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Jillian Banfield

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Sequence Analysis, DNA

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TOP 3
Kim M Handley; Robert L Hettich; Philip E Long; Christopher S Miller; Manesh B Shah; Itai Sharon; Carl I Steefel; Brian C Thomas; Nathan C VerBerkmoes; Kenneth H Williams; Karuna Chourey; Kyle R Frischkorn; Jillian F Banfield
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.
Gerald Schönknecht; Roshan P Shrestha; Mario Stanke; Chad M Ternes; Curtis G Wilkerson; Brett J Baker; Jillian F Banfield; GUILLAUME BARBIER; Andrea Bräutigam; Kevin Carr; Wei-Hua Chen; Nicholas E Dickenson; David Gagneul; R Michael Garavito; Martin J Lercher; Christine Oesterhelt; Stefan A Rensing; Andreas P M Weber
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.
Christine L Sun; Brian C Thomas; Rodolphe Barrangou; Christophe Fremaux; Philippe Horvath; Jillian F Banfield
Phage mutations in response to CRISPR diversification in a bacterial population.

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All Publications

2013: Kim M Handley; Robert L Hettich; Philip E Long; Christopher S Miller; Manesh B Shah; Itai Sharon; Carl I Steefel; Brian C Thomas; Nathan C VerBerkmoes; Kenneth H Williams; Karuna Chourey; Kyle R Frischkorn; Jillian F Banfield
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.
The ISME journal 2013;7(4):800-16.
2013: Gerald Schönknecht; Roshan P Shrestha; Mario Stanke; Chad M Ternes; Curtis G Wilkerson; Brett J Baker; Jillian F Banfield; GUILLAUME BARBIER; Andrea Bräutigam; Kevin Carr; Wei-Hua Chen; Nicholas E Dickenson; David Gagneul; R Michael Garavito; Martin J Lercher; Christine Oesterhelt; Stefan A Rensing; Andreas P M Weber
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.
Science (New York, N.Y.) 2013;339(6124):1207-10.
2013: Christine L Sun; Brian C Thomas; Rodolphe Barrangou; Christophe Fremaux; Philippe Horvath; Jillian F Banfield
Phage mutations in response to CRISPR diversification in a bacterial population.
Environmental microbiology 2013;15(2):463-70.
2013: Birgit Luef; Michael J Wilkins; Kenneth H Williams; Kelly C Wrighton; Luis R Comolli; Roseann Csencsits; Kenneth H Downing; Sirine C Fakra; Philip E Long; Jillian F Banfield
Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.
The ISME journal 2013;7(2):338-50.
2013: Sheila Podell; Juan A Ugalde; Jillian F Banfield; Karla B Heidelberg; Priya Narasingarao; Eric E Allen
Assembly-driven community genomics of a hypersaline microbial ecosystem.
PloS one 2013;8(4):e61692.
2013: John W Moreau; John H Fournelle; Jillian F Banfield
Quantifying heavy metals sequestration by sulfate-reducing bacteria in an Acid mine drainage-contaminated natural wetland.
Frontiers in microbiology 2013;4():43.
2013: Annika C Mosier; Trent R Northen; Brian C Thomas; Richard Baran; Benjamin P Bowen; Nicholas B Justice; Jillian F Banfield
Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics.
mBio 2013;4(2):e00484-12.
2013: Michael J Wilkins; Kenneth H Williams; Kelly C Wrighton; Jillian F Banfield; Ludovic Giloteaux; Kim M Handley; Philip E Long; Derek R Lovley; Lee Ann McCue; Chris S Miller; Alison P Montgomery; Carrie D Nicora; Mary S Lipton
Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.
PloS one 2013;8(3):e57819.
2013: Christopher S Miller; Brian C Thomas; Kelly C Wrighton; Kyle R Frischkorn; Kim M Handley; Jillian F Banfield
Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.
PloS one 2013;8(2):e56018.
2013: David Paez-Espino; Buffy Stahl; Christine L Sun; Brian C Thomas; Ken-ichi Ueda; Rodolphe Barrangou; Wesley Morovic; Jillian F Banfield
Strong bias in the bacterial CRISPR elements that confer immunity to phage.
Nature communications 2013;4():1430.
2013: Itai Sharon; Brian C Thomas; Elizabeth K Costello; Michael J Morowitz; David A Relman; Jillian F Banfield
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.
Genome research 2013;23(1):111-20.
