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Robert Bambara

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Co-Publications
Name
36
Fay, Philip
30
Hilf, Russell
19
Balakrishnan, Mini
16
Klinge, Carolyn
15
Palaniappan, Chockalingam
13
Henricksen, Leigh
12
Roques, Bernard
11
Muyan, Mesut
11
Turchi, John
10
DeStefano, Jeffrey
9
Kim, Baek
7
Kao, Hui-I
7
Hanson, Mark Nils
7
Demeter, Lisa
7
Wisniewski, Michele

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Publications

TOP 3
Balakrishnan Lata; Brandt Patrick D; Lindsey-Boltz Laura A; Sancar Aziz; Bambara Robert A
Long patch base excision repair proceeds via coordinated stimulation of the multienzyme DNA repair complex.
Rigby Sean T; Rose April E; Hanson Mark N; Bambara Robert A
Mechanism analysis indicates that recombination events in HIV-1 initiate and complete over short distances, explaining why recombination frequencies are similar in different sections of the genome.
Stewart Jason A; Campbell Judith L; Bambara Robert A
Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae.

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All Publications

2009: Balakrishnan Lata; Brandt Patrick D; Lindsey-Boltz Laura A; Sancar Aziz; Bambara Robert A
Long patch base excision repair proceeds via coordinated stimulation of the multienzyme DNA repair complex.
The Journal of biological chemistry 2009;284(22):15158-72.
2009: Rigby Sean T; Rose April E; Hanson Mark N; Bambara Robert A
Mechanism analysis indicates that recombination events in HIV-1 initiate and complete over short distances, explaining why recombination frequencies are similar in different sections of the genome.
Journal of molecular biology 2009;388(1):30-47.
2009: Stewart Jason A; Campbell Judith L; Bambara Robert A
Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae.
The Journal of biological chemistry 2009;284(13):8283-91.
2008: Stewart Jason A; Miller Adam S; Campbell Judith L; Bambara Robert A
Dynamic removal of replication protein A by Dna2 facilitates primer cleavage during Okazaki fragment processing in Saccharomyces cerevisiae.
The Journal of biological chemistry 2008;283(46):31356-65.
2008: Rossi Marie L; Pike Jason E; Wang Wensheng; Burgers Peter M J; Campbell Judith L; Bambara Robert A
Pif1 helicase directs eukaryotic Okazaki fragments toward the two-nuclease cleavage pathway for primer removal.
The Journal of biological chemistry 2008;283(41):27483-93.
2008: Bartos Jeremy D; Willmott Lyndsay J; Binz Sara K; Wold Marc S; Bambara Robert A
Catalysis of strand annealing by replication protein A derives from its strand melting properties.
The Journal of biological chemistry 2008;283(31):21758-68.
2008: Gehen S C; Staversky R J; Bambara R A; Keng P C; O'Reilly M A
hSMG-1 and ATM sequentially and independently regulate the G1 checkpoint during oxidative stress.
Oncogene 2008;27(29):4065-74.
2008: Basu Vandana Purohit; Song Min; Gao Lu; Rigby Sean T; Hanson Mark Nils; Bambara Robert A
Strand transfer events during HIV-1 reverse transcription.
Virus research 2008;134(1-2):19-38.
2008: Li Xiaodong; Nott Stephanie L; Huang Yanfang; Hilf Russell; Bambara Robert A; Qiu Xing; Yakovlev Andrei; Welle Stephen; Muyan Mesut
Gene expression profiling reveals that the regulation of estrogen-responsive element-independent genes by 17 beta-estradiol-estrogen receptor beta is uncoupled from the induction of phenotypic changes in cell models.
Journal of molecular endocrinology 2008;40(5):211-29.
2008: Gao Lu; Hanson Mark Nils; Balakrishnan Mini; Boyer Paul L; Roques Bernard P; Hughes Stephen H; Kim Baek; Bambara Robert A
Apparent defects in processive DNA synthesis, strand transfer, and primer elongation of Met-184 mutants of HIV-1 reverse transcriptase derive solely from a dNTP utilization defect.
The Journal of biological chemistry 2008;283(14):9196-205.
2008: Jamburuthugoda Varuni K; Santos-Velazquez Jose M; Skasko Mark; Operario Darwin J; Purohit Vandana; Chugh Pauline; Szymanski Erika A; Wedekind Joseph E; Bambara Robert A; Kim Baek
Reduced dNTP binding affinity of 3TC-resistant M184I HIV-1 reverse transcriptase variants responsible for viral infection failure in macrophage.
The Journal of biological chemistry 2008;283(14):9206-16.
2008: Song Min; Basu Vandana P; Hanson Mark N; Roques Bernard P; Bambara Robert A
Proximity and branch migration mechanisms in HIV-1 minus strand strong stop DNA transfer.
The Journal of biological chemistry 2008;283(6):3141-50.
2007: Purohit Vandana; Roques Bernard P; Kim Baek; Bambara Robert A
Mechanisms that prevent template inactivation by HIV-1 reverse transcriptase RNase H cleavages.
The Journal of biological chemistry 2007;282(17):12598-609.
2007: Gao Lu; Balakrishnan Mini; Roques Bernard P; Bambara Robert A
Insights into the multiple roles of pausing in HIV-1 reverse transcriptase-promoted strand transfers.
The Journal of biological chemistry 2007;282(9):6222-31.
2007: Gehen Sean C; Vitiello Peter F; Bambara Robert A; Keng Peter C; O'Reilly Michael A
Downregulation of PCNA potentiates p21-mediated growth inhibition in response to hyperoxia.
American journal of physiology. Lung cellular and molecular physiology 2007;292(3):L716-24.
