: Kanaujia Shankar Prasad; Ranjani Chellamuthu Vasuki; Jeyakanthan Jeyaraman; Nishida Masami; Kitamura Yoshiaki; Baba Seiki; Ebihara Akio; Shimizu Nobutaka; Nakagawa Noriko; Shinkai Akeo; Yamamoto Masaki; Kuramitsu Seiki; Shiro Yoshitsugu; Sekar Kanagaraj; Yokoyama Shigeyuki
Preliminary X-ray crystallographic study of glucose dehydrogenase from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 5):446-8.
2007: Bessho Yoshitaka; Shibata Rie; Sekine Shun-ichi; Murayama Kazutaka; Higashijima Kyoko; Hori-Takemoto Chie; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(20):8293-8.
2007: Shinkai Akeo; Kira Satoshi; Nakagawa Noriko; Kashihara Aiko; Kuramitsu Seiki; Yokoyama Shigeyuki
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8.
Journal of bacteriology 2007;189(10):3891-901.
2007: Ito Akihiro; Okamura Taka-Aki; Masui Ken; Kaneko Maki; Masui Ryoji; Ake Kojiro; Kuramitsu Seiki; Yamaguchi Minoru; Kuyama Hiroki; Ando Eiji; Norioka Shigemi; Nakazawa Takashi; Tsunasawa Susumu; Yamamoto Hitoshi; Ueyama Norikazu
High sequence-coverage detection of proteolytic peptides using a bis(terpyridine)ruthenium(II) complex.
The Analyst 2007;132(4):358-64.
2007: Kanaujia Shankar Prasad; Ranjani Chellamuthu Vasuki; Jeyakanthan Jeyaraman; Ohmori Miwa; Agari Kazuko; Kitamura Yoshiaki; Baba Seiki; Ebihara Akio; Shinkai Akeo; Kuramitsu Seiki; Shiro Yoshitsugu; Sekar Kanagaraj; Yokoyama Shigeyuki
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of molybdopterin synthase from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 4):324-6.
2007: Okazaki Nobuo; Kumei Maki; Manzoku Miho; Kuramitsu Seiki; Shirouzu Mikako; Shinkai Akeo; Yokoyama Shigeyuki
Structure of a UPF0150-family protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 3):173-7.
2007: Yoshikawa Seiko; Arai Ryoichi; Kinoshita Yukiko; Uchikubo-Kamo Tomomi; Wakamatsu Taisuke; Akasaka Ryogo; Masui Ryoji; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 3):357-65.
2007: Kanaujia Shankar Prasad; Ranjani Chellamuthu Vasuki; Jeyakanthan Jeyaraman; Baba Seiki; Kuroishi Chizu; Ebihara Akio; Shinkai Akeo; Kuramitsu Seiki; Shiro Yoshitsugu; Sekar Kanagaraj; Yokoyama Shigeyuki
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of DHNA synthetase from Geobacillus kaustophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 2):103-5.
2007: Kondo Naoyuki; Nakagawa Noriko; Ebihara Akio; Chen Lirong; Liu Zhi-Jie; Wang Bi-Cheng; Yokoyama Shigeyuki; Kuramitsu Seiki; Masui Ryoji
Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 2):230-9.
2007: Kanaujia Shankar Prasad; Ranjani Chellamuthu Vasuki; Jeyakanthan Jeyaraman; Baba Seiki; Chen Lirong; Liu Zhi-Jie; Wang Bi-Cheng; Nishida Masami; Ebihara Akio; Shinkai Akeo; Kuramitsu Seiki; Shiro Yoshitsugu; Sekar Kanagaraj; Yokoyama Shigeyuki
Crystallization and preliminary crystallographic analysis of molybdenum-cofactor biosynthesis protein C from Thermus thermophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 1):27-9.
2007: Fukui Kenji; Takahata Yoshio; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry.
Nucleic acids research 2007;35(15):e100.
2007: Ito Akihiro; Okamura Taka-aki; Yamamoto Hitoshi; Ueyama Norikazu; Yamaguchi Minoru; Kuyama Hiroki; Ando Eiji; Tsunasawa Susumu; Ake Kojiro; Masui Ryoji; Kuramitsu Seiki; Nakazawa Takashi; Norioka Shigemi
Simultaneous detection of N-terminal fragment ions in a protein mixture using a ruthenium(II) complex.
Rapid communications in mass spectrometry : RCM 2007;21(16):2647-53.
2007: Fukui Kenji; Kosaka Hiromichi; Kuramitsu Seiki; Masui Ryoji
Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain.
Nucleic acids research 2007;35(3):850-60.
2006: Hiyama Takuya B; Zhao Min; Kitago Yu; Yao Min; Sekine Shun-Ichi; Terada Takaho; Kuroishi Chizu; Liu Zhi-Jie; Rose John P; Kuramitsu Seiki; Shirouzu Mikako; Watanabe Nobuhisa; Yokoyama Shigeyuki; Tanaka Isao; Wang Bi-Cheng
Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
Journal of structural and functional genomics 2006;7(3-4):119-29.
2006: Sasaki Hiroshi M; Sekine Shun-ichi; Sengoku Toru; Fukunaga Ryuya; Hattori Motoyuki; Utsunomiya Yukiko; Kuroishi Chizu; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(40):14744-9.
2006: Ishikawa Hirohito; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily.
Journal of biochemistry 2006;140(4):535-42.
2006: Nakano Noboru; Okazaki Nobuo; Satoh Shinya; Takio Koji; Kuramitsu Seiki; Shinkai Akeo; Yokoyama Shigeyuki
Structure of the stand-alone RAM-domain protein from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 9):855-60.
2006: Dong Xuesong; Bessho Yoshitaka; Shibata Rie; Nishimoto Madoka; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.
RNA biology 2006;3(3):115-22.
2006: Iwasaki Wataru; Sekine Shun-ichi; Kuroishi Chizu; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase.
Journal of molecular biology 2006;360(2):329-42.
