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Victor Lamzin

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X Ray Crystallography

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TOP 3
Gerrit G Langer; Tim Wiegels; Ciaran Carolan; Saul Hazledine; Victor S Lamzin
Visual automated macromolecular model building.
T V Fedorova; V P Khotchenkov; Olga V Koroleva; I G Maisuradze; Konstantin M Polyakov; A A Trofimov; EA Vavilova; IN Zorov; Sergei Benevolensky; A M Chulkin; Victor S Lamzin
Purification, biochemical characterization, and structure of recombinant endo-1,4-β-xylanase XylE.
Gerrit G Langer; Ciaran G Carolan; Guillaume X Evrard; Victor S Lamzin
Fragmentation-tree density representation for crystallographic modelling of bound ligands.

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All Publications

2013: Gerrit G Langer; Tim Wiegels; Ciaran Carolan; Saul Hazledine; Victor S Lamzin
Visual automated macromolecular model building.
Acta crystallographica. Section D, Biological crystallography 2013;69(Pt 4):635-41.
2012: T V Fedorova; V P Khotchenkov; Olga V Koroleva; I G Maisuradze; Konstantin M Polyakov; A A Trofimov; EA Vavilova; IN Zorov; Sergei Benevolensky; A M Chulkin; Victor S Lamzin
Purification, biochemical characterization, and structure of recombinant endo-1,4-β-xylanase XylE.
Biochemistry. Biokhimii͡a 2012;77(10):1190-8.
2012: Gerrit G Langer; Ciaran G Carolan; Guillaume X Evrard; Victor S Lamzin
Fragmentation-tree density representation for crystallographic modelling of bound ligands.
Journal of molecular biology 2012;419(3-4):211-22.
2012: Tim Wiegels; Victor S Lamzin
Use of noncrystallographic symmetry for automated model building at medium to low resolution.
Acta crystallographica. Section D, Biological crystallography 2012;68(Pt 4):446-53.
2012: Carsten Wrenger; Rositsa Jordanova; Victor S Lamzin; Ingrid B Muller; Ariel M Silber; Matthew R Groves
Aspartate aminotransferase: bridging carbohydrate and energy metabolism in Plasmodium falciparum.
Current drug metabolism 2012;13(3):332-6.
2012: Darya V Urusova; Alexei A Vagin; Svetlana Antonyuk; Hans D Bartunik; Gleb P Burenkov; Zbigniew Dauter; Michail N Isupov; Galina S Kachalova; Victor S Lamzin; Andrey A Lebedev; William R Melik-Adamyan; Thomas D Mueller; Galina Obmolova; Klaus D Schnackerz
Crystal structure of D-serine dehydratase from Escherichia coli.
Biochimica et biophysica acta 2012;1824(3):422-32.
2011: Johan Unge; Victor S Lamzin; Christoph Mueller-Dieckmann; Santosh Panjikar; Paul Tucker; Manfred S Weiss
On the routine use of soft X-rays in macromolecular crystallography. Part V. Molecular replacement and anomalous scattering.
Acta crystallographica. Section D, Biological crystallography 2011;67(Pt 8):729-38.
2011: Andrea Schmidt; Martha Teeter; Edgar Weckert; Victor S Lamzin
Crystal structure of small protein crambin at 0.48 Å resolution.
Acta crystallographica. Section F, Structural biology and crystallization communications 2011;67(Pt 4):424-8.
2011: Johan Hattne; Victor S Lamzin
A moment invariant for evaluating the chirality of three-dimensional objects.
Journal of the Royal Society, Interface / the Royal Society 2011;8(54):144-51.
2010: David Watts; Jochen Müller-Dieckmann; Gohar Tsakanova; Victor S Lamzin; Matthew R Groves
Quantitive evaluation of macromolecular crystallization experiments using 1,8-ANS fluorescence.
Acta crystallographica. Section D, Biological crystallography 2010;66(Pt 8):901-8.
2010: Andrea Schmidt; Victor S Lamzin
Internal motion in protein crystal structures.
Protein science : a publication of the Protein Society 2010;19(5):944-53.
2009: Santosh Panjikar; Venkataraman Parthasarathy; Victor S Lamzin; Manfred S Weiss; Paul Tucker
On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 10):1089-97.