2006: Stewart Jason A; Campbell Judith L; Bambara Robert A
Flap endonuclease disengages Dna2 helicase/nuclease from Okazaki fragment flaps.
The Journal of biological chemistry 2006;281(50):38565-72.
2006: Hanson Mark Nils; Balakrishnan Mini; Roques Bernard P; Bambara Robert A
Evidence that creation of invasion sites determines the rate of strand transfer mediated by HIV-1 reverse transcriptase.
Journal of molecular biology 2006;363(5):878-90.
2006: Bartos Jeremy D; Wang Wensheng; Pike Jason E; Bambara Robert A
Mechanisms by which Bloom protein can disrupt recombination intermediates of Okazaki fragment maturation.
The Journal of biological chemistry 2006;281(43):32227-39.
2006: Operario Darwin J; Balakrishnan Mini; Bambara Robert A; Kim Baek
Reduced dNTP interaction of human immunodeficiency virus type 1 reverse transcriptase promotes strand transfer.
The Journal of biological chemistry 2006;281(43):32113-21.
2006: Rossi Marie L; Bambara Robert A
Reconstituted Okazaki fragment processing indicates two pathways of primer removal.
The Journal of biological chemistry 2006;281(36):26051-61.
2006: Brandt Patrick D; Helt Christopher E; Keng Peter C; Bambara Robert A
The Rad9 protein enhances survival and promotes DNA repair following exposure to ionizing radiation.
Biochemical and biophysical research communications 2006;347(1):232-7.
2006: Song Min; Balakrishnan Mini; Chen Yan; Roques Bernard P; Bambara Robert A
Stimulation of HIV-1 minus strand strong stop DNA transfer by genomic sequences 3' of the primer binding site.
The Journal of biological chemistry 2006;281(34):24227-35.
2006: Domaoal Robert A; Bambara Robert A; Demeter Lisa M
HIV-1 reverse transcriptase mutants resistant to nonnucleoside reverse transcriptase inhibitors do not adversely affect DNA synthesis: pre-steady-state and steady-state kinetic studies.
Journal of acquired immune deficiency syndromes (1999) 2006;42(4):405-11.
2006: Wang Wensheng; Lindsey-Boltz Laura A; Sancar Aziz; Bambara Robert A
Mechanism of stimulation of human DNA ligase I by the Rad9-rad1-Hus1 checkpoint complex.
The Journal of biological chemistry 2006;281(30):20865-72.
2006: Wang J; Dykes C; Domaoal R A; Koval C E; Bambara R A; Demeter L M
The HIV-1 reverse transcriptase mutants G190S and G190A, which confer resistance to non-nucleoside reverse transcriptase inhibitors, demonstrate reductions in RNase H activity and DNA synthesis from tRNA(Lys, 3) that correlate with reductions in replication efficiency.
Virology 2006;348(2):462-74.
2006: Rossi Marie L; Purohit Vandana; Brandt Patrick D; Bambara Robert A
Lagging strand replication proteins in genome stability and DNA repair.
Chemical reviews 2006;106(2):453-73.
2006: Huang Jing; Li Xiaodong; Qiao Tao; Bambara Robert A; Hilf Russell; Muyan Mesut
A tale of two estrogen receptors (ERs): how differential ER-estrogen responsive element interactions contribute to subtype-specific transcriptional responses.
Nuclear receptor signaling 2006;4():e015.
2005: Huang Jing; Li Xiaodong; Hilf Russell; Bambara Robert A; Muyan Mesut
Molecular basis of therapeutic strategies for breast cancer.
Current drug targets. Immune, endocrine and metabolic disorders 2005;5(4):379-96.
2005: Purohit Vandana; Balakrishnan Mini; Kim Baek; Bambara Robert A
Evidence that HIV-1 reverse transcriptase employs the DNA 3' end-directed primary/secondary RNase H cleavage mechanism during synthesis and strand transfer.
The Journal of biological chemistry 2005;280(49):40534-43.
2005: Hanson Mark Nils; Balakrishnan Mini; Roques Bernard P; Bambara Robert A
Effects of donor and acceptor RNA structures on the mechanism of strand transfer by HIV-1 reverse transcriptase.
Journal of molecular biology 2005;353(4):772-87.
2005: Huang Jing; Li Xiaodong; Maguire Casey A; Hilf Russell; Bambara Robert A; Muyan Mesut
Binding of estrogen receptor beta to estrogen response element in situ is independent of estradiol and impaired by its amino terminus.
Molecular endocrinology (Baltimore, Md.) 2005;19(11):2696-712.
2005: Helt Christopher E; Wang Wensheng; Keng Peter C; Bambara Robert A
Evidence that DNA damage detection machinery participates in DNA repair.
Cell cycle (Georgetown, Tex.) 2005;4(4):529-32.
2005: Chen Yan; Balakrishnan Mini; Roques Bernard P; Bambara Robert A
Acceptor RNA cleavage profile supports an invasion mechanism for HIV-1 minus strand transfer.
The Journal of biological chemistry 2005;280(15):14443-52.
2005: Wang Wensheng; Bambara Robert A
Human Bloom protein stimulates flap endonuclease 1 activity by resolving DNA secondary structure.
The Journal of biological chemistry 2005;280(7):5391-9.
2005: Helt Christopher E; Cliby William A; Keng Peter C; Bambara Robert A; O'Reilly Michael A
Ataxia telangiectasia mutated (ATM) and ATM and Rad3-related protein exhibit selective target specificities in response to different forms of DNA damage.
The Journal of biological chemistry 2005;280(2):1186-92.
2004: Renda Matthew J; Bradel-Tretheway Birgit; Planelles Vicente; Bambara Robert A; Dewhurst Stephen
Inhibition of HIV type 1 replication using lentiviral-mediated delivery of mutant tRNA(Lys3)A58U.