2006: Hattori Motoyuki; Mizohata Eiichi; Tatsuguchi Ayako; Shibata Rie; Kishishita Seiichiro; Murayama Kazutaka; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.
Proteins 2006;64(1):284-7.
2006: Ito Kaori; Arai Ryoichi; Fusatomi Emiko; Kamo-Uchikubo Tomomi; Kawaguchi Shin-Ichi; Akasaka Ryogo; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD.
Protein science : a publication of the Protein Society 2006;15(5):1187-92.
2006: Inagaki Eiji; Sakamoto Keiko; Obayashi Naomi; Terada Takaho; Shirouzu Mikako; Bessho Yoshitaka; Kuroishi Chizu; Kuramitsu Seiki; Shinkai Akeo; Yokoyama Shigeyuki
Expression, purification, crystallization and preliminary X-ray diffraction analysis of galactokinase from Pyrococcus horikoshii.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 2):169-71.
2006: Kuratani Mitsuo; Sakai Hiroaki; Takahashi Masahiro; Yanagisawa Tatsuo; Kobayashi Takatsugu; Murayama Kazutaka; Chen Lirong; Liu Zhi-Jie; Wang Bi-Cheng; Kuroishi Chizu; Kuramitsu Seiki; Terada Takaho; Bessho Yoshitaka; Shirouzu Mikako; Sekine Shun-ichi; Yokoyama Shigeyuki
Crystal structures of tyrosyl-tRNA synthetases from Archaea.
Journal of molecular biology 2006;355(3):395-408.
2005: Nameki Nobukazu; Someya Tatsuhiko; Okano Satoshi; Suemasa Reiko; Kimoto Michiko; Hanawa-Suetsugu Kyoko; Terada Takaho; Shirouzu Mikako; Hirao Ichiro; Takaku Hiroshi; Himeno Hyouta; Muto Akira; Kuramitsu Seiki; Yokoyama Shigeyuki; Kawai Gota
Interaction analysis between tmRNA and SmpB from Thermus thermophilus.
Journal of biochemistry 2005;138(6):729-39.
2005: Hattori Motoyuki; Mizohata Eiichi; Manzoku Miho; Bessho Yoshitaka; Murayama Kazutaka; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8.
Proteins 2005;61(4):1117-20.
2005: Nishikubo Takashi; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon.
Journal of biotechnology 2005;120(4):341-6.
2005: Pioszak Augen A; Murayama Kazutaka; Nakagawa Noriko; Ebihara Akio; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 10):867-74.
2005: Ito Akihiro; Okamura Taka-Aki; Yamamoto Hitoshi; Ueyama Norikazu; Ake Kojiro; Masui Ryoji; Kuramitsu Seiki; Tsunasawa Susumu
Distinction of Leu and Ile Using a Ruthenium(II) complex by MALDI-LIFT-TOF/TOF-MS analysis.
Analytical chemistry 2005;77(20):6618-24.
2005: Ueda Takumi; Kato Akira; Kuramitsu Seiki; Terasawa Hiroaki; Shimada Ichio
Identification and characterization of a second chromophore of DNA photolyase from Thermus thermophilus HB27.
The Journal of biological chemistry 2005;280(43):36237-43.
2005: Tanaka Yoko; Nakagawa Noriko; Kuramitsu Seiki; Yokoyama Shigeyuki; Masui Ryoji
Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative.
Journal of biochemistry 2005;138(3):263-75.
2005: Lokanath Neratur K; Ohshima Noriyasu; Takio Koji; Shiromizu Ikuya; Kuroishi Chizu; Okazaki Nobuo; Kuramitsu Seiki; Yokoyama Shigeyuki; Miyano Masashi; Kunishima Naoki
Crystal structure of novel NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8.
Journal of molecular biology 2005;352(4):905-17.
2005: Kunishima Naoki; Asada Yukuhiko; Sugahara Mayumi; Ishijima Jun; Nodake Yuichi; Sugahara Mitsuaki; Miyano Masashi; Kuramitsu Seiki; Yokoyama Shigeyuki; Sugahara Michihiro
A novel induced-fit reaction mechanism of asymmetric hot dog thioesterase PAAI.
Journal of molecular biology 2005;352(1):212-28.
2005: Yoshinari Shigeo; Fujita Shinji; Masui Ryoji; Kuramitsu Seiki; Yokobori Shin-ichi; Kita Kiyoshi; Watanabe Yoh-ichi
Functional reconstitution of a crenarchaeal splicing endonuclease in vitro.
Biochemical and biophysical research communications 2005;334(4):1254-9.
2005: Ooga Takushi; Yoshiba Sachico; Nakagawa Noriko; Kuramitsu Seiki; Masui Ryoji
Molecular mechanism of the Thermus thermophilus ADP-ribose pyrophosphatase from mutational and kinetic studies.
Biochemistry 2005;44(26):9320-9.
2005: Isobe Hiroshi; Takano Yu; Okumura Mitsutaka; Kuramitsu Seiki; Yamaguchi Kizashi
Mechanistic insights in charge-transfer-induced luminescence of 1,2-dioxetanones with a substituent of low oxidation potential.
Journal of the American Chemical Society 2005;127(24):8667-79.
2005: Arai Ryoichi; Nishimoto Madoka; Toyama Mitsutoshi; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Conserved protein TTHA1554 from Thermus thermophilus HB8 binds to glutamine synthetase and cystathionine beta-lyase.
Biochimica et biophysica acta 2005;1750(1):40-7.
2005: Nakai Tadashi; Nakagawa Noriko; Maoka Nobuko; Masui Ryoji; Kuramitsu Seiki; Kamiya Nobuo
Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.
The EMBO journal 2005;24(8):1523-36.
2005: Handa Noriko; Terada Takaho; Doi-Katayama Yukiko; Hirota Hiroshi; Tame Jeremy R H; Park Sam-Yong; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2005;14(4):1004-10.
2005: Kimura Shuhei; Ide Kaori; Kashihara Aiko; Kano Makoto; Hatakeyama Mariko; Masui Ryoji; Nakagawa Noriko; Yokoyama Shigeyuki; Kuramitsu Seiki; Konagaya Akihiko