2009: Philipp Heuser; Gerrit G Langer; Victor S Lamzin
Interpretation of very low resolution X-ray electron-density maps using core objects.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 7):690-6.
2009: Konstantin M Polyakov; Konstantin M Boyko; Tamara V Tikhonova; Alvira Slutsky; Alexey N Antipov; Renata A Zvyagilskaya; Alexander N Popov; Gleb P Bourenkov; Victor S Lamzin; Vladimir O Popov
High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens.
Journal of molecular biology 2009;389(5):846-62.
2009: Konstantin M Polyakov; Tatyana V Fedorova; Elena V Stepanova; Evgeny A Cherkashin; Sergei A Kurzeev; Boris V Strokopytov; Victor S Lamzin; Olga V Koroleva
Structure of native laccase from Trametes hirsuta at 1.8 A resolution.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 6):611-7.
2008: Johan Hattne; Victor S Lamzin
Pattern-recognition-based detection of planar objects in three-dimensional electron-density maps.
Acta crystallographica. Section D, Biological crystallography 2008;D64(Pt 8):834-42.
2008: Andrea Schmidt; Karl Gruber; Christoph Kratky; Victor S Lamzin
Atomic resolution crystal structures and quantum chemistry meet to reveal subtleties of hydroxynitrile lyase catalysis.
The Journal of biological chemistry 2008;283(31):21827-36.
2008: Krista Joosten; Serge X Cohen; Paul Emsley; Wijnand Mooij; Victor S Lamzin; Anastassis Perraks
A knowledge-driven approach for crystallographic protein model completion.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 4):416-24.
2008: Gerrit G Langer; Serge X Cohen; Victor S Lamzin; Anastassis Perraks
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.
Nature protocols 2008;3(7):1171-9.
2008: Serge X Cohen; Marouane Ben Jelloul; Fei Long; Alexei A Vagin; Puck Knipscheer; Joyce H G Lebbink; Titia K Sixma; Victor S Lamzin; Garib N Murshudov; Anastassis Perraks
ARP/wARP and molecular replacement: the next generation.
Acta crystallographica. Section D, Biological crystallography 2008;64(Pt 1):49-60.
2007: Katja Schirwitz; Andrea Schmidt; Victor S Lamzin
High-resolution structures of formate dehydrogenase from Candida boidinii.
Protein science : a publication of the Protein Society 2007;16(6):1146-56.
2007: Rob Meijers; Hans-Werner Adolph; Zbigniew Dauter; Keith S Wilson; Victor S Lamzin; Eila S Cedergren-Zeppezauer
Structural evidence for a ligand coordination switch in liver alcohol dehydrogenase.
Biochemistry 2007;46(18):5446-54.
2007: Guillaume X Evrard; Gerrit G Langer; Anastassis Perraks; Victor S Lamzin
Assessment of automatic ligand building in ARP/wARP.
Acta crystallographica. Section D, Biological crystallography 2007;63(Pt 1):108-17.
2006: Sudhir Babu Pothineni; Tilo Strutz; Victor S Lamzin
Automated detection and centring of cryocooled protein crystals.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 11):1358-68.
2006: Andrey V Lyashenko; Isabel Bento; Viatcheslav N Zaitsev; Nadezhda E Zhukhlistova; Yuliya N Zhukova; Azat G Gabdoulkhakov; Ekaterina Yu Morgunova; Wolfgang Voelter; Galina S Kachalova; Elena V Stepanova; Olga V Koroleva; Victor S Lamzin; Vladimir I Tishkov; Christian Betzel; Peter F Lindley; Al'bert M Mikhailov
X-ray structural studies of the fungal laccase from Cerrena maxima.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2006;11(8):963-73.
2006: Andrey V Lyashenko; Nadezhda E Zhukhlistova; Azat G Gabdoulkhakov; Yuliya N Zhukova; Wolfgang Voelter; Viatcheslav N Zaitsev; Isabel Bento; Elena V Stepanova; Galina S Kachalova; Olga V Koroleva; Evgeny Cherkashin; Vladimir I Tishkov; Victor S Lamzin; Katja Schirwitz; Ekaterina Yu Morgunova; Christian Betzel; Peter F Lindley; Al'bert M Mikhailov
Purification, crystallization and preliminary X-ray study of the fungal laccase from Cerrena maxima.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 10):954-7.