AIDS research and human retroviruses 2004;20(12):1324-34.
2004: Diamond Tracy L; Roshal Mikhail; Jamburuthugoda Varuni K; Reynolds Holly M; Merriam Aaron R; Lee Kwi Y; Balakrishnan Mini; Bambara Robert A; Planelles Vicente; Dewhurst Stephen; Kim Baek
Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase.
The Journal of biological chemistry 2004;279(49):51545-53.
2004: Kao Hui-I; Campbell Judith L; Bambara Robert A
Dna2p helicase/nuclease is a tracking protein, like FEN1, for flap cleavage during Okazaki fragment maturation.
The Journal of biological chemistry 2004;279(49):50840-9.
2004: Wang Wensheng; Brandt Patrick; Rossi Marie L; Lindsey-Boltz Laura; Podust Vladimir; Fanning Ellen; Sancar Aziz; Bambara Robert A
The human Rad9-Rad1-Hus1 checkpoint complex stimulates flap endonuclease 1.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(48):16762-7.
2004: Li Xiaodong; Huang Jing; Yi Ping; Bambara Robert A; Hilf Russell; Muyan Mesut
Single-chain estrogen receptors (ERs) reveal that the ERalpha/beta heterodimer emulates functions of the ERalpha dimer in genomic estrogen signaling pathways.
Molecular and cellular biology 2004;24(17):7681-94.
2004: Dykes Carrie; Balakrishnan Mini; Planelles Vicente; Zhu Yonghong; Bambara Robert A; Demeter Lisa M
Identification of a preferred region for recombination and mutation in HIV-1 gag.
Virology 2004;326(2):262-79.
2004: Liu Yuan; Zhang Haihua; Veeraraghavan Janaki; Bambara Robert A; Freudenreich Catherine H
Saccharomyces cerevisiae flap endonuclease 1 uses flap equilibration to maintain triplet repeat stability.
Molecular and cellular biology 2004;24(9):4049-64.
2004: Huang Jing; Li Xiaodong; Yi Ping; Hilf Russell; Bambara Robert A; Muyan Mesut
Targeting estrogen responsive elements (EREs): design of potent transactivators for ERE-containing genes.
Molecular and cellular endocrinology 2004;218(1-2):65-78.
2004: Weiss Kellie K; Chen Renxiang; Skasko Mark; Reynolds Holly M; Lee Kwi; Bambara Robert A; Mansky Louis M; Kim Baek
A role for dNTP binding of human immunodeficiency virus type 1 reverse transcriptase in viral mutagenesis.
Biochemistry 2004;43(15):4490-500.
2004: Kao Hui-I; Veeraraghavan Janaki; Polaczek Piotr; Campbell Judith L; Bambara Robert A
On the roles of Saccharomyces cerevisiae Dna2p and Flap endonuclease 1 in Okazaki fragment processing.
The Journal of biological chemistry 2004;279(15):15014-24.
2004: Helt Christopher E; Staversky Rhonda J; Lee Yi-Jang; Bambara Robert A; Keng Peter C; O'Reilly Michael A
The Cdk and PCNA domains on p21Cip1 both function to inhibit G1/S progression during hyperoxia.
American journal of physiology. Lung cellular and molecular physiology 2004;286(3):L506-13.
2004: Sharma Sudha; Otterlei Marit; Sommers Joshua A; Driscoll Henry C; Dianov Grigory L; Kao Hui-I; Bambara Robert A; Brosh Robert M
WRN helicase and FEN-1 form a complex upon replication arrest and together process branchmigrating DNA structures associated with the replication fork.
Molecular biology of the cell 2004;15(2):734-50.
2004: Liu Yuan; Kao Hui-I; Bambara Robert A
Flap endonuclease 1: a central component of DNA metabolism.
Annual review of biochemistry 2004;73():589-615.
2003: Veeraraghavan Janaki; Rossi Marie L; Bambara Robert A
Analysis of DNA replication intermediates suggests mechanisms of repeat sequence expansion.
The Journal of biological chemistry 2003;278(44):42854-66.
2003: Chen Yan; Balakrishnan Mini; Roques Bernard P; Bambara Robert A
Steps of the acceptor invasion mechanism for HIV-1 minus strand strong stop transfer.
The Journal of biological chemistry 2003;278(40):38368-75.
2003: Roda Ricardo H; Balakrishnan Mini; Hanson Mark N; Wohrl Birgitta M; Le Grice Stuart F J; Roques Bernard P; Gorelick Robert J; Bambara Robert A
Role of the Reverse Transcriptase, Nucleocapsid Protein, and Template Structure in the Two-step Transfer Mechanism in Retroviral Recombination.
The Journal of biological chemistry 2003;278(34):31536-46.
2003: Diamond Tracy L; Souroullas George; Weiss Kellie K; Lee Kwi Y; Bambara Robert A; Dewhurst Stephen; Kim Baek
Mechanistic understanding of an altered fidelity simian immunodeficiency virus reverse transcriptase mutation, V148I, identified in a pig-tailed macaque.
The Journal of biological chemistry 2003;278(32):29913-24.
2003: Balakrishnan Mini; Roques Bernard P; Fay Philip J; Bambara Robert A
Template dimerization promotes an acceptor invasion-induced transfer mechanism during human immunodeficiency virus type 1 minus-strand synthesis.
Journal of virology 2003;77(8):4710-21.
2003: Liu Yuan; Bambara Robert A
Analysis of human flap endonuclease 1 mutants reveals a mechanism to prevent triplet repeat expansion.
The Journal of biological chemistry 2003;278(16):13728-39.