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.
Bioinformatics (Oxford, England) 2005;21(7):1154-63.
2005: Kato Masahiro; Yamamoto Hitoshi; Okamura Taka-aki; Maoka Nobuko; Masui Ryoji; Kuramitsu Seiki; Ueyama Norikazu
Inhibition of Thermus thermophilus HB8 thioredoxin activity by platinum(II).
Dalton transactions (Cambridge, England : 2003) 2005;(6):1023-6.
2005: Kukimoto-Niino Mutsuko; Shibata Rie; Murayama Kazutaka; Hamana Hiroaki; Nishimoto Madoka; Bessho Yoshitaka; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution.
Protein science : a publication of the Protein Society 2005;14(3):823-7.
2005: Murayama Kazutaka; Shirouzu Mikako; Terada Takaho; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of TT1662 from Thermus thermophilus HB8: a member of the alpha/beta hydrolase fold enzymes.
Proteins 2005;58(4):982-4.
2005: Sakai Hiroaki; Wang Hongfei; Takemoto-Hori Chie; Kaminishi Tatsuya; Yamaguchi Hiroto; Kamewari Yuki; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8.
Journal of structural biology 2005;149(1):99-110.
2005: Seto Azusa; Murayama Kazutaka; Toyama Mitsutoshi; Ebihara Akio; Nakagawa Noriko; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8.
Proteins 2005;58(1):235-42.
2005: Yoshinari Shigeo; Fujita Shinji; Masui Ryoji; Kuramitsu Seiki; Yokobori Shin-ichi; Kita Kiyoshi; Watanabe Yoh-ichi
Functional reconstitution of an archaeal splicing endonuclease in vitro.
Nucleic acids symposium series (2004) 2005;(49):103-4.
2004: Nishimura Mitsuhiro; Yoshida Takuya; Shirouzu Mikako; Terada Takaho; Kuramitsu Seiki; Yokoyama Shigeyuki; Ohkubo Tadayasu; Kobayashi Yuji
Solution structure of ribosomal protein L16 from Thermus thermophilus HB8.
Journal of molecular biology 2004;344(5):1369-83.
2004: Kishishita Seiichiro; Tatsuguchi Ayako; Ushikoshi-Nakayama Ryoko; Terada Takaho; Kuramitsu Seiki; Park Sam-Yong; Tame Jeremy R H; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8.
Proteins 2004;57(4):883-7.
2004: Ueda Takumi; Kato Akira; Ogawa Yuuta; Torizawa Takuya; Kuramitsu Seiki; Iwai Shigenori; Terasawa Hiroaki; Shimada Ichio
NMR study of repair mechanism of DNA photolyase by FAD-induced paramagnetic relaxation enhancement.
The Journal of biological chemistry 2004;279(50):52574-9.
2004: Kukimoto-Niino Mutsuko; Murayama Kazutaka; Kato-Murayama Miyuki; Idaka Miki; Bessho Yoshitaka; Tatsuguchi Ayako; Ushikoshi-Nakayama Ryoko; Terada Takaho; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2004;13(11):3038-42.
2004: Lokanath Neratur K; Shiromizu Ikuya; Ohshima Noriyasu; Nodake Yuichi; Sugahara Mitsuaki; Yokoyama Shigeyuki; Kuramitsu Seiki; Miyano Masashi; Kunishima Naoki
Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 10):1816-23.
2004: Wang Hongfei; Takemoto Chie Hori; Murayama Kazutaka; Sakai Hiroaki; Tatsuguchi Ayako; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2004;13(10):2806-10.
2004: Kaneko Maki; Masui Ryoji; Ake Kojiro; Kousumi Yukihide; Kuramitsu Seiki; Yamaguchi Minoru; Kuyama Hiroki; Ando Eiji; Norioka Shigemi; Nakazawa Takashi; Okamura Taka-Aki; Yamamoto Hitoshi; Ueyama Norikazu
Rapid and sensitive amino-acid sequencing of cloning Thermus thermophilus HB8 ferredoxin by proteomics.
Journal of proteome research 2004;3(5):983-7.
2004: Kondo Naoyuki; Kuramitsu Seiki; Masui Ryoji
Biochemical characterization of TT1383 from Thermus thermophilus identifies a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTP.
Journal of biochemistry 2004;136(2):221-31.
2004: Yoshiba Sachiko; Ooga Takushi; Nakagawa Noriko; Shibata Takehiko; Inoue Yorinao; Yokoyama Shigeyuki; Kuramitsu Seiki; Masui Ryoji
Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal.
The Journal of biological chemistry 2004;279(35):37163-74.
2004: Hioki Yusaku; Ogasahara Kyoko; Lee Soo Jae; Ma Jichun; Ishida Masami; Yamagata Yuriko; Matsuura Yoshiki; Ota Motonori; Ikeguchi Mitsunori; Kuramitsu Seiki; Yutani Katsuhide
The crystal structure of the tryptophan synthase beta subunit from the hyperthermophile Pyrococcus furiosus. Investigation of stabilization factors.
European journal of biochemistry / FEBS 2004;271(13):2624-35.
2004: Torizawa Takuya; Ueda Takumi; Kuramitsu Seiki; Hitomi Kenichi; Todo Takeshi; Iwai Shigenori; Morikawa Kosuke; Shimada Ichio
Investigation of the cyclobutane pyrimidine dimer (CPD) photolyase DNA recognition mechanism by NMR analyses.
The Journal of biological chemistry 2004;279(31):32950-6.
2004: Hisanaga Yuko; Ago Hideo; Nakagawa Noriko; Hamada Keisuke; Ida Koh; Yamamoto Masaki; Hori Tetsuya; Arii Yasuhiro; Sugahara Mitsuaki; Kuramitsu Seiki; Yokoyama Shigeyuki; Miyano Masashi
Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer.
The Journal of biological chemistry 2004;279(30):31717-26.
