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Sidney Kushner
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12
Mohanty, Bijoy
5
Maples, Valerie
4
Ow, Maria
3
Wang, Rongfu
3
Arraiano, Cecília
3
Vicente, Miguel
2
Babitzke, Paul
2
Baugh, Ryan
1
Cao, Gong-Jie
1
Höög, Jan-Olov
1
Ivarie, Robert
1
Jakob, Ursula
1
Kinghorn, James
1
Romeo, Tony
1
Rudd, Kenneth
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All Publications
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2008: Perwez Tariq; Hami Danyal; Maples Valerie F; Min Zhao; Wang Bi-Cheng; Kushner Sidney R
Intragenic suppressors of temperature-sensitive rne mutations lead to the dissociation of RNase E activity on mRNA and tRNA substrates in Escherichia coli.
Nucleic acids research 2008;36(16):5306-18.
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2008: Mohanty Bijoy K; Kushner Sidney R
Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli.
Nucleic acids research 2008;36(2):364-75.
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2008: Mohanty Bijoy K; Giladi Hili; Maples Valerie F; Kushner Sidney R
Analysis of RNA decay, processing, and polyadenylation in Escherichia coli and other prokaryotes.
Methods in enzymology 2008;447():3-29.
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2007: Mohanty Bijoy K; Kushner Sidney R
Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E.
Nucleic acids research 2007;35(22):7614-25.
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2006: Suzuki Kazushi; Babitzke Paul; Kushner Sidney R; Romeo Tony
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.
Genes & development 2006;20(18):2605-17.
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2006: Perwez Tariq; Kushner Sidney R
RNase Z in Escherichia coli plays a significant role in mRNA decay.
Molecular microbiology 2006;60(3):723-37.
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2006: Mohanty Bijoy K; Kushner Sidney R
The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells.
Nucleic acids research 2006;34(19):5695-704.
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2004: Mohanty Bijoy K; Maples Valerie F; Kushner Sidney R
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.
Molecular microbiology 2004;54(4):905-20.
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2004: Kushner Sidney R
mRNA decay in prokaryotes and eukaryotes: different approaches to a similar problem.
IUBMB life 2004;56(10):585-94.
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2003: Mohanty Bijoy K; Kushner Sidney R
Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay.
Molecular microbiology 2003;50(2):645-58.
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2003: Ow Maria C; Perwez Tariq; Kushner Sidney R
RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E.
Molecular microbiology 2003;49(3):607-22.
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2002: Mohanty Bijoy K; Kushner Sidney R
Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E.
Molecular microbiology 2002;45(5):1315-24.
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2002: Kushner Sidney R
mRNA decay in Escherichia coli comes of age.
Journal of bacteriology 2002;184(17):4658-65; discussion 4657.
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2002: Ow Maria C; Kushner Sidney R
Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli.
Genes & development 2002;16(9):1102-15.
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2002: Ow Maria C; Liu Qi; Mohanty Bijoy K; Andrew Margaret E; Maples Valerie F; Kushner Sidney R
RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters.
Molecular microbiology 2002;43(1):159-71.
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2000: Ow M C; Liu Q; Kushner S R
Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly.
Molecular microbiology 2000;38(4):854-66.
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2000: Mohanty B K; Kushner S R
Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(22):11966-71.
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2000: Bügl H; Fauman E B; Staker B L; Zheng F; Kushner S R; Saper M A; Bardwell J C; Jakob U
RNA methylation under heat shock control.
Molecular cell 2000;6(2):349-60.
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2000: Mohanty B K; Kushner S R
Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli.
Molecular microbiology 2000;36(4):982-94.
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1999: Mohanty B K; Kushner S R
Residual polyadenylation in poly(A) polymerase I (pcnB ) mutants of Escherichia coli does not result from the activity encoded by the f310 gene.
Molecular microbiology 1999;34(5):1109-19.
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1999: Mohanty B K; Kushner S R
Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism.
Molecular microbiology 1999;34(5):1094-108.
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1998: Wang R F; O'Hara E B; Aldea M; Bargmann C I; Gromley H; Kushner S R
Escherichia coli mrsC is an allele of hflB, encoding a membrane-associated ATPase and protease that is required for mRNA decay.
Journal of bacteriology 1998;180(7):1929-38.
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1998: Granger L L; O'Hara E B; Wang R F; Meffen F V; Armstrong K; Yancey S D; Babitzke P; Kushner S R
The Escherichia coli mrsC gene is required for cell growth and mRNA decay.