2003: Chen Yan; Balakrishnan Mini; Roques Bernard P; Fay Philip J; Bambara Robert A
Mechanism of minus strand strong stop transfer in HIV-1 reverse transcription.
The Journal of biological chemistry 2003;278(10):8006-17.
2003: Kao Hui-I; Bambara Robert A
The protein components and mechanism of eukaryotic Okazaki fragment maturation.
Critical reviews in biochemistry and molecular biology 2003;38(5):433-52.
2002: Roda Ricardo H; Balakrishnan Mini; Kim Jin K; Roques Bernard P; Fay Philip J; Bambara Robert A
Strand transfer occurs in retroviruses by a pause-initiated two-step mechanism.
The Journal of biological chemistry 2002;277(49):46900-11.
2002: Huggins Christine F; Chafin David R; Aoyagi Sayura; Henricksen Leigh A; Bambara Robert A; Hayes Jeffrey J
Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes.
Molecular cell 2002;10(5):1201-11.
2002: Ranalli Tamara A; Tom Samson; Bambara Robert A
AP endonuclease 1 coordinates flap endonuclease 1 and DNA ligase I activity in long patch base excision repair.
The Journal of biological chemistry 2002;277(44):41715-24.
2002: Yi Ping; Bhagat Sumedha; Hilf Russell; Bambara Robert A; Muyan Mesut
Differences in the abilities of estrogen receptors to integrate activation functions are critical for subtype-specific transcriptional responses.
Molecular endocrinology (Baltimore, Md.) 2002;16(8):1810-27.
2002: Wisniewski Michele; Chen Yan; Balakrishnan Mini; Palaniappan Chockalingam; Roques Bernard P; Fay Philip J; Bambara Robert A
Substrate requirements for secondary cleavage by HIV-1 reverse transcriptase RNase H.
The Journal of biological chemistry 2002;277(32):28400-10.
2002: Sathya Ganesan; Yi Ping; Bhagat Sumedha; Bambara Robert A; Hilf Russell; Muyan Mesut
Structural regions of ERalpha critical for synergistic transcriptional responses contain co-factor interacting surfaces.
Molecular and cellular endocrinology 2002;192(1-2):171-85.
2002: Henricksen Leigh A; Veeraraghavan Janaki; Chafin David R; Bambara Robert A
DNA ligase I competes with FEN1 to expand repetitive DNA sequences in vitro.
The Journal of biological chemistry 2002;277(25):22361-9.
2002: Weiss Kellie K; Bambara Robert A; Kim Baek
Mechanistic role of residue Gln151 in error prone DNA synthesis by human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT). Pre-steady state kinetic study of the Q151N HIV-1 RT mutant with increased fidelity.
The Journal of biological chemistry 2002;277(25):22662-9.
2002: Yi Ping; Driscoll Mark D; Huang Jing; Bhagat Sumedha; Hilf Russell; Bambara Robert A; Muyan Mesut
The effects of estrogen-responsive element- and ligand-induced structural changes on the recruitment of cofactors and transcriptional responses by ER alpha and ER beta.
Molecular endocrinology (Baltimore, Md.) 2002;16(4):674-93.
2002: Kao Hui-I; Henricksen Leigh A; Liu Yuan; Bambara Robert A
Cleavage specificity of Saccharomyces cerevisiae flap endonuclease 1 suggests a double-flap structure as the cellular substrate.
The Journal of biological chemistry 2002;277(17):14379-89.
2002: Ranalli Tamara A; DeMott Michael S; Bambara Robert A
Mechanism underlying replication protein a stimulation of DNA ligase I.
The Journal of biological chemistry 2002;277(3):1719-27.
2001: Tom S; Ranalli T A; Podust V N; Bambara R A
Regulatory roles of p21 and apurinic/apyrimidinic endonuclease 1 in base excision repair.
The Journal of biological chemistry 2001;276(52):48781-9.
2001: Renda M J; Rosenblatt J D; Klimatcheva E; Demeter L M; Bambara R A; Planelles V
Mutation of the methylated tRNA(Lys)(3) residue A58 disrupts reverse transcription and inhibits replication of human immunodeficiency virus type 1.
Journal of virology 2001;75(20):9671-8.
2001: Muyan M; Yi P; Sathya G; Willmert L J; Driscoll M D; Hilf R; Bambara R A
Fusion estrogen receptor proteins: toward the development of receptor-based agonists and antagonists.
Molecular and cellular endocrinology 2001;182(2):249-63.
2001: Balakrishnan M; Fay P J; Bambara R A
The kissing hairpin sequence promotes recombination within the HIV-I 5' leader region.
The Journal of biological chemistry 2001;276(39):36482-92.
2001: Xie Y; Liu Y; Argueso J L; Henricksen L A; Kao H I; Bambara R A; Alani E
Identification of rad27 mutations that confer differential defects in mutation avoidance, repeat tract instability, and flap cleavage.
Molecular and cellular biology 2001;21(15):4889-99.
2001: Tom S; Henricksen L A; Park M S; Bambara R A
DNA ligase I and proliferating cell nuclear antigen form a functional complex.
The Journal of biological chemistry 2001;276(27):24817-25.
2001: Archer R H; Wisniewski M; Bambara R A; Demeter L M
The Y181C mutant of HIV-1 reverse transcriptase resistant to nonnucleoside reverse transcriptase inhibitors alters the size distribution of RNase H cleavages.
Biochemistry 2001;40(13):4087-95.
2000: Wisniewski M; Balakrishnan M; Palaniappan C; Fay P J; Bambara R A
The sequential mechanism of HIV reverse transcriptase RNase H.
The Journal of biological chemistry 2000;275(48):37664-71.
2000: Wisniewski M; Balakrishnan M; Palaniappan C; Fay P J; Bambara R A
Unique progressive cleavage mechanism of HIV reverse transcriptase RNase H.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(22):11978-83.