2006: Mohammad W Bahar; C Ballard; Serge X Cohen; Kevin Cowtan; Eleanor J Dodson; Paul Emsley; Robert M Esnouf; R Keegan; Victor S Lamzin; Gerrit G Langer; Vladimir M Levdikov; Fei Long; C Meier; Axel Muller; Garib N Murshudov; Anastassis Perraks; Christian Siebold; N Stein; M G W Turkenburg; Alexei A Vagin; Martyn D Winn; G Winter; Keith S Wilson
SPINE workshop on automated X-ray analysis: a progress report.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 10):1170-83.
2006: Brice Kauffmann; Manfred S Weiss; Victor S Lamzin; Andrea Schmidt
How to avoid premature decay of your macromolecular crystal: a quick soak for long life.
Structure (London, England : 1993) 2006;14(7):1099-105.
2006: K M Boyko; Konstantin M Polyakov; Tamara V Tikhonova; Alvira Slutsky; Alexey N Antipov; Renata A Zvyagilskaya; Gleb P Bourenkov; Alexander N Popov; Victor S Lamzin; Vladimir O Popov
Crystallization and preliminary X-ray analysis of cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 3):215-7.
2005: Andrea Schmidt; Victor S Lamzin
Extraction of functional motion in trypsin crystal structures.
Acta crystallographica. Section D, Biological crystallography 2005;61(Pt 8):1132-9.
2005: Santosh Panjikar; Venkataraman Parthasarathy; Victor S Lamzin; Manfred S Weiss; Paul Tucker
Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment.
Acta crystallographica. Section D, Biological crystallography 2005;61(Pt 4):449-57.
2004: Petrus H Zwart; Gerrit G Langer; Victor S Lamzin
Modelling bound ligands in protein crystal structures.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 12 Pt 1):2230-9.
2004: Serge X Cohen; Richard J Morris; Francisco Fernandez; Marouane Ben Jelloul; Mattheos Kakaris; Venkataraman Parthasarathy; Victor S Lamzin; Gerard J Kleywegt; Anastassis Perraks
Towards complete validated models in the next generation of ARP/wARP.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 12 Pt 1):2222-9.
2004: Rob Meijers; Elena V Blagova; Vladimir M Levdikov; Galina N Rudenskaya; Galina G Chestukhina; Tatiana Akimkina; Sergey V Kostrov; Victor S Lamzin; Inna P Kuranova
The crystal structure of glutamyl endopeptidase from Bacillus intermedius reveals a structural link between zymogen activation and charge compensation.
Biochemistry 2004;43(10):2784-91.
2004: Petrus H Zwart; Victor S Lamzin
The influence of positional errors on the Debye effects.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 2):220-6.
2004: Richard J Morris; Petrus H Zwart; Serge Cohen; Francisco Fernandez; Mattheos Kakaris; Olga Kirillova; Clemens Vonrhein; Anastassis Perraks; Victor S Lamzin
Breaking good resolutions with ARP/wARP.
Journal of synchrotron radiation 2004;11(Pt 1):56-9.
2003: Petrus H Zwart; Victor S Lamzin
Distance distributions and electron-density characteristics of protein models.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 12):2104-13.
2003: Andrea Schmidt; Christian Jelsch; Peter Ostergaard; Wojciech Rypniewski; Victor S Lamzin
Trypsin revisited: crystallography AT (SUB) atomic resolution and quantum chemistry revealing details of catalysis.
The Journal of biological chemistry 2003;278(44):43357-62.
2003: Tatiana V Pegasova; Petrus H Zwart; Olga V Koroleva; Elena V Stepanova; Denis V Rebrikov; Victor S Lamzin
Crystallization and preliminary X-ray analysis of a four-copper laccase from Coriolus hirsutus.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 8):1459-61.
2003: Richard J Morris; Anastassis Perraks; Victor S Lamzin
ARP/wARP and automatic interpretation of protein electron density maps.
Methods in enzymology 2003;374():229-44.
2002: Andrea Schmidt; Victor S Lamzin
Veni, vidi, vici - atomic resolution unravelling the mysteries of protein function.
Current opinion in structural biology 2002;12(6):698-703.
2002: Andrea Schmidt; Ana Gonzalez; Richard J Morris; Marcelo Costabel; Pedro Alzari; Victor S Lamzin
Advantages of high