Journal of bacteriology 1998;180(7):1920-8.
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1998: Zhang G; Deng E; Baugh L; Kushner S R
Identification and characterization of Escherichia coli DNA helicase II mutants that exhibit increased unwinding efficiency.
Journal of bacteriology 1998;180(2):377-87.
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1997: Zhang G; Deng E; Baugh L R; Hamilton C M; Maples V F; Kushner S R
Conserved motifs II to VI of DNA helicase II from Escherichia coli are all required for biological activity.
Journal of bacteriology 1997;179(23):7544-50.
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1997: Arraiano C M; Cruz A A; Kushner S R
Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: evidence for multiple degradation pathways.
Journal of molecular biology 1997;268(2):261-72.
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1996: Ingle C A; Kushner S R
Development of an in vitro mRNA decay system for Escherichia coli: poly(A) polymerase I is necessary to trigger degradation.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(23):12926-31.
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1995: Gan K; Sankaran K; Williams M G; Aldea M; Rudd K E; Kushner S R; Wu H C
The umpA gene of Escherichia coli encodes phosphatidylglycerol:prolipoprotein diacylglyceryl transferase (lgt) and regulates thymidylate synthase levels through translational coupling.
Journal of bacteriology 1995;177(7):1879-82.
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1995: O'Hara E B; Chekanova J A; Ingle C A; Kushner Z R; Peters E; Kushner S R
Polyadenylylation helps regulate mRNA decay in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(6):1807-11.
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1995: Moskovitz J; Rahman M A; Strassman J; Yancey S O; Kushner S R; Brot N; Weissbach H
Escherichia coli peptide methionine sulfoxide reductase gene: regulation of expression and role in protecting against oxidative damage.
Journal of bacteriology 1995;177(3):502-7.
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1994: Kalapos M P; Cao G J; Kushner S R; Sarkar N
Identification of a second poly(A) polymerase in Escherichia coli.
Biochemical and biophysical research communications 1994;198(2):459-65.
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1993: Arraiano C; Yancey S D; Kushner S R
Identification of endonucleolytic cleavage sites involved in decay of Escherichia coli trxA mRNA.
Journal of bacteriology 1993;175(4):1043-52.
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1993: Washburn B K; Kushner S R
Characterization of DNA helicase II from a uvrD252 mutant of Escherichia coli.
Journal of bacteriology 1993;175(2):341-50.
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1993: Babitzke P; Granger L; Olszewski J; Kushner S R
Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III.
Journal of bacteriology 1993;175(1):229-39.
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1992: Henry M D; Yancey S D; Kushner S R
Role of the heat shock response in stability of mRNA in Escherichia coli K-12.
Journal of bacteriology 1992;174(3):743-8.
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1991: Díaz-Torres M R; Dykstra C C; Claverie-Martín F; Kushner S R
Extracellular release of protease III (ptr) by Escherichia coli K12.
Canadian journal of microbiology 1991;37(9):718-21.
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1991: Vicente M; Kushner S R; Garrido T; Aldea M
The role of the 'gearbox' in the transcription of essential genes.
Molecular microbiology 1991;5(9):2085-91.
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1991: Wang R F; Kushner S R
Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli.
Gene 1991;100():195-9.
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1991: Washburn B K; Kushner S R
Construction and analysis of deletions in the structural gene (uvrD) for DNA helicase II of Escherichia coli.
Journal of bacteriology 1991;173(8):2569-75.
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1991: Claverie-Martin F; Diaz-Torres M R; Yancey S D; Kushner S R
Analysis of the altered mRNA stability (ams) gene from Escherichia coli. Nucleotide sequence, transcriptional analysis, and homology of its product to MRP3, a mitochondrial ribosomal protein from Neurospora crassa.
The Journal of biological chemistry 1991;266(5):2843-51.
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1991: Babitzke P; Kushner S R
The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(1):1-5.
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1990: Yancey S D; Kushner S R
Isolation and characterization of a new temperature-sensitive polynucleotide phosphorylase mutation in Escherichia coli K-12.
Biochimie 1990;72(11):835-43.
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1990: Palas K M; Kushner S R
Biochemical and physical characterization of exonuclease V from Escherichia coli. Comparison of the catalytic activities of the RecBC and RecBCD enzymes.
The Journal of biological chemistry 1990;265(6):3447-54.