2000: Chafin D R; Vitolo J M; Henricksen L A; Bambara R A; Hayes J J
Human DNA ligase I efficiently seals nicks in nucleosomes.
The EMBO journal 2000;19(20):5492-501.
2000: Archer R H; Dykes C; Gerondelis P; Lloyd A; Fay P; Reichman R C; Bambara R A; Demeter L M
Mutants of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase resistant to nonnucleoside reverse transcriptase inhibitors demonstrate altered rates of RNase H cleavage that correlate with HIV-1 replication fitness in cell culture.
Journal of virology 2000;74(18):8390-401.
2000: Henricksen L A; Tom S; Liu Y; Bambara R A
Inhibition of flap endonuclease 1 by flap secondary structure and relevance to repeat sequence expansion.
The Journal of biological chemistry 2000;275(22):16420-7.
2000: Tom S; Henricksen L A; Bambara R A
Mechanism whereby proliferating cell nuclear antigen stimulates flap endonuclease 1.
The Journal of biological chemistry 2000;275(14):10498-505.
1999: Bornarth C J; Ranalli T A; Henricksen L A; Wahl A F; Bambara R A
Effect of flap modifications on human FEN1 cleavage.
Biochemistry 1999;38(40):13347-54.
1999: Wisniewski M; Palaniappan C; Fu Z; Le Grice S F; Fay P; Bambara R A
Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity.
The Journal of biological chemistry 1999;274(40):28175-84.
1999: Gerondelis P; Archer R H; Palaniappan C; Reichman R C; Fay P J; Bambara R A; Demeter L M
The P236L delavirdine-resistant human immunodeficiency virus type 1 mutant is replication defective and demonstrates alterations in both RNA 5'-end- and DNA 3'-end-directed RNase H activities.
Journal of virology 1999;73(7):5803-13.
1999: Driscoll M D; Sathya G; Saidi L F; DeMott M S; Hilf R; Bambara R A
An explanation for observed estrogen receptor binding to single-stranded estrogen-responsive element DNA.
Molecular endocrinology (Baltimore, Md.) 1999;13(6):958-68.
1999: Rumbaugh J A; Henricksen L A; DeMott M S; Bambara R A
Cleavage of substrates with mismatched nucleotides by Flap endonuclease-1. Implications for mammalian Okazaki fragment processing.
The Journal of biological chemistry 1999;274(21):14602-8.
1998: Driscoll M D; Sathya G; Muyan M; Klinge C M; Hilf R; Bambara R A
Sequence requirements for estrogen receptor binding to estrogen response elements.
The Journal of biological chemistry 1998;273(45):29321-30.
1998: Rumbaugh J A; Fuentes G M; Bambara R A
Processing of an HIV replication intermediate by the human DNA replication enzyme FEN1.
The Journal of biological chemistry 1998;273(44):28740-5.
1998: DeMott M S; Zigman S; Bambara R A
Replication protein A stimulates long patch DNA base excision repair.
The Journal of biological chemistry 1998;273(42):27492-8.
1998: Klinge C M; Studinski-Jones A L; Kulakosky P C; Bambara R A; Hilf R
Comparison of tamoxifen ligands on estrogen receptor interaction with estrogen response elements.
Molecular and cellular endocrinology 1998;143(1-2):79-90.
1998: Murante R S; Henricksen L A; Bambara R A
Junction ribonuclease: an activity in Okazaki fragment processing.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(5):2244-9.
1998: Palaniappan C; Kim J K; Wisniewski M; Fay P J; Bambara R A
Control of initiation of viral plus strand DNA synthesis by HIV reverse transcriptase.
The Journal of biological chemistry 1998;273(7):3808-16.
1998: Henricksen L A; Bambara R A
Multiprotein reactions in mammalian DNA replication.
Leukemia research 1998;22(1):1-5.
1997: Sathya G; Li W; Klinge C M; Anolik J H; Hilf R; Bambara R A
Effects of multiple estrogen responsive elements, their spacing, and location on estrogen response of reporter genes.
Molecular endocrinology (Baltimore, Md.) 1997;11(13):1994-2003.
1997: Klinge C M; Silver B F; Driscoll M D; Sathya G; Bambara R A; Hilf R
Chicken ovalbumin upstream promoter-transcription factor interacts with estrogen receptor, binds to estrogen response elements and half-sites, and inhibits estrogen-induced gene expression.
The Journal of biological chemistry 1997;272(50):31465-74.
1997: Rumbaugh J A; Murante R S; Shi S; Bambara R A
Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing.
The Journal of biological chemistry 1997;272(36):22591-9.
1997: Kim J K; Palaniappan C; Wu W; Fay P J; Bambara R A
Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1.
The Journal of biological chemistry 1997;272(27):16769-77.
1997: Lu Y; Planelles V; Li X; Palaniappan C; Day B; Challita-Eid P; Amado R; Stephens D; Kohn D B; Bakker A; Fay P; Bambara R A; Rosenblatt J D
Inhibition of HIV-1 replication using a mutated tRNALys-3 primer.
The Journal of biological chemistry 1997;272(23):14523-31.
1997: Palaniappan C; Wisniewski M; Jacques P S; Le Grice S F; Fay P J; Bambara R A
Mutations within the primer grip region of HIV-1 reverse transcriptase result in loss of RNase H function.
The Journal of biological chemistry 1997;272(17):11157-64.
1997: Bambara R A; Murante R S; Henricksen L A
Enzymes and reactions at the eukaryotic DNA replication fork.
The Journal of biological chemistry 1997;272(8):4647-50.