2012: Nicholas B Justice; Christopher S Miller; Ryan Mueller; Chongle Pan; Manesh Shah; Vega Shah; Susan E Spaulding; Christine L Sun; Brian C Thomas; Nathan C VerBerkmoes; Alexis P Yelton; Robert L Hettich; Jillian F Banfield
Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities.
Applied and environmental microbiology 2012;78(23):8321-30.
2012: Akira Hirata; Jillian F Banfield; Kosuke Fujishima; Akio Kanai; Takuya Kawamura; Ryota Yamagami; Hiroyuki Hori
X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.
Nucleic acids research 2012;40(20):10554-66.
2012: Karelyn Cruz-Martínez; Anna Rosling; Mingzhou Song; Yang Zhang; Gary L Andersen; Jillian F Banfield
Effect of rainfall-induced soil geochemistry dynamics on grassland soil microbial communities.
Applied and environmental microbiology 2012;78(21):7587-95.
2012: Kelly C Wrighton; Cindy J Castelle; Robert L Hettich; Mary S Lipton; Philip E Long; Christopher S Miller; Itai Sharon; Brian C Thomas; Nathan C VerBerkmoes; Michael J Wilkins; Kenneth H Williams; Jillian F Banfield
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.
Science (New York, N.Y.) 2012;337(6102):1661-5.
2012: Joanne B Emerson; Karla B Heidelberg; Brian C Thomas; Eric E Allen; Karen Andrade; Jillian F Banfield
Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly.
Applied and environmental microbiology 2012;78(17):6309-20.
2012: Mengqiang Zhu; Hengzhong Zhang; Jillian F Banfield; Benjamin Gilbert; Benjamin Legg; Yang Ren; Glenn A Waychunas
Early stage formation of iron oxyhydroxides during neutralization of simulated acid mine drainage solutions.
Environmental science & technology 2012;46(15):8140-7.
2012: Kim M Handley; Philip E Long; A Lucie N'Guessan; Aaron Peacock; Yvette M Piceno; Michael J Wilkins; Kenneth H Williams; Kelly C Wrighton; Gary L Andersen; John Bargar; Todd Z DeSantis; Jillian F Banfield
High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment.
FEMS microbiology ecology 2012;81(1):188-204.
2012: Luis R Comolli; Roseann Csencsits; Kenneth H Downing; Robert Duarte; David M Larson; Birgit Luef; Dennis Baum; Jillian F Banfield
A portable cryo-plunger for on-site intact cryogenic microscopy sample preparation in natural environments.
Microscopy research and technique 2012;75(6):829-36.
2012: Dongsheng Li; Michael H Nielsen; Jillian F Banfield; Cathrine Frandsen; Jonathan R I Lee; James J De Yoreo
Direction-specific interactions control crystal growth by oriented attachment.
Science (New York, N.Y.) 2012;336(6084):1014-8.
2012: Vincent J Denef; Jillian F Banfield
In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids.
Science (New York, N.Y.) 2012;336(6080):462-6.
2012: David M Singer; Jillian F Banfield; Shawn M Chatman; Eugene S Ilton; Kevin M Rosso; Glenn A Waychunas
U(VI) sorption and reduction kinetics on the magnetite (111) surface.
Environmental science & technology 2012;46(7):3821-30.
2012: David M Singer; Jillian F Banfield; Shawn M Chatman; Eugene S Ilton; Kevin M Rosso; Glenn A Waychunas
Identification of simultaneous U(VI) sorption complexes and U(IV) nanoprecipitates on the magnetite (111) surface.
Environmental science & technology 2012;46(7):3811-20.
2012: Jacque C Young; Jillian F Banfield; Rodolphe Barrangou; Brian D Dill; Christophe Fremaux; Robert L Hettich; Philippe Horvath; Chongle Pan; Manesh Shah; Nathan C VerBerkmoes
Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus.
PloS one 2012;7(5):e38077.
2012: Ariel D Weinberger; Rodolphe Barrangou; Vincent J Denef; Wayne M Getz; Michael S Gilmore; Philippe Horvath; Mateusz M Pluciński; Christine L Sun; Brian C Thomas; Jillian F Banfield
Persisting viral sequences shape microbial CRISPR-based immunity.
PLoS computational biology 2012;8(4):e1002475.