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1989: Aldea M; Garrido T; Hernández-Chico C; Vicente M; Kushner S R
Induction of a growth-phase-dependent promoter triggers transcription of bolA, an Escherichia coli morphogene.
The EMBO journal 1989;8(12):3923-31.
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1989: Claverie-Martin F; Diaz-Torres M R; Yancey S D; Kushner S R
Cloning of the altered mRNA stability (ams) gene of Escherichia coli K-12.
Journal of bacteriology 1989;171(10):5479-86.
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1989: Hamilton C M; Aldea M; Washburn B K; Babitzke P; Kushner S R
New method for generating deletions and gene replacements in Escherichia coli.
Journal of bacteriology 1989;171(9):4617-22.
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1989: Williams M G; Fortson M; Dykstra C C; Jensen P; Kushner S R
Identification and genetic mapping of the structural gene for an essential Escherichia coli membrane protein.
Journal of bacteriology 1989;171(1):565-8.
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1988: Aldea M; Hernández-Chico C; de la Campa A G; Kushner S R; Vicente M
Identification, cloning, and expression of bolA, an ftsZ-dependent morphogene of Escherichia coli.
Journal of bacteriology 1988;170(11):5169-76.
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1988: Arraiano C M; Yancey S D; Kushner S R
Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12.
Journal of bacteriology 1988;170(10):4625-33.
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1988: Aldea M; Kushner S R
Instructions for the CLONING program.
Gene 1988;65(1):117-22.
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1988: Aldea M; Claverie-Martín F; Díaz-Torres M R; Kushner S R
Transcript mapping using [35S]DNA probes, trichloroacetate solvent and dideoxy sequencing ladders: a rapid method for identification of transcriptional start points.
Gene 1988;65(1):101-10.
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1988: Aldea M; Kushner S R
CLONING: a microcomputer program for cloning simulations.
Gene 1988;65(1):111-6.
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1988: Phillips G J; Prasher D C; Kushner S R
Physical and biochemical characterization of cloned sbcB and xonA mutations from Escherichia coli K-12.
Journal of bacteriology 1988;170(5):2089-94.
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1988: Aldea M; Maples V F; Kushner S R
Generation of a detailed physical and genetic map of the ilv-metE-udp region of the Escherichia coli chromosome.
Journal of molecular biology 1988;200(3):427-38.
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1987: Phillips G J; Kushner S R
Determination of the nucleotide sequence for the exonuclease I structural gene (sbcB) of Escherichia coli K12.
The Journal of biological chemistry 1987;262(1):455-9.
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1987: Claverie-Martin F; Diaz-Torres M R; Kushner S R
Analysis of the regulatory region of the protease III (ptr) gene of Escherichia coli K-12.
Gene 1987;54(2-3):185-95.
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1986: Morris J; Kushner S R; Ivarie R
The simple repeat poly(dT-dG).poly(dC-dA) common to eukaryotes is absent from eubacteria and archaebacteria and rare in protozoans.
Molecular biology and evolution 1986;3(4):343-55.
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1986: Donovan W P; Kushner S R
Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(1):120-4.
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1985: Bassett C L; Kushner S R
Spontaneous induction of colicin E1 in Escherichia coli strains deficient in both exonucleases I and V.
Journal of bacteriology 1985;164(3):1362-5.
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1985: Dykstra C C; Kushner S R
Physical characterization of the cloned protease III gene from Escherichia coli K-12.
Journal of bacteriology 1985;163(3):1055-9.
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1985: Caron P R; Kushner S R; Grossman L
Involvement of helicase II (uvrD gene product) and DNA polymerase I in excision mediated by the uvrABC protein complex.
Proceedings of the National Academy of Sciences of the United States of America 1985;82(15):4925-9.
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1984: Wallace B J; Kushner S R
Genetic and physical analysis of the thioredoxin (trxA) gene of Escherichia coli K-12.
Gene 1984;32(3):399-408.
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1984: Höög J O; von Bahr-Lindström H; Josephson S; Wallace B J; Kushner S R; Jörnvall H; Holmgren A
Nucleotide sequence of the thioredoxin gene from Escherichia coli.
Bioscience reports 1984;4(11):917-23.
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1984: Lunn C A; Kathju S; Wallace B J; Kushner S R; Pigiet V
Amplification and purification of plasmid-encoded thioredoxin from Escherichia coli K12.
The Journal of biological chemistry 1984;259(16):10469-74.
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1984: Bassett C L; Kushner S R
Exonucleases I, III, and V are required for stability of ColE1-related plasmids in Escherichia coli.