2004: Hanawa-Suetsugu Kyoko; Sekine Shun-ichi; Sakai Hiroaki; Hori-Takemoto Chie; Terada Takaho; Unzai Satoru; Tame Jeremy R H; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of elongation factor P from Thermus thermophilus HB8.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9595-600.
2004: Wada Takashi; Shirouzu Mikako; Terada Takaho; Kamewari Yuki; Park Sam-Yong; Tame Jeremy R H; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8.
Proteins 2004;55(3):778-80.
2004: Katsura Yasuhiro; Shirouzu Mikako; Yamaguchi Hiroto; Ishitani Ryuichiro; Nureki Osamu; Kuramitsu Seiki; Hayashi Hideyuki; Yokoyama Shigeyuki
Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.
Proteins 2004;55(3):487-92.
2004: Iwai Takayoshi; Kuramitsu Seiki; Masui Ryoji
The Nudix hydrolase Ndx1 from Thermus thermophilus HB8 is a diadenosine hexaphosphate hydrolase with a novel activity.
The Journal of biological chemistry 2004;279(21):21732-9.
2004: Tahirov Tahir H; Inagaki Eiji; Ohshima Noriyasu; Kitao Tomoe; Kuroishi Chizu; Ukita Yoko; Takio Koji; Kobayashi Masanori; Kuramitsu Seiki; Yokoyama Shigeyuki; Miyano Masashi
Crystal structure of purine nucleoside phosphorylase from Thermus thermophilus.
Journal of molecular biology 2004;337(5):1149-60.
2004: Nakai Tadashi; Nakagawa Noriko; Maoka Nobuko; Masui Ryoji; Kuramitsu Seiki; Kamiya Nobuo
Ligand-induced conformational changes and a reaction intermediate in branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8, as revealed by X-ray crystallography.
Journal of molecular biology 2004;337(4):1011-33.
2004: Fukui Kenji; Masui Ryoji; Kuramitsu Seiki
Thermus thermophilus MutS2, a MutS paralogue, possesses an endonuclease activity promoted by MutL.
Journal of biochemistry 2004;135(3):375-84.
2004: Kukimoto-Niino Mutsuko; Murayama Kazutaka; Inoue Mio; Terada Takaho; Tame Jeremy R H; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of the GTP-binding protein Obg from Thermus thermophilus HB8.
Journal of molecular biology 2004;337(3):761-70.
2004: Nishio Kazuya; Nodake Yuichi; Hamada Kensaku; Suto Kyoko; Nakagawa Noriko; Kuramitsu Seiki; Miura Keiko
Expression, purification, crystallization and preliminary X-ray studies of geranylgeranyl diphosphate synthase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 1):178-80.
2004: Takahashi Hitomi; Inagaki Eiji; Fujimoto Yayoi; Kuroishi Chizu; Nodake Yuichi; Nakamura Yuki; Arisaka Fumio; Yutani Katsuhide; Kuramitsu Seiki; Yokoyama Shigeyuki; Yamamoto Masaki; Miyano Masashi; Tahirov Tahir H
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 1):97-104.
2003: Hoseki Jun; Okamoto Akihiro; Takada Naoki; Suenaga Atsushi; Futatsugi Noriyuki; Konagaya Akihiko; Taiji Makoto; Yano Takato; Kuramitsu Seiki; Kagamiyama Hiroyuki
Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution.
Biochemistry 2003;42(49):14469-75.
2003: Lokanath Neratur K; Shiromizu Ikuya; Nodake Yuichi; Sugahara Mitsuaki; Yokoyama Shigeyuki; Kuramitsu Seiki; Miyano Masashi; Kunishima Naoki
Crystallization and preliminary X-ray crystallographic studies of NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 12):2294-6.
2003: Hamada Keisuke; Ago Hideo; Sugahara Mitsuaki; Nodake Yuichi; Kuramitsu Seiki; Miyano Masashi
Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi).
The Journal of biological chemistry 2003;278(49):49183-90.
2003: Seto Azusa; Shirouzu Mikako; Terada Takaho; Murayama Kazutaka; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution.
Proteins 2003;53(3):768-71.
2003: Hoseki Jun; Okamoto Akihiro; Masui Ryoji; Shibata Takehiko; Inoue Yorinao; Yokoyama Shigeyuki; Kuramitsu Seiki
Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8.
Journal of molecular biology 2003;333(3):515-26.
2003: Takeishi Shunsaku; Nakagawa Noriko; Maoka Nobuko; Kihara Miho; Moriguchi Miki; Masui Ryoji; Kuramitsu Seiki
Crystallization and preliminary X-ray diffraction studies of nucleoside diphosphate kinase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1843-5.
2003: Yoshiba Sachiko; Nakagawa Noriko; Masui Ryoji; Shibata Takehiko; Inoue Yorinao; Yokoyama Shigeyuki; Kuramitsu Seiki
Overproduction, crystallization and preliminary diffraction data of ADP-ribose pyrophosphatase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1840-2.
2003: Sakai Hiroaki; Vassylyeva Marina N; Matsuura Takanori; Sekine Shun ichi; Gotoh Kazumi; Nishiyama Makoto; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Vassylyev Dmitry G; Yokoyama Shigeyuki
Crystal structure of a lysine biosynthesis enzyme, LysX, from Thermus thermophilus HB8.
Journal of molecular biology 2003;332(3):729-40.
2003: Vassylyeva Marina N; Sakai Hiroaki; Matsuura Takanori; Sekine Shun-ichi; Nishiyama Makoto; Terada Takaho; Shirouzu Mikako; Kuramitsu Seiki; Vassylyev Dmitry G; Yokoyama Shigeyuki
Cloning, expression, purification, crystallization and initial crystallographic analysis of the lysine-biosynthesis LysX protein from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 9):1651-2.
