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Hugo Lam

Research Profile

Genes & Molecular Sequences

Occupations

Procedures

Sequence Analysis, DNA

Activities & Behaviors

Concepts & Ideas

Chemicals & Drugs

Physiology

Gene Duplication

Phenomena

Evolution, Molecular

Co-author Network

Publications

TOP 3
Hugo Y K Lam; Maeve O'Huallachain; Cuiping Pan; Carlos D Bustamante; Rui Chen; Michael J Clark; Mark B Gerstein; Rajini Haraksingh; Jeffrey M Kidd; Phil Lacroute; Michael Snyder
Detecting and annotating genetic variations using the HugeSeq pipeline.
Michael J Clark; Ghia Euskirchen; Konrad Karczewski; Hugo Y K Lam; Atul Butte; Rong Chen; Rui Chen; Michael Snyder
Performance comparison of exome DNA sequencing technologies.
Xinmeng Jasmine Mu; Yong Kong; Hugo Y K Lam; Zhi John Lu; Mark B Gerstein
Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.

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All Publications

2012: Hugo Y K Lam; Maeve O'Huallachain; Cuiping Pan; Carlos D Bustamante; Rui Chen; Michael J Clark; Mark B Gerstein; Rajini Haraksingh; Jeffrey M Kidd; Phil Lacroute; Michael Snyder
Detecting and annotating genetic variations using the HugeSeq pipeline.
Nature biotechnology 2012;30(3):226-9.
2011: Michael J Clark; Ghia Euskirchen; Konrad Karczewski; Hugo Y K Lam; Atul Butte; Rong Chen; Rui Chen; Michael Snyder
Performance comparison of exome DNA sequencing technologies.
Nature biotechnology 2011;29(10):908-14.
2011: Xinmeng Jasmine Mu; Yong Kong; Hugo Y K Lam; Zhi John Lu; Mark B Gerstein
Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.
Nucleic acids research 2011;39(16):7058-76.
2011: Chip Stewart; Michael P Strömberg; Adrian M Stütz; Alexander E Urban; Jerilyn A Walker; Jinchuan Xing; Mark A Batzer; Michele Busby; Erik Garrison; Fabian Grubert; Chad Huff; Amit R Indap; Lynn B Jorde; Miriam K Konkel; Jan O Korbel; Deniz Kural; Hugo Y K Lam; Wan-Ping Lee; Gabor T Marth; Michael P Snyder
A comprehensive map of mobile element insertion polymorphisms in humans.
PLoS genetics 2011;7(8):e1002236.
2011: Chong Shou; Nitin Bhardwaj; Hugo Y K Lam; Koon-Kiu Yan; Philip M Kim; Michael Snyder; Mark B Gerstein
Measuring the evolutionary rewiring of biological networks.
PLoS computational biology 2011;7(1):e1001050.
2010: Ekta Khurana; Hugo Y K Lam; Chao Cheng; Nicholas Carriero; Philip Cayting; Mark B Gerstein
Segmental duplications in the human genome reveal details of pseudogene formation.
Nucleic acids research 2010;38(20):6997-7007.
2010: Mei Zhong; Wei Niu; Zhi John Lu; Mihail Sarov; John I Murray; Judith Janette; Debasish Raha; Karyn L Sheaffer; Hugo Y K Lam; Elicia Preston; Cindie Slightham; LaDeana W Hillier; Trisha Brock; Ashish Agarwal; Raymond Auerbach; Anthony A Hyman; Mark Gerstein; Susan E Mango; Stuart K Kim; Robert H Waterston; Valerie Reinke; Michael Snyder
Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response.
PLoS genetics 2010;6(2):e1000848.
2010: Hugo Y K Lam; Philip M Kim; Janine Mok; Raffi Tonikian; Sachdev S Sidhu; Benjamin E Turk; Michael Snyder; Mark B Gerstein
MOTIPS: automated motif analysis for predicting targets of modular protein domains.
BMC bioinformatics 2010;11():243.
2010: Janine Mok; Philip M Kim; Hugo Y K Lam; Stacy Piccirillo; Xiuqiong Zhou; Grace R Jeschke; Douglas L Sheridan; Sirlester A Parker; Ved Desai; Miri Jwa; Elisabetta Cameroni; Hengyao Niu; Matthew Good; Attila Remenyi; Jia-Lin Nianhan Ma; YJ Sheu; Holly E Sassi; Richelle Sopko; Clarence S M Chan; Claudio de Virgilio; Nancy M Hollingsworth; Wendell A Lim; David F Stern; Bruce Stillman; Brenda J Andrews; Mark B Gerstein; Michael Snyder; Benjamin E Turk
Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs.
Science signaling 2010;3(109):ra12.
2010: Hugo Y K Lam; Xinmeng Jasmine Mu; Adrian M Stütz; Andrea Tanzer; Philip D Cayting; Michael Snyder; Philip M Kim; Jan O Korbel; Mark B Gerstein
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
Nature biotechnology 2010;28(1):47-55.
2008: Philip M Kim; Hugo Y K Lam; Alexander Eckehart Urban; Jan O Korbel; Jason Affourtit; Fabian Grubert; Xueying Chen; Sherman Weissman; Michael Snyder; Mark Gerstein
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history.
Genome research 2008;18(12):1865-74.
2007: Chiquito J Crasto; Luis Marenco; Nian Liu; Thomas M Morse; Kei-Hoi Cheung; Peter C Lai; Gautam Bahl; Peter Masiar; Hugo Y K Lam; Ernest Lim; Huajin Chen; Prakash M Nadkarni; Michele Migliore; Perry L Miller; Gordon M Shepherd
SenseLab: new developments in disseminating neuroscience information.
Briefings in bioinformatics 2007;8(3):150-62.
2007: Zhengdong D Zhang; Joel S Rozowsky; Hugo Y K Lam; Du Jiang; Michael Snyder; Mark Gerstein
Tilescope: online analysis pipeline for high-density tiling microarray data.
Genome biology 2007;8(5):R81.
2007: Hugo Y K Lam; Luis Marenco; Timothy Clark; Yong Gao; June Kinoshita; Gordon Shepherd; Perry Miller; Elizabeth Wu; Gwendolyn Wong; Nian Liu; Chiquito J Crasto; Thomas M Morse; Susie Stephens; Kei-Hoi Cheung
AlzPharm: integration of neurodegeneration data using RDF.
BMC bioinformatics 2007;8 Suppl 3():S4.
2006: Hugo Y K Lam; Luis Marenco; Gordon M Shepherd; Perry L Miller; Kei-Hoi Cheung
Using web ontology language to integrate heterogeneous databases in the neurosciences.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():464-8.