1996: Anolik J H; Klinge C M; Brolly C L; Bambara R A; Hilf R
Stability of the ligand-estrogen receptor interaction depends on estrogen response element flanking sequences and cellular factors.
The Journal of steroid biochemistry and molecular biology 1996;59(5-6):413-29.
1996: DeMott M S; Shen B; Park M S; Bambara R A; Zigman S
Human RAD2 homolog 1 5'- to 3'-exo/endonuclease can efficiently excise a displaced DNA fragment containing a 5'-terminal abasic lesion by endonuclease activity.
The Journal of biological chemistry 1996;271(47):30068-76.
1996: Barnes C J; Wahl A F; Shen B; Park M S; Bambara R A
Mechanism of tracking and cleavage of adduct-damaged DNA substrates by the mammalian 5'- to 3'-exonuclease/endonuclease RAD2 homologue 1 or flap endonuclease 1.
The Journal of biological chemistry 1996;271(47):29624-31.
1996: Fuentes G M; Palaniappan C; Fay P J; Bambara R A
Strand displacement synthesis in the central polypurine tract region of HIV-1 promotes DNA to DNA strand transfer recombination.
The Journal of biological chemistry 1996;271(47):29605-11.
1996: Murante R S; Rumbaugh J A; Barnes C J; Norton J R; Bambara R A
Calf RTH-1 nuclease can remove the initiator RNAs of Okazaki fragments by endonuclease activity.
The Journal of biological chemistry 1996;271(42):25888-97.
1996: Palaniappan C; Wisniewski M; Wu W; Fay P J; Bambara R A
Misincorporation by HIV-1 reverse transcriptase promotes recombination via strand transfer synthesis.
The Journal of biological chemistry 1996;271(37):22331-8.
1996: Huang L; Rumbaugh J A; Murante R S; Lin R J; Rust L; Bambara R A
Role of calf RTH-1 nuclease in removal of 5'-ribonucleotides during Okazaki fragment processing.
Biochemistry 1996;35(28):9266-77.
1996: Fuentes G M; Fay P J; Bambara R A
Relationship between plus strand DNA synthesis removal of downstream segments of RNA by human immunodeficiency virus, murine leukemia virus and avian myeloblastoma virus reverse transcriptases.
Nucleic acids research 1996;24(9):1719-26.
1996: Wu W; Palaniappan C; Bambara R A; Fay P J
Differences in mutagenesis during minus strand, plus strand and strand transfer (recombination) synthesis of the HIV-1 gene in vitro.
Nucleic acids research 1996;24(9):1710-8.
1996: Driscoll M D; Klinge C M; Hilf R; Bambara R A
Footprint analysis of estrogen receptor binding to adjacent estrogen response elements.
The Journal of steroid biochemistry and molecular biology 1996;58(1):45-61.
1996: Klinge C M; Traish A M; Bambara R A; Hilf R
Dissociation of 4-hydroxytamoxifen, but not estradiol or tamoxifen aziridine, from the estrogen receptor as the receptor binds estrogen response element DNA.
The Journal of steroid biochemistry and molecular biology 1996;57(1-2):51-66.
1996: Palaniappan C; Fuentes G M; Rodríguez-Rodríguez L; Fay P J; Bambara R A
Helix structure and ends of RNA/DNA hybrids direct the cleavage specificity of HIV-1 reverse transcriptase RNase H.
The Journal of biological chemistry 1996;271(4):2063-70.
1996: Fuentes G M; Rodríguez-Rodríguez L; Palaniappan C; Fay P J; Bambara R A
Strand displacement synthesis of the long terminal repeats by HIV reverse transcriptase.
The Journal of biological chemistry 1996;271(4):1966-71.
1995: Murante R S; Rust L; Bambara R A
Calf 5' to 3' exo/endonuclease must slide from a 5' end of the substrate to perform structure-specific cleavage.
The Journal of biological chemistry 1995;270(51):30377-83.
1995: Fuentes G M; Rodríguez-Rodríguez L; Fay P J; Bambara R A
Use of an oligoribonucleotide containing the polypurine tract sequence as a primer by HIV reverse transcriptase.
The Journal of biological chemistry 1995;270(47):28169-76.
1995: Rodríguez-Rodríguez L; Tsuchihashi Z; Fuentes G M; Bambara R A; Fay P J
Influence of human immunodeficiency virus nucleocapsid protein on synthesis and strand transfer by the reverse transcriptase in vitro.
The Journal of biological chemistry 1995;270(25):15005-11.
1995: Palaniappan C; Fay P J; Bambara R A
Nevirapine alters the cleavage specificity of ribonuclease H of human immunodeficiency virus 1 reverse transcriptase.
The Journal of biological chemistry 1995;270(9):4861-9.
1995: Anolik J H; Klinge C M; Hilf R; Bambara R A
Cooperative binding of estrogen receptor to DNA depends on spacing of binding sites, flanking sequence, and ligand.
Biochemistry 1995;34(8):2511-20.
1995: Wu W; Blumberg B M; Fay P J; Bambara R A
Strand transfer mediated by human immunodeficiency virus reverse transcriptase in vitro is promoted by pausing and results in misincorporation.
The Journal of biological chemistry 1995;270(1):325-32.
1995: Bambara R A; Fay P J; Mallaber L M
Methods of analyzing processivity.
Methods in enzymology 1995;262():270-80.
1995: Bambara R A; Huang L
Reconstitution of mammalian DNA replication.
Progress in nucleic acid research and molecular biology 1995;51():93-122.
1994: Turchi J J; Huang L; Murante R S; Kim Y; Bambara R A
Enzymatic completion of mammalian lagging-strand DNA replication.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(21):9803-7.
1994: Huang L; Kim Y; Turchi J J; Bambara R A
Structure-specific cleavage of the RNA primer from Okazaki fragments by calf thymus RNase HI.