2003: Nakai Tadashi; Ishijima Jun; Masui Ryoji; Kuramitsu Seiki; Kamiya Nobuo
Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 9):1610-8.
2003: Handa Noriko; Terada Takaho; Kamewari Yuki; Hamana Hiroaki; Tame Jeremy R H; Park Sam-Yong; Kinoshita Kengo; Ota Motonori; Nakamura Haruki; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8.
Protein science : a publication of the Protein Society 2003;12(8):1621-32.
2003: Wada Takashi; Kuzuyama Tomohisa; Satoh Shinya; Kuramitsu Seiki; Yokoyama Shigeyuki; Unzai Satoru; Tame Jeremy R H; Park Sam-Yong
Crystal structure of 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
The Journal of biological chemistry 2003;278(32):30022-7.
2003: Wada Takashi; Shirouzu Mikako; Terada Takaho; Ishizuka Yoshiko; Matsuda Takayoshi; Kigawa Takanori; Kuramitsu Seiki; Park Sam Yong; Tame Jeremy R H; Yokoyama Shigeyuki
Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 7):1213-8.
2003: Kato Miyuki; Shirouzu Mikako; Terada Takaho; Yamaguchi Hiroto; Murayama Kazutaka; Sakai Hiroaki; Kuramitsu Seiki; Yokoyama Shigeyuki
Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8.
Journal of molecular biology 2003;329(5):903-11.
2003: Kaminishi Tatsuya; Sakai Hiroaki; Takemoto-Hori Chie; Terada Takaho; Nakagawa Noriko; Maoka Nobuko; Kuramitsu Seiki; Shirouzu Mikako; Yokoyama Shigeyuki
Crystallization and preliminary X-ray diffraction analysis of ribosomal protein L11 methyltransferase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 5):930-2.
2003: Nakai Tadashi; Nakagawa Noriko; Maoka Nobuko; Masui Ryoji; Kuramitsu Seiki; Kamiya Nobuo
Coexpression, purification, crystallization and preliminary X-ray characterization of glycine decarboxylase (P-protein) of the glycine-cleavage system from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 3):554-7.
2003: Someya Tatsuhiko; Nameki Nobukazu; Hosoi Haruko; Suzuki Sakura; Hatanaka Hideki; Fujii Michiko; Terada Takaho; Shirouzu Mikako; Inoue Yorinao; Shibata Takehiko; Kuramitsu Seiki; Yokoyama Shigeyuki; Kawai Gota
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus.
FEBS letters 2003;535(1-3):94-100.
2002: Vassylyeva Marina N; Lee Jookyung; Sekine Shun Ichi; Laptenko Oleg; Kuramitsu Seiki; Shibata Takehiko; Inoue Yorinao; Borukhov Sergei; Vassylyev Dmitry G; Yokoyama Shigeyuki
Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 9):1497-500.
2002: Shimomura Yoshimitsu; Sumiguchi-Agari Kazuko; Masui Ryoji; Kuramitsu Seiki; Fukuyama Keiichi
Overproduction, crystallization and preliminary X-ray diffraction analysis of a quinone oxidoreductase from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 8):1365-7.
2002: Nureki Osamu; Shirouzu Mikako; Hashimoto Kyoko; Ishitani Ryuichiro; Terada Takaho; Tamakoshi Masatada; Oshima Tairo; Chijimatsu Masao; Takio Koji; Vassylyev Dmitry G; Shibata Takehiko; Inoue Yorinao; Kuramitsu Seiki; Yokoyama Shigeyuki
An enzyme with a deep trefoil knot for the active-site architecture.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 7):1129-37.
2002: Ohtani Naoto; Nakagawa Noriko; Hoseki Jun; Ebihara Akio; Satoh Shinya; Agari Yoshihiro; Kobayashi Shin-ichiro; Agari Kazuko; Maoka Nobuko; Masui Ryoji; Miki Kunio; Yokoyama Shigeyuki; Kuramitsu Seiki
[An exhaustive overproduction of bacterial proteins]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2002;47(8 Suppl):1009-13.
2001: Yamagata A; Masui R; Kakuta Y; Kuramitsu S; Fukuyama K
Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain.
Nucleic acids research 2001;29(22):4617-24.
2001: Hashimoto Y; Yano T; Kuramitsu S; Kagamiyama H
Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker.
FEBS letters 2001;506(3):231-4.
2001: Ura H; Nakai T; Kawaguchi S I; Miyahara I; Hirotsu K; Kuramitsu S
Substrate recognition mechanism of thermophilic dual-substrate enzyme.
Journal of biochemistry 2001;130(1):89-98.
2001: Shimotohno A; Oue S; Yano T; Kuramitsu S; Kagamiyama H
Demonstration of the importance and usefulness of manipulating non-active-site residues in protein design.
Journal of biochemistry 2001;129(6):943-8.
2001: Kato R; Kataoka M; Kamikubo H; Kuramitsu S
Direct observation of three conformations of MutS protein regulated by adenine nucleotides.
Journal of molecular biology 2001;309(1):227-38.
2001: Yamagata Y; Ogasahara K; Hioki Y; Lee S J; Nakagawa A; Nakamura H; Ishida M; Kuramitsu S; Yutani K
Entropic stabilization of the tryptophan synthase alpha-subunit from a hyperthermophile, Pyrococcus furiosus. X-ray analysis and calorimetry.
The Journal of biological chemistry 2001;276(14):11062-71.
2001: Kawaguchi S; Müller J; Linde D; Kuramitsu S; Shibata T; Inoue Y; Vassylyev D G; Yokoyama S
The crystal structure of the ttCsaA protein: an export-related chaperone from Thermus thermophilus.
The EMBO journal 2001;20(3):562-9.
2001: Ura H; Harata K; Matsui I; Kuramitsu S