Journal of bacteriology 1984;157(2):661-4.
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1984: Dykstra C C; Prasher D; Kushner S R
Physical and biochemical analysis of the cloned recB and recC genes of Escherichia coli K-12.
Journal of bacteriology 1984;157(1):21-7.
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1984: Dykstra C C; Palas K M; Kushner S R
Purification and characterization of exonuclease V from Escherichia coli K-12.
Cold Spring Harbor symposia on quantitative biology 1984;49():463-7.
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1983: Easton A M; Kushner S R
Transcription of the uvrD gene of Escherichia coli is controlled by the lexA repressor and by attenuation.
Nucleic acids research 1983;11(24):8625-40.
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1983: Donovan W P; Kushner S R
Purification and characterization of orotidine-5'-phosphate decarboxylase from Escherichia coli K-12.
Journal of bacteriology 1983;156(2):620-4.
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1983: Donovan W P; Kushner S R
Cloning and physical analysis of the pyrF gene (coding for orotidine-5'-phosphate decarboxylase) from Escherichia coli K-12.
Gene 1983;25(1):39-48.
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1983: Prasher D C; Conarro L; Kushner S R
Amplification and purification of exonuclease I from Escherichia coli K12.
The Journal of biological chemistry 1983;258(10):6340-3.
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1983: Prasher D; Kasunic D A; Kushner S R
Physical and genetic characterization of the cloned sbcB (exonuclease I) region of the Escherichia coli genome.
Journal of bacteriology 1983;153(2):903-8.
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1983: Donovan W P; Kushner S R
Amplification of ribonuclease II (rnb) activity in Escherichia coli K-12.
Nucleic acids research 1983;11(2):265-75.
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1982: Maples V F; Kushner S R
DNA repair in Escherichia coli: identification of the uvrD gene product.
Proceedings of the National Academy of Sciences of the United States of America 1982;79(18):5616-20.
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1981: Patel V B; Schweizer M; Dykstra C C; Kushner S R; Giles N H
Genetic organization and transcriptional regulation in the qa gene cluster of Neurospora crassa.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(9):5783-7.
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1981: Schweizer M; Case M E; Dykstra C C; Giles N H; Kushner S R
Identification and characterization of recombinant plasmids carrying the complete qa gene cluster from Neurospora crassa including the qa-1+ regulatory gene.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(8):5086-90.
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1981: Kinghorn J R; Schweizer M; Giles N H; Kushner S R
The cloning and analysis of the aroD gene of E. coli K-12.
Gene 1981;14(1-2):73-80.
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1981: Schweizer M; Case M E; Dykstra C C; Giles N H; Kushner S R
Cloning the quinic acid (aq) gene cluster from Neurospora crassa: identification of recombinant plasmids containing both qa-2+ and qa-3+.
Gene 1981;14(1-2):23-32.
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1980: Yoakum G H; Kushner S R; Grossman L
Isolation of plasmids carrying either the uvrC or uvrC uvrA and ssb genes of Escherichia coli K-12.
Gene 1980;12(3-4):243-8.
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1980: Kasunic D A; Kushner S R
Expression of the HIS3 gene of Saccharomyces cerevisiae in polynucleotide phosphorylase-deficient strains of Escherichia coli K-12.
Gene 1980;12(1-2):1-10.
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1979: Hautala J A; Bassett C L; Giles N H; Kushner S R
Increased expression of a eukaryotic gene in Escherichia coli through stabilization of its messenger RNA.
Proceedings of the National Academy of Sciences of the United States of America 1979;76(11):5774-8.
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1979: Case M E; Schweizer M; Kushner S R; Giles N H
Efficient transformation of Neurospora crassa by utilizing hybrid plasmid DNA.
Proceedings of the National Academy of Sciences of the United States of America 1979;76(10):5259-63.
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1979: Hautala J A; Schweizer M; Giles N H; Kushner S R
Constitutive expression in Escherichia coli of the Neurospora crassa structural gene encoding the inducible enzyme catabolic dehydroquinase.
Molecular & general genetics : MGG 1979;172(1):93-8.
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1978: Alton N K; Hautala J A; Giles N H; Kushner S R; Vapnek D
Transcription and translation in E. coli of hybrid plasmids containing the catabolic dehydroquinase gene from Neurospora crassa.
Gene 1978;4(3):241-59.