The Journal of biological chemistry 1994;269(41):25922-7.
1994: DeStefano J J; Wu W; Seehra J; McCoy J; Laston D; Albone E; Fay P J; Bambara R A
Characterization of an RNase H deficient mutant of human immunodeficiency virus-1 reverse transcriptase having an aspartate to asparagine change at position 498.
Biochimica et biophysica acta 1994;1219(2):380-8.
1994: DeStefano J J; Mallaber L M; Fay P J; Bambara R A
Quantitative analysis of RNA cleavage during RNA-directed DNA synthesis by human immunodeficiency and avian myeloblastosis virus reverse transcriptases.
Nucleic acids research 1994;22(18):3793-800.
1994: Murante R S; Huang L; Turchi J J; Bambara R A
The calf 5'- to 3'-exonuclease is also an endonuclease with both activities dependent on primers annealed upstream of the point of cleavage.
The Journal of biological chemistry 1994;269(2):1191-6.
1994: DeStefano J J; Bambara R A; Fay P J
The mechanism of human immunodeficiency virus reverse transcriptase-catalyzed strand transfer from internal regions of heteropolymeric RNA templates.
The Journal of biological chemistry 1994;269(1):161-8.
1993: Anolik J H; Klinge C M; Bambara R A; Hilf R
Differential impact of flanking sequences on estradiol- vs 4-hydroxytamoxifen-liganded estrogen receptor binding to estrogen responsive element DNA.
The Journal of steroid biochemistry and molecular biology 1993;46(6):713-30.
1993: Huang L; Turchi J J; Wahl A F; Bambara R A
Activity of calf thymus DNA helicase E on cis-diamminedichloroplatinum (II)-damaged DNA.
The Journal of biological chemistry 1993;268(35):26731-7.
1993: Buiser R G; Bambara R A; Fay P J
Pausing by retroviral DNA polymerases promotes strand transfer from internal regions of RNA donor templates to homopolymeric acceptor templates.
Biochimica et biophysica acta 1993;1216(1):20-30.
1993: DeStefano J J; Mallaber L M; Fay P J; Bambara R A
Determinants of the RNase H cleavage specificity of human immunodeficiency virus reverse transcriptase.
Nucleic acids research 1993;21(18):4330-8.
1993: Turchi J J; Bambara R A
Completion of mammalian lagging strand DNA replication using purified proteins.
The Journal of biological chemistry 1993;268(20):15136-41.
1993: DeStefano J J; Bambara R A; Fay P J
Parameters that influence the binding of human immunodeficiency virus reverse transcriptase to nucleic acid structures.
Biochemistry 1993;32(27):6908-15.
1993: Huang L; Turchi J J; Wahl A F; Bambara R A
Effects of the anticancer drug cis-diamminedichloroplatinum(II) on the activities of calf thymus DNA polymerase epsilon.
Biochemistry 1993;32(3):841-8.
1992: DeStefano J J; Mallaber L M; Rodriguez-Rodriguez L; Fay P J; Bambara R A
Requirements for strand transfer between internal regions of heteropolymer templates by human immunodeficiency virus reverse transcriptase.
Journal of virology 1992;66(11):6370-8.
1992: Turchi J J; Murante R S; Bambara R A
DNA substrate specificity of DNA helicase E from calf thymus.
Nucleic acids research 1992;20(22):6075-80.
1992: Klinge C M; Bambara R A; Hilf R
Antiestrogen-liganded estrogen receptor interaction with estrogen responsive element DNA in vitro.
The Journal of steroid biochemistry and molecular biology 1992;43(4):249-62.
1992: Siegal G; Turchi J J; Myers T W; Bambara R A
A 5' to 3' exonuclease functionally interacts with calf DNA polymerase epsilon.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(20):9377-81.
1992: Turchi J J; Siegal G; Bambara R A
DNA helicase E and DNA polymerase epsilon functionally interact for displacement synthesis.
Biochemistry 1992;31(37):9008-15.
1992: DeStefano J J; Buiser R G; Mallaber L M; Fay P J; Bambara R A
Parameters that influence processive synthesis and site-specific termination by human immunodeficiency virus reverse transcriptase on RNA and DNA templates.
Biochimica et biophysica acta 1992;1131(3):270-80.
1992: Siegal G; Turchi J J; Jessee C B; Myers T W; Bambara R A
A novel DNA helicase from calf thymus.
The Journal of biological chemistry 1992;267(19):13629-35.
1992: Klinge C M; Peale F V; Hilf R; Bambara R A; Zain S
Cooperative estrogen receptor interaction with consensus or variant estrogen responsive elements in vitro.
Cancer research 1992;52(5):1073-81.
1992: Siegal G; Turchi J J; Jessee C B; Mallaber L M; Bambara R A; Myers T W
Structural relationships between two forms of DNA polymerase epsilon from calf thymus.
The Journal of biological chemistry 1992;267(6):3991-9.
1991: Thomas D C; Roberts J D; Sabatino R D; Myers T W; Tan C K; Downey K M; So A G; Bambara R A; Kunkel T A
Fidelity of mammalian DNA replication and replicative DNA polymerases.
Biochemistry 1991;30(51):11751-9.
1991: DeStefano J J; Buiser R G; Mallaber L M; Bambara R A; Fay P J
Human immunodeficiency virus reverse transcriptase displays a partially processive 3' to 5' endonuclease activity.
The Journal of biological chemistry 1991;266(36):24295-301.
1991: Buiser R G; DeStefano J J; Mallaber L M; Fay P J; Bambara R A
Requirements for the catalysis of strand transfer synthesis by retroviral DNA polymerases.
The Journal of biological chemistry 1991;266(20):13103-9.