2011: Kosuke Fujishima; Brett J Baker; Jillian F Banfield; Massimo Di Giulio; Christopher S Miller; Asako Sato; Junichi Sugahara; Kanako Takesue; Masaru Tomita; Akio Kanai
A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.
Nucleic acids research 2011;39(22):9695-704.
2011: Alexis P Yelton; Adam Zemla; Nicholas Justice; Sheri L Simmons; Michael P Thelen; Brian C Thomas; Paul Wilmes; Jillian F Banfield
A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes.
PLoS computational biology 2011;7(10):e1002230.
2011: Yongqin Jiao; Manesh Shah; Nathan C VerBerkmoes; Jillian F Banfield; Patrik D'haeseleer; Brian D Dill; Robert L Hettich; Michael P Thelen
Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community.
Applied and environmental microbiology 2011;77(15):5230-7.
2011: Christopher P Belnap; Vincent J Denef; Robert L Hettich; Chongle Pan; Nagiza F Samatova; Jillian F Banfield
Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions.
The ISME journal 2011;5(7):1152-61.
2011: Chongle Pan; Curt R Fischer; Doug Hyatt; Benjamin P Bowen; Robert L Hettich; Jillian F Banfield
Quantitative tracking of isotope flows in proteomes of microbial communities.
Molecular & cellular proteomics : MCP 2011;10(4):M110.006049.
2011: Michael J Morowitz; Vincent J Denef; Elizabeth K Costello; Brian C Thomas; Valeriy Poroyko; David A Relman; Jillian F Banfield
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(3):1128-33.
2011: Benjamin P Bowen; Curt R Fischer; Jillian F Banfield; Richard Baran; Trent Northen
Improved genome annotation through untargeted detection of pathway-specific metabolites.
BMC genomics 2011;12 Suppl 1():S6.
2011: Christopher S Miller; Steven W Singer; Brian C Thomas; Brett J Baker; Jillian F Banfield
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.
Genome biology 2011;12(5):R44.
2011: David T Pride; Christine L Sun; Julia Salzman; Nitya Rao; Peter Loomer; Gary C Armitage; Jillian F Banfield; David A Relman
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time.
Genome research 2011;21(1):126-36.
2010: Stephen J Callister; Michael J Wilkins; Carrie D Nicora; Kenneth H Williams; Jillian F Banfield; Nathan C VerBerkmoes; Robert L Hettich; Lucie N'Guessan; Paula J Mouser; Hila Elifantz; Richard D Smith; Derek R Lovley; Mary S Lipton; Philip E Long
Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.
Environmental science & technology 2010;44(23):8897-903.
2010: Steven W Singer; Brian K Erickson; Nathan C VerBerkmoes; Mona Hwang; Manesh B Shah; Robert L Hettich; Jillian F Banfield; Michael P Thelen
Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities.
The ISME journal 2010;4(11):1398-409.
2010: John W Moreau; Robert A Zierenberg; Jillian F Banfield
Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage.
Applied and environmental microbiology 2010;76(14):4819-28.
2010: Ryan S Mueller; Vincent J Denef; Linda H Kalnejais; K Blake Suttle; Brian C Thomas; Paul Wilmes; Richard L Smith; D Kirk Nordstrom; R Blaine McCleskey; Manesh B Shah; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Ecological distribution and population physiology defined by proteomics in a natural microbial community.
Molecular systems biology 2010;6():374.
2010: Brett Baker; Luis R Comolli; Gregory J Dick; Loren Hauser; Doug Hyatt; Brian Dill; Miriam L Land; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Enigmatic, ultrasmall, uncultivated Archaea.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(19):8806-11.
2010: Brian K Erickson; Ryan S Mueller; Nathan C VerBerkmoes; Manesh Shah; Steven W Singer; Michael P Thelen; Jillian F Banfield; Robert L Hettich
Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community.
Journal of proteome research 2010;9(5):2148-59.
2010: Vincent J Denef; Ryan S Mueller; Jillian F Banfield
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.
The ISME journal 2010;4(5):599-610.
2010: Christopher P Belnap; Chongle Pan; Nathan C VerBerkmoes; Mary E Power; Nagiza F Samatova; Rudolf L Carver; Robert L Hettich; Jillian F Banfield
Cultivation and quantitative proteomic analyses of acidophilic microbial communities.
The ISME journal 2010;4(4):520-30.
2010: Vincent J Denef; Linda H Kalnejais; Ryan S Mueller; Paul Wilmes; Brett J Baker; Brian C Thomas; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(6):2383-90.