Temperature dependence of the enzyme-substrate recognition mechanism.
Journal of biochemistry 2001;129(1):173-8.
2000: Tachiki H; Kato R; Kuramitsu S
DNA binding and protein-protein interaction sites in MutS, a mismatched DNA recognition protein from Thermus thermophilus HB8.
The Journal of biological chemistry 2000;275(52):40703-9.
2000: Ohnishi T; Iwasaki H; Ishino Y; Kuramitsu S; Nakata A; Shinagawa H
Identification and characterization of Thermus thermophilus HB8 RuvA protein, the subunit of the RuvAB protein complex that promotes branch migration of Holliday junctions.
Genes & genetic systems 2000;75(5):233-43.
2000: Kato R; Kataoka M; Mikawa T; Masui R; Nakagawa N; Kamikubo H; Kuramitsu S
Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation.
FEBS letters 2000;482(1-2):159-62.
2000: Sugahara M; Mikawa T; Kumasaka T; Yamamoto M; Kato R; Fukuyama K; Inoue Y; Kuramitsu S
Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8.
The EMBO journal 2000;19(15):3857-69.
2000: Ishijima J; Nakai T; Kawaguchi S; Hirotsu K; Kuramitsu S
Free energy requirement for domain movement of an enzyme.
The Journal of biological chemistry 2000;275(25):18939-45.
2000: Yamagata A; Masui R; Kato R; Nakagawa N; Ozaki H; Sawai H; Kuramitsu S; Fukuyama K
Interaction of UvrA and UvrB proteins with a fluorescent single-stranded DNA. Implication for slow conformational change upon interaction of UvrB with DNA.
The Journal of biological chemistry 2000;275(18):13235-42.
2000: Isaev-Ivanov V V; Kozlov M G; Baitin D M; Masui R; Kuramitsu S; Lanzov V A
Fluorescence and excitation Escherichia coli RecA protein spectra analyzed separately for tyrosine and tryptophan residues.
Archives of biochemistry and biophysics 2000;376(1):124-40.
2000: Spies M; Kil Y; Masui R; Kato R; Kujo C; Ohshima T; Kuramitsu S; Lanzov V
The RadA protein from a hyperthermophilic archaeon Pyrobaculum islandicum is a DNA-dependent ATPase that exhibits two disparate catalytic modes, with a transition temperature at 75 degrees C.
European journal of biochemistry / FEBS 2000;267(4):1125-37.
2000: Matsui I; Matsui E; Sakai Y; Kikuchi H; Kawarabayasi Y; Ura H; Kawaguchi S; Kuramitsu S; Harata K
The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii.
The Journal of biological chemistry 2000;275(7):4871-9.
2000: Sugahara M; Mikawa T; Kato R; Fukuyama K; Kumasaka T; Yamamoto M; Inoue Y; Kuramitsu S
Crystallization and preliminary X-ray crystallographic studies of Thermus thermophilus HB8 MutM protein involved in repairs of oxidative DNA damage.
Journal of biochemistry 2000;127(1):9-11.
2000: Kil Y V; Baitin D M; Masui R; Bonch-Osmolovskaya E A; Kuramitsu S; Lanzov V A
Efficient strand transfer by the RadA recombinase from the hyperthermophilic archaeon Desulfurococcus amylolyticus.
Journal of bacteriology 2000;182(1):130-4.
1999: Nakagawa N; Sugahara M; Masui R; Kato R; Fukuyama K; Kuramitsu S
Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
Journal of biochemistry 1999;126(6):986-90.
1999: Hoseki J; Yano T; Koyama Y; Kuramitsu S; Kagamiyama H
Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus.
Journal of biochemistry 1999;126(5):951-6.
1999: Takano K; Yamagata Y; Funahashi J; Hioki Y; Kuramitsu S; Yutani K
Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry 1999;38(39):12698-708.
1999: Shibata A; Nakagawa N; Sugahara M; Masui R; Kato R; Kuramitsu S; Fukuyama K
Crystallization and preliminary X-ray diffraction studies of a DNA excision repair enzyme, UvrB, from Thermus thermophilus HB8.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 3):704-5.
1999: Kato R; Kuramitsu S
Characterization of thermostable RecA protein and analysis of its interaction with single-stranded DNA.
European journal of biochemistry / FEBS 1999;259(3):592-601.
1999: Masui R; Kuramitsu S
[What we can learn from the whole genome sequences of thermophiles]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1999;44(2):165-70.
1999: Wada T; Yamazaki T; Kuramitsu S; Kyogoku Y
Cloning of the RNA polymerase alpha subunit gene from Thermus thermophilus HB8 and characterization of the protein.
Journal of biochemistry 1999;125(1):143-50.
1998: Nobe Y; Kawaguchi S; Ura H; Nakai T; Hirotsu K; Kato R; Kuramitsu S
The novel substrate recognition mechanism utilized by aspartate aminotransferase of the extreme thermophile Thermus thermophilus HB8.
The Journal of biological chemistry 1998;273(45):29554-64.
1998: Masui R; Mikawa T; Kato R; Kuramitsu S
Characterization of the oligomeric states of RecA protein: monomeric RecA protein can form a nucleoprotein filament.
Biochemistry 1998;37(42):14788-97.
1998: Masui R; Kuramitsu S
Probing of DNA-binding sites of Escherichia coli RecA protein utilizing 1-anilinonaphthalene-8-sulfonic acid.
Biochemistry 1998;37(35):12133-43.
1998: Tachiki H; Kato R; Masui R; Hasegawa K; Itakura H; Fukuyama K; Kuramitsu S