1991: DeStefano J J; Buiser R G; Mallaber L M; Myers T W; Bambara R A; Fay P J
Polymerization and RNase H activities of the reverse transcriptases from avian myeloblastosis, human immunodeficiency, and Moloney murine leukemia viruses are functionally uncoupled.
The Journal of biological chemistry 1991;266(12):7423-31.
1991: Bambara R A; Jessee C B
Properties of DNA polymerases delta and epsilon, and their roles in eukaryotic DNA replication.
Biochimica et biophysica acta 1991;1088(1):11-24.
1990: Sabatino R D; Myers T W; Bambara R A
Substrate specificity of the exonuclease associated with calf DNA polymerase.
Cancer research 1990;50(17):5340-4.
1990: Ludwig L B; Klinge C M; Peale F V; Bambara R A; Zain S; Hilf R
A microtiter well assay for quantitative measurement of estrogen receptor binding to estrogen-responsive elements.
Molecular endocrinology (Baltimore, Md.) 1990;4(7):1027-33.
1990: Klinge C M; Bambara R A; Zain S; Hilf R
Nuclease sensitivity of estradiol-charged estrogen receptor binding sites in nuclei isolated from normal and neoplastic rat mammary tissues.
Journal of steroid biochemistry 1990;36(1-2):7-14.
1990: Bodner J B; Bambara R A
Selective inhibition of DNA primase activity associated with DNA polymerase alpha from calf thymus.
Cancer biochemistry biophysics 1990;11(1):7-12.
1989: Cripps-Wolfman J; Henshaw E C; Bambara R A
Alterations in the phosphorylation and activity of DNA polymerase alpha correlate with the change in replicative DNA synthesis as quiescent cells re-enter the cell cycle.
The Journal of biological chemistry 1989;264(33):19478-86.
1989: Peale F V; Ishibe Y; Klinge C M; Zain S; Hilf R; Bambara R A
Rapid purification of the estrogen receptor by sequence-specific DNA affinity chromatography.
Biochemistry 1989;28(22):8671-5.
1989: Klinge C M; Knox D T; Bambara R A; Zain S; Hilf R
Antiestrogen(4-hydroxytamoxifen)-charged estrogen receptor binding to nuclei from normal and neoplastic rat mammary tissues is not affected by host hormonal status.
Journal of steroid biochemistry 1989;33(3):335-40.
1989: Liu Y C; Marraccino R L; Keng P C; Bambara R A; Lord E M; Chou W G; Zain S B
Requirement for proliferating cell nuclear antigen expression during stages of the Chinese hamster ovary cell cycle.
Biochemistry 1989;28(7):2967-74.
1989: Klinge C M; Bambara R A; Zain S; Hilf R
Effects of host hormonal status on binding of activated estrogen receptor to nuclei from R3230AC and 7,12-dimethylbenz[a]anthracene-induced mammary tumors.
Cancer research 1989;49(5):1165-70.
1988: Sabatino R D; Myers T W; Bambara R A; Kwon-Shin O; Marraccino R L; Frickey P H
Calf thymus DNA polymerases alpha and delta are capable of highly processive DNA synthesis.
Biochemistry 1988;27(8):2998-3004.
1988: Sabatino R D; Bambara R A
Properties of the 3' to 5' exonuclease associated with calf DNA polymerase delta.
Biochemistry 1988;27(7):2266-71.
1988: Peale F V; Ludwig L B; Zain S; Hilf R; Bambara R A
Properties of a high-affinity DNA binding site for estrogen receptor.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(4):1038-42.
1987: Marraccino R L; Wahl A F; Keng P C; Lord E M; Bambara R A
Cell cycle dependent activities of DNA polymerases alpha and delta in Chinese hamster ovary cells.
Biochemistry 1987;26(24):7864-70.
1987: Kunkel T A; Sabatino R D; Bambara R A
Exonucleolytic proofreading by calf thymus DNA polymerase delta.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(14):4865-9.
1986: Wahl A F; Crute J J; Sabatino R D; Bodner J B; Marraccino R L; Harwell L W; Lord E M; Bambara R A
Properties of two forms of DNA polymerase delta from calf thymus.
Biochemistry 1986;25(24):7821-7.
1986: Hockensmith J W; Wahl A F; Kowalski S; Bambara R A
Purification of a calf thymus DNA-dependent adenosinetriphosphatase that prefers a primer-template junction effector.
Biochemistry 1986;25(24):7812-21.
1986: Crute J J; Wahl A F; Bambara R A
Purification and characterization of two new high molecular weight forms of DNA polymerase delta.
Biochemistry 1986;25(1):26-36.
1986: Crute J J; Wahl A F; Bambara R A; Murant R S; Gibson S L; Hilf R
Inhibition of mammalian DNA polymerases by hematoporphyrin derivative and photoradiation.
Cancer research 1986;46(1):153-9.
1985: Peale F V; Bond J; Hilf R; Bambara R
An analysis of the decrease in the assayed level of charged bovine estrogen receptor observed at physiological ionic strength.
Journal of steroid biochemistry 1985;22(2):161-7.
1985: Bambara R A; Crute J J; Wahl A F
Is Ap4A an activator of eukaryotic DNA replication?
Cancer investigation 1985;3(5):473-9.
1984: Wahl A F; Kowalski S P; Harwell L W; Lord E M; Bambara R A
Immunoaffinity purification and properties of a high molecular weight calf thymus DNA alpha-polymerase.
Biochemistry 1984;23(9):1895-9.
1983: Wahl A F; Hockensmith J W; Kowalski S; Bambara R A
Alternative explanation for excision repair deficiency caused by the polAex1 mutation.
Journal of bacteriology 1983;155(2):922-5.

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