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1978: Zieg J; Maples V F; Kushner S R
Recombinant levels of Escherichia coli K-12 mutants deficient in various replication, recombination, or repair genes.
Journal of bacteriology 1978;134(3):958-66.
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1977: Vapnek D; Hautala J A; Jacobson J W; Giles N H; Kushner S R
Expression in Escherichia coli K-12 of the structural gene for catabolic dehydroquinase of Neurospora crassa.
Proceedings of the National Academy of Sciences of the United States of America 1977;74(8):3508-12.
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1977: Zieg J; Kushner S R
Analysis of genetic recombination between two partially deleted lactose operons of Escherichia coli K-12.
Journal of bacteriology 1977;131(1):123-32.
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1977: Kushner S R; Hautala J A; Jacobson J W; Giles N H; Vapnek D
Expression of the structural gene for catabolic dehydroquinase of Neurospora crassa in Escherichia coli K12.
Brookhaven symposia in biology 1977;(29):297-308.
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1977: Kushner S R; Maples V F; Champney W S
Conditionally lethal ribosomal protein mutants: characterization of a locus required for modification of 50S subunit proteins.
Proceedings of the National Academy of Sciences of the United States of America 1977;74(2):467-71.
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1977: Seals A A; Champney W S; Kushner S R
Transcription of ribosomal protein genes carried on F' plasmids of Escherichia coli.
Molecular & general genetics : MGG 1977;150(2):183-91.
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1976: Vapnek D; Alton N K; Bassett C L; Kushner S R
Amplification in Escherichia coli of enzymes involved in genetic recombination: construction of hybrid ColE1 plasmids carrying the structural gene for exonuclease I.
Proceedings of the National Academy of Sciences of the United States of America 1976;73(10):3492-6.
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1976: Champney W S; Kushner S R
A proposal for a uniform nomenclature for the genetics of bacterial protein synthesis.
Molecular & general genetics : MGG 1976;147(2):145-51.
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1975: Kushner S R
Analysis of temperature-sensitive recB and recC mutations.
Basic life sciences 1975;5A():301-6.
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1974: Kushner S R
Differential thermolability of exonuclease and endonuclease activities of the recBC nuclease isolated from thermosensitive recB and recC mutants.
Journal of bacteriology 1974;120(3):1219-22.
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1974: Kushner S R
In vivo studies of temperature-sensitive recB and recC mutants.
Journal of bacteriology 1974;120(3):1213-8.
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1974: Kushner S R; Nagaishi H; Clark A J
Isolation of exonuclease VIII: the enzyme associated with sbcA indirect suppressor.
Proceedings of the National Academy of Sciences of the United States of America 1974;71(9):3593-7.
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1972: Templin A; Kushner S R; Clark A J
Genetic analysis of mutations indirectly suppressing recB and recC mutations.
Genetics 1972;72(2):105-15.
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1972: Kushner S R; Nagaishi H; Clark A J
Indirect suppression of recB and recC mutations by exonuclease I deficiency.
Proceedings of the National Academy of Sciences of the United States of America 1972;69(6):1366-70.
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1971: Mahler I; Kushner S R; Grossman L
In vivo role of the UV-endonuclease from Micrococcus luteus in the repair of DNA.
Nature: New biology 1971;234(45):47-50.
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1971: Kaplan J C; Kushner S R; Grossman L
Enzymatic repair of DNA. 3. Properties of the UV-endonuclease and UV-exonuclease.
Biochemistry 1971;10(18):3315-24.
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1971: Kushner S R; Kaplan J C; Ono H; Grossman L
Enzymatic repair of deoxyribonucleic acid. IV. Mechanism of photoproduct excision.
Biochemistry 1971;10(18):3325-34.
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1971: Kushner S R; Nagaishi H; Templin A; Clark A J
Genetic recombination in Escherichia coli: the role of exonuclease I.
Proceedings of the National Academy of Sciences of the United States of America 1971;68(4):824-7.
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1969: Kaplan J C; Kushner S R; Grossman L
Enzymatic repair of DNA, 1. Purification of two enzymes involved in the excision of thymine dimers from ultraviolet-irradiated DNA.
Proceedings of the National Academy of Sciences of the United States of America 1969;63(1):144-51.
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1968: Grossman L; Kaplan J C; Kushner S R; Mahler I
Enzymes involved in the early stages of repair of ultraviolet-irradiated DNA.
Cold Spring Harbor symposia on quantitative biology 1968;33():229-34.
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