2010: Paul Wilmes; Benjamin P Bowen; Brian C Thomas; Ryan S Mueller; Vincent J Denef; Nathan C VerBerkmoes; Robert L Hettich; Trent R Northen; Jillian F Banfield
Metabolome-proteome differentiation coupled to microbial divergence.
mBio 2010;1(5):.
2010: Chongle Pan; Byung H Park; W Hayes McDonald; Patricia A Carey; Jillian F Banfield; Nathan C VerBerkmoes; Robert L Hettich; Nagiza F Samatova
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.
BMC bioinformatics 2010;11():118.
2009: Jillian F Banfield; Mark Young
Microbiology. Variety--the splice of life--in microbial communities.
Science (New York, N.Y.) 2009;326(5957):1198-9.
2009: Michael J Wilkins; Nathan C VerBerkmoes; Kenneth H Williams; Stephen J Callister; Paula J Mouser; Hila Elifantz; A Lucie N'guessan; Brian C Thomas; Carrie D Nicora; Manesh B Shah; Paul Abraham; Mary S Lipton; Derek R Lovley; Robert L Hettich; Philip E Long; Jillian F Banfield
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.
Applied and environmental microbiology 2009;75(20):6591-9.
2009: Kenneth H Williams; Andreas Kemna; Michael J Wilkins; Jennifer Druhan; Evan Arntzen; A Lucie N'Guessan; Philip E Long; Susan S Hubbard; Jillian F Banfield
Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation.
Environmental science & technology 2009;43(17):6717-23.
2009: Daniela S Aliaga Goltsman; Vincent J Denef; Steven W Singer; Nathan C VerBerkmoes; Mark Lefsrud; Ryan S Mueller; Gregory J Dick; Christine L Sun; Korin E Wheeler; Adam Zemla; Brett Baker; Loren Hauser; Miriam Land; Manesh B Shah; Michael P Thelen; Robert L Hettich; Jillian F Banfield
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.
Applied and environmental microbiology 2009;75(13):4599-615.
2009: Karelyn Cruz-Martínez; K Blake Suttle; Eoin L Brodie; Mary E Power; Gary L Andersen; Jillian F Banfield
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland.
The ISME journal 2009;3(6):738-44.
2009: Hengzhong Zhang; Bin Chen; Jillian F Banfield
The size dependence of the surface free energy of titania nanocrystals.
Physical chemistry chemical physics : PCCP 2009;11(14):2553-8.
2009: Brett Baker; Gene W Tyson; Lindsey Goosherst; Jillian F Banfield
Insights into the diversity of eukaryotes in acid mine drainage biofilm communities.
Applied and environmental microbiology 2009;75(7):2192-9.
2009: Nathan C VerBerkmoes; Vincent J Denef; Robert L Hettich; Jillian F Banfield
Systems biology: Functional analysis of natural microbial consortia using community proteomics.
Nature reviews. Microbiology 2009;7(3):196-205.
2009: Luis R Comolli; Brett Baker; Kenneth H Downing; Cristina E Siegerist; Jillian F Banfield
Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon.
The ISME journal 2009;3(2):159-67.
2009: Paul Wilmes; Jonathan P Remis; Mona Hwang; Manfred Auer; Michael P Thelen; Jillian F Banfield
Natural acidophilic biofilm communities reflect distinct organismal and functional organization.
The ISME journal 2009;3(2):266-70.
2009: Vincent J Denef; Nathan C VerBerkmoes; Manesh B Shah; Paul Abraham; Mark Lefsrud; Robert L Hettich; Jillian F Banfield
Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.
Environmental microbiology 2009;11(2):313-25.
2009: Gregory J Dick; Anders F Andersson; Brett J Baker; Sheri L Simmons; Brian C Thomas; A Pepper Yelton; Jillian F Banfield
Community-wide analysis of microbial genome sequence signatures.
Genome biology 2009;10(8):R85.
2008: Paul Wilmes; Anders F Andersson; Mark G Lefsrud; Margaret Wexler; Manesh Shah; Bing Zhang; Robert L Hettich; Philip L Bond; Nathan C VerBerkmoes; Jillian F Banfield
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal.
The ISME journal 2008;2(8):853-64.
2008: Sheri L Simmons; Genevieve DiBartolo; Vincent J Denef; Daniela S Aliaga Goltsman; Michael P Thelen; Jillian F Banfield
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation.