Domain organization and functional analysis of Thermus thermophilus MutS protein.
Nucleic acids research 1998;26(18):4153-9.
1998: Kawaguchi S i; Kuramitsu S
Thermodynamics and molecular simulation analysis of hydrophobic substrate recognition by aminotransferases.
The Journal of biological chemistry 1998;273(29):18353-64.
1998: Mikawa T; Masui R; Kuramitsu S
RecA protein has extremely high cooperativity for substrate in its ATPase activity.
Journal of biochemistry 1998;123(3):450-7.
1998: Mikawa T; Kato R; Sugahara M; Kuramitsu S
Thermostable repair enzyme for oxidative DNA damage from extremely thermophilic bacterium, Thermus thermophilus HB8.
Nucleic acids research 1998;26(4):903-10.
1997: Petukhov M; Kil Y; Kuramitsu S; Lanzov V
Insights into thermal resistance of proteins from the intrinsic stability of their alpha-helices.
Proteins 1997;29(3):309-20.
1997: Hiramatsu Y; Kato R; Kawaguchi S; Kuramitsu S
Cloning and characterization of the uvrD gene from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Gene 1997;199(1-2):77-82.
1997: Masui R; Mikawa T; Kuramitsu S
Local folding of the N-terminal domain of Escherichia coli RecA controls protein-protein interaction.
The Journal of biological chemistry 1997;272(44):27707-15.
1997: Kato R; Hasegawa K; Hidaka Y; Kuramitsu S; Hoshino T
Characterization of a thermostable DNA photolyase from an extremely thermophilic bacterium, Thermus thermophilus HB27.
Journal of bacteriology 1997;179(20):6499-503.
1997: Nakagawa N; Masui R; Kato R; Kuramitsu S
Domain structure of Thermus thermophilus UvrB protein. Similarity in domain structure to a helicase.
The Journal of biological chemistry 1997;272(36):22703-13.
1997: Kawaguchi S; Nobe Y; Yasuoka J; Wakamiya T; Kusumoto S; Kuramitsu S
Enzyme flexibility: a new concept in recognition of hydrophobic substrates.
Journal of biochemistry 1997;122(1):55-63.
1997: Alexseyev A A; Baitin D M; Kuramitsu S; Ogawa T; Ogawa H; Lanzov V A
A recombinational defect in the C-terminal domain of Escherichia coli RecA2278-5 protein is compensated by protein binding to ATP.
Molecular microbiology 1997;23(2):255-65.
1996: Yamamoto N; Kato R; Kuramitsu S
Cloning, sequencing and expression of the uvrA gene from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Gene 1996;171(1):103-6.
1996: Kato R; Yamamoto N; Kito K; Kuramitsu S
ATPase activity of UvrB protein form Thermus thermophilus HB8 and its interaction with DNA.
The Journal of biological chemistry 1996;271(16):9612-8.
1996: Takamatsu S; Kato R; Kuramitsu S
Mismatch DNA recognition protein from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Nucleic acids research 1996;24(4):640-7.
1996: Okamoto A; Kato R; Masui R; Yamagishi A; Oshima T; Kuramitsu S
An aspartate aminotransferase from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Journal of biochemistry 1996;119(1):135-44.
1995: Mikawa T; Masui R; Ogawa T; Ogawa H; Kuramitsu S
N-terminal 33 amino acid residues of Escherichia coli RecA protein contribute to its self-assembly.
Journal of molecular biology 1995;250(4):471-83.
1995: Kawaguchi S; Kuramitsu S
Separation of heat-stable proteins from Thermus thermophilus HB8 by two-dimensional electrophoresis.
Electrophoresis 1995;16(6):1060-6.
1994: Metzler D E; Metzler C M; Scott R D; Mollova E T; Kagamiyama H; Yano T; Kuramitsu S; Hayashi H; Hirotsu K; Miyahara I
NMR studies of 1H resonances in the 10-18-ppm range for aspartate aminotransferase from Escherichia coli.
The Journal of biological chemistry 1994;269(45):28027-33.
1994: Watanabe R; Masui R; Mikawa T; Takamatsu S; Kato R; Kuramitsu S
Interaction of Escherichia coli RecA protein with ATP and its analogues.
Journal of biochemistry 1994;116(5):960-6.
1994: Okamoto A; Higuchi T; Hirotsu K; Kuramitsu S; Kagamiyama H
X-ray crystallographic study of pyridoxal 5'-phosphate-type aspartate aminotransferases from Escherichia coli in open and closed form.
Journal of biochemistry 1994;116(1):95-107.
1994: Kawaguchi S; Kuramitsu S
[Mechanism of enzyme reaction]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1994;39(7):1083-90.
1994: Miyazawa K; Kawaguchi S; Okamoto A; Kato R; Ogawa T; Kuramitsu S
Construction of aminotransferase chimeras and analysis of their substrate specificity.
Journal of biochemistry 1994;115(3):568-77.
1994: Matsushima Y; Kim D W; Yoshimura T; Kuramitsu S; Kagamiyama H; Esaki N; Soda K
Replacement of active-site lysine-239 of thermostable aspartate aminotransferase by S-(2-aminoethyl)cysteine: properties of the mutant enzyme.
Journal of biochemistry 1994;115(1):108-12.
1993: Kato R; Kuramitsu S
RecA protein from an extremely thermophilic bacterium, Thermus thermophilus HB8.
Journal of biochemistry 1993;114(6):926-9.
1992: Tanaka T; Yamamoto S; Taniguchi M; Hayashi H; Kuramitsu S; Kagamiyama H; Oi S
Further studies on aspartate aminotransferase of thermophilic methanogens by analysis of general properties, bound cofactors, and subunit structures.
Journal of biochemistry 1992;112(6):811-5.
1992: Kuramitsu S
[Protein engineering. II: Catalytic mechanism of aminotransferases]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1992;37(13):2243-56.
1992: Yano T; Kuramitsu S; Tanase S; Morino Y; Kagamiyama H
Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase: the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5'-phosphate.
Biochemistry 1992;31(25):5878-87.
1991: Inoue K; Kuramitsu S; Okamoto A; Hirotsu K; Higuchi T; Kagamiyama H
Site-directed mutagenesis of Escherichia coli aspartate aminotransferase: role of Tyr70 in the catalytic processes.
Biochemistry 1991;30(31):7796-801.
1991: Hayashi H; Kuramitsu S; Kagamiyama H
Replacement of an interdomain residue Val39 of Escherichia coli aspartate aminotransferase affects the catalytic competence without altering the substrate specificity of the enzyme.
Journal of biochemistry 1991;109(5):699-704.
1991: Yano T; Kuramitsu S; Tanase S; Morino Y; Hiromi K; Kagamiyama H
The role of His143 in the catalytic mechanism of Escherichia coli aspartate aminotransferase.
The Journal of biological chemistry 1991;266(10):6079-85.
1991: Inoue K; Kuramitsu S; Okamoto A; Hirotsu K; Higuchi T; Morino Y; Kagamiyama H
Tyr225 in aspartate aminotransferase: contribution of the hydrogen bond between Tyr225 and coenzyme to the catalytic reaction.
Journal of biochemistry 1991;109(4):570-6.
1991: Sung M H; Tanizawa K; Tanaka H; Kuramitsu S; Kagamiyama H; Hirotsu K; Okamoto A; Higuchi T; Soda K
Thermostable aspartate aminotransferase from a thermophilic Bacillus species. Gene cloning, sequence determination, and preliminary x-ray characterization.
The Journal of biological chemistry 1991;266(4):2567-72.
1990: Kamitori S; Okamoto A; Hirotsu K; Higuchi T; Kuramitsu S; Kagamiyama H; Matsuura Y; Katsube Y
Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution.
Journal of biochemistry 1990;108(2):175-84.
1990: Kuramitsu S; Hiromi K; Hayashi H; Morino Y; Kagamiyama H
Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity.
Biochemistry 1990;29(23):5469-76.
1990: Sung M H; Tanizawa K; Tanaka H; Kuramitsu S; Kagamiyama H; Soda K
Purification and characterization of thermostable aspartate aminotransferase from a thermophilic Bacillus species.
Journal of bacteriology 1990;172(3):1345-51.
1989: Inoue Y; Kuramitsu S; Inoue K; Kagamiyama H; Hiromi K; Tanase S; Morino Y
Substitution of a lysyl residue for arginine 386 of Escherichia coli aspartate aminotransferase.
The Journal of biological chemistry 1989;264(16):9673-81.
1989: Kamitori S; Odagaki Y; Inoue K; Kuramitsu S; Kagamiyama H; Matsuura Y; Higuchi T
Crystallization and preliminary X-ray characterization of branched-chain amino acid aminotransferase from Escherichia coli.
Journal of biochemistry 1989;105(5):671-2.
1989: Tanizawa K; Asano S; Masu Y; Kuramitsu S; Kagamiyama H; Tanaka H; Soda K
The primary structure of thermostable D-amino acid aminotransferase from a thermophilic Bacillus species and its correlation with L-amino acid aminotransferases.
The Journal of biological chemistry 1989;264(5):2450-4.
1988: Inoue K; Kuramitsu S; Aki K; Watanabe Y; Takagi T; Nishigai M; Ikai A; Kagamiyama H
Branched-chain amino acid aminotransferase of Escherichia coli: overproduction and properties.
Journal of biochemistry 1988;104(5):777-84.
1988: Kamitori S; Hirotsu K; Higuchi T; Kondo K; Inoue K; Kuramitsu S; Kagamiyama H; Higuchi Y; Yasuoka N; Kusunoki M
Three-dimensional structure of aspartate aminotransferase from Escherichia coli at 2.8 A resolution.
Journal of biochemistry 1988;104(3):317-8.
1988: Ono T; Tojo H; Kuramitsu S; Kagamiyama H; Okamoto M
Purification and characterization of a membrane-associated phospholipase A2 from rat spleen. Its comparison with a cytosolic phospholipase A2 S-1.
The Journal of biological chemistry 1988;263(12):5732-8.
1988: Tojo H; Ono T; Kuramitsu S; Kagamiyama H; Okamoto M
A phospholipase A2 in the supernatant fraction of rat spleen. Its similarity to rat pancreatic phospholipase A2.
The Journal of biological chemistry 1988;263(12):5724-31.
1987: Kamitori S; Hirotsu K; Higuchi T; Kondo K; Inoue K; Kuramitsu S; Kagamiyama H; Higuchi Y; Yasuoka N; Kusunoki M
Overproduction and preliminary X-ray characterization of aspartate aminotransferase from Escherichia coli.
Journal of biochemistry 1987;101(3):813-6.

Sign-in to see more

Sign-in free and Explore the Exciting World of BiomedExperts:

NetworkView

Seiki Kuramitsu

Research Profile (preview)

Living Beings

Procedures

Genes & Molecular Sequences

Concepts & Ideas

Chemicals & Drugs

Phenomena

Network (preview)

Publications

Sign in free and see...

Visualized networks:

GeoTargeted Searches:

Research Profiles:

Geonetwork of Seiki Kuramitsu (preview)

All Publications