PLoS biology 2008;6(7):e177.
2008: Steven W Singer; Clara S Chan; Adam Zemla; Nathan C VerBerkmoes; Mona Hwang; Robert L Hettich; Jillian F Banfield; Michael P Thelen
Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community.
Applied and environmental microbiology 2008;74(14):4454-62.
2008: Anders F Andersson; Jillian F Banfield
Virus population dynamics and acquired virus resistance in natural microbial communities.
Science (New York, N.Y.) 2008;320(5879):1047-50.
2008: Chris Jeans; Steven W Singer; Clara S Chan; Nathan C VerBerkmoes; Manesh Shah; Robert L Hettich; Jillian F Banfield; Michael P Thelen
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community.
The ISME journal 2008;2(5):542-50.
2008: Gene W Tyson; Jillian F Banfield
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses.
Environmental microbiology 2008;10(1):200-7.
2007: John M Eppley; Gene W Tyson; Wayne M Getz; Jillian F Banfield
Genetic exchange across a species boundary in the archaeal genus ferroplasma.
Genetics 2007;177(1):407-16.
2007: Vincent J Denef; Manesh B Shah; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.
Journal of proteome research 2007;6(8):3152-61.
2007: John W Moreau; Peter K Weber; Michael C Martin; Benjamin Gilbert; Ian D Hutcheon; Jillian F Banfield
Extracellular proteins limit the dispersal of biogenic nanoparticles.
Science (New York, N.Y.) 2007;316(5831):1600-3.
2007: Hengzhong Zhang; James R Rustad; Jillian F Banfield
Interaction between water molecules and zinc sulfide nanoparticles studied by temperature-programmed desorption and molecular dynamics simulations.
The journal of physical chemistry. A 2007;111(23):5008-14.
2007: Ian Lo; Vincent J Denef; Nathan C VerBerkmoes; Manesh B Shah; Daniela Goltsman; Genevieve DiBartolo; Gene W Tyson; Eric E Allen; Rajeev J Ram; John C Detter; Paul Richardson; Michael P Thelen; Robert L Hettich; Jillian F Banfield
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.
Nature 2007;446(7135):537-41.
2007: Bin Chen; Hengzhong Zhang; Benjamin Gilbert; Jillian F Banfield
Mechanism of inhibition of nanoparticle growth and phase transformation by surface impurities.
Physical review letters 2007;98(10):106103.
2007: Eric E Allen; Gene W Tyson; Rachel J Whitaker; John C Detter; Paul M Richardson; Jillian F Banfield
Genome dynamics in a natural archaeal population.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(6):1883-8.
2007: John M Eppley; Gene W Tyson; Wayne M Getz; Jillian F Banfield
Strainer: software for analysis of population variation in community genomic datasets.
BMC bioinformatics 2007;8():398.
2006: Brett Baker; Gene W Tyson; Richard Webb; Judith Flanagan; Philip Hugenholtz; Eric E Allen; Jillian F Banfield
Lineages of acidophilic archaea revealed by community genomic analysis.
Science (New York, N.Y.) 2006;314(5807):1933-5.
2006: Katherine A Dunphy Guzman; Michael P Finnegan; Jillian F Banfield
Influence of surface potential on aggregation and transport of titania nanoparticles.
Environmental science & technology 2006;40(24):7688-93.
2006: Rachel J Whitaker; Jillian F Banfield
Population genomics in natural microbial communities.
Trends in ecology & evolution 2006;21(9):508-16.
2006: Benjamin Gilbert; Feng Huang; Zhang Lin; Carmen Goodell; Hengzhong Zhang; Jillian F Banfield
Surface chemistry controls crystallinity of ZnS nanoparticles.
Nano letters 2006;6(4):605-10.
2006: Katherine A Dunphy Guzmán; Margaret R Taylor; Jillian F Banfield
Environmental risks of nanotechnology: National Nanotechnology Initiative funding, 2000-2004.
Environmental science & technology 2006;40(5):1401-7.
2005: Kenneth H Williams; Dimitrios Ntarlagiannis; Lee D Slater; Alice Dohnalkova; Susan S Hubbard; Jillian F Banfield
Geophysical imaging of stimulated microbial biomineralization.
Environmental science & technology 2005;39(19):7592-600.
2005: Gene W Tyson; Ian Lo; Brett Baker; Eric E Allen; Philip Hugenholtz; Jillian F Banfield
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community.
Applied and environmental microbiology 2005;71(10):6319-24.
2005: Gene W Tyson; Jillian F Banfield
Cultivating the uncultivated: a community genomics perspective.
Trends in microbiology 2005;13(9):411-5.
2005: Pavan K Naicker; Peter T Cummings; Hengzhong Zhang; Jillian F Banfield
Characterization of titanium dioxide nanoparticles using molecular dynamics simulations.
The journal of physical chemistry. B 2005;109(32):15243-9.
2005: Rajeev J Ram; Nathan C VerBerkmoes; Michael P Thelen; Gene W Tyson; Brett Baker; Robert C Blake; Manesh Shah; Robert L Hettich; Jillian F Banfield
Community proteomics of a natural microbial biofilm.
Science (New York, N.Y.) 2005;308(5730):1915-20.
2005: Eric E Allen; Jillian F Banfield
Community genomics in microbial ecology and evolution.
Nature reviews. Microbiology 2005;3(6):489-98.
2005: David Baumler; Kwang-Cheol Jeong; Brian G Fox; Jillian F Banfield; Charles W Kaspar
Sulfate requirement for heterotrophic growth of "Ferroplasma acidarmanus" strain fer1.
Research in microbiology 2005;156(4):492-8.
2005: Yohey Suzuki; Shelly D Kelly; Kenneth M Kemner; Jillian F Banfield
Direct microbial reduction and subsequent preservation of uranium in natural near-surface sediment.
Applied and environmental microbiology 2005;71(4):1790-7.
2005: Feng Huang; Jillian F Banfield
Size-dependent phase transformation kinetics in nanocrystalline ZnS.
Journal of the American Chemical Society 2005;127(12):4523-9.
2005: Jillian F Banfield; Nathan C VerBerkmoes; Robert L Hettich; Michael P Thelen
Proteogenomic approaches for the molecular characterization of natural microbial communities.
Omics : a journal of integrative biology 2005;9(4):301-33.
2004: Brett Baker; Michelle A Lutz; Scott C Dawson; Philip L Bond; Jillian F Banfield
Metabolically active eukaryotic communities in extremely acidic mine drainage.
Applied and environmental microbiology 2004;70(10):6264-71.
2004: Jennifer L Macalady; Martha M Vestling; David Baumler; Nick Boekelheide; Charles W Kaspar; Jillian F Banfield
Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid.
Extremophiles : life under extreme conditions 2004;8(5):411-9.
2004: Benjamin Gilbert; Feng Huang; Hengzhong Zhang; Glenn A Waychunas; Jillian F Banfield
Nanoparticles: strained and stiff.
Science (New York, N.Y.) 2004;305(5684):651-4.
2004: Benjamin Gilbert; Hengzhong Zhang; Feng Huang; Jillian F Banfield; Yang Ren; Daniel Haskel; JC Lang; George Srajer; Astrid Jürgensen; Glenn A Waychunas
Analysis and simulation of the structure of nanoparticles that undergo a surface-driven structural transformation.
The Journal of chemical physics 2004;120(24):11785-95.
2004: Feng Huang; Benjamin Gilbert; Hengzhong Zhang; Jillian F Banfield
Reversible, surface-controlled structure transformation in nanoparticles induced by an aggregation state.
Physical review letters 2004;92(15):155501.
2004: M Labrenz; Jillian F Banfield
Sulfate-reducing bacteria-dominated biofilms that precipitate ZnS in a subsurface circumneutral-pH mine drainage system.
Microbial ecology 2004;47(3):205-17.
2004: Clara S Chan; Gelsomina De Stasio; Susan A Welch; Marco Girasole; Bradley H Frazer; Maria V Nesterova; Sirine Fakra; Jillian F Banfield
Microbial polysaccharides template assembly of nanocrystal fibers.
Science (New York, N.Y.) 2004;303(5664):1656-8.
2004: Gene W Tyson; Jarrod Chapman; Philip Hugenholtz; Eric E Allen; Rajeev J Ram; Paul M Richardson; Victor V Solovyev; Edward M Rubin; Dan S Rokhsar; Jillian F Banfield
Community structure and metabolism through reconstruction of microbial genomes from the environment.
Nature 2004;428(6978):37-43.
2003: Brett Baker; Philip Hugenholtz; Scott C Dawson; Jillian F Banfield
Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes.
Applied and environmental microbiology 2003;69(9):5512-8.
2003: Hengzhong Zhang; Benjamin Gilbert; Feng Huang; Jillian F Banfield
Water-driven structure transformation in nanoparticles at room temperature.
Nature 2003;424(6952):1025-9.
2003: Brett Baker; Jillian F Banfield
Microbial communities in acid mine drainage.
FEMS microbiology ecology 2003;44(2):139-52.
2003: Thomas M Gihring; Philip L Bond; Stephen C Peters; Jillian F Banfield
Arsenic resistance in the archaeon "Ferroplasma acidarmanus": new insights into the structure and evolution of the ars genes.
Extremophiles : life under extreme conditions 2003;7(2):123-30.
2003: Yohey Suzuki; Shelly D Kelly; Kenneth M Kemner; Jillian F Banfield
Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment.
Applied and environmental microbiology 2003;69(3):1337-46.
2002: Gregory R Crocetti; Jillian F Banfield; Jürg Keller; Philip L Bond; Linda L Blackall
Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes.
Microbiology (Reading, England) 2002;148(Pt 11):3353-64.
2002: Yohey Suzuki; Shelly D Kelly; Kenneth M Kemner; Jillian F Banfield
Nanometre-size products of uranium bioreduction.
Nature 2002;419(6903):134.
2002: Dianne K Newman; Jillian F Banfield
Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems.
Science (New York, N.Y.) 2002;296(5570):1071-7.
2001: Thomas M Gihring; Jillian F Banfield
Arsenite oxidation and arsenate respiration by a new Thermus isolate.
FEMS microbiology letters 2001;204(2):335-40.
2001: Thomas M Gihring; GK Druschel; R B McCleskey; Robert J Hamers; Jillian F Banfield
Rapid arsenite oxidation by Thermus aquaticus and Thermus thermophilus: field and laboratory investigations.
Environmental science & technology 2001;35(19):3857-62.
2001: Jillian F Banfield; J W Moreau; C S Chan; Susan A Welch; B Little
Mineralogical biosignatures and the search for life on Mars.
Astrobiology 2001;1(4):447-65.
2000: M Labrenz; GK Druschel; T Thomsen-Ebert; B Gilbert; Susan A Welch; Kenneth M Kemner; Graham A Logan; Roger E Summons; Gelsomina De Stasio; Philip L Bond; Barry Lai; Shelly D Kelly; Jillian F Banfield
Formation of sphalerite (ZnS) deposits in natural biofilms of sulfate-reducing bacteria.
Science (New York, N.Y.) 2000;290(5497):1744-7.
2000: Philip L Bond; GK Druschel; Jillian F Banfield
Comparison of acid mine drainage microbial communities in physically and geochemically distinct ecosystems.
Applied and environmental microbiology 2000;66(11):4962-71.
2000: Philip L Bond; S P Smriga; Jillian F Banfield
Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site.
Applied and environmental microbiology 2000;66(9):3842-9.
2000: Jillian F Banfield; Susan A Welch; H Zhang; T T Ebert; R L Penn
Aggregation-based crystal growth and microstructure development in natural iron oxyhydroxide biomineralization products.
Science (New York, N.Y.) 2000;289(5480):751-4.
2000: KJ Edwards; Philip L Bond; Jillian F Banfield
Characteristics of attachment and growth of Thiobacillus caldus on sulphide minerals: a chemotactic response to sulphur minerals?
Environmental microbiology 2000;2(3):324-32.
2000: KJ Edwards; Philip L Bond; Thomas M Gihring; Jillian F Banfield
An archaeal iron-oxidizing extreme acidophile important in acid mine drainage.
Science (New York, N.Y.) 2000;287(5459):1796-9.
2000: Jillian F Banfield; C R Marshall
Perspectives: earth science and evolution. Genomics and the geosciences.
Science (New York, N.Y.) 2000;287(5453):605-6.
1999: KJ Edwards; Thomas M Gihring; Jillian F Banfield
Seasonal variations in microbial populations and environmental conditions in an extreme acid mine drainage environment.
Applied and environmental microbiology 1999;65(8):3627-32.
1999: Jillian F Banfield; W W Barker; Susan A Welch; A Taunton
Biological impact on mineral dissolution: application of the lichen model to understanding mineral weathering in the rhizosphere.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(7):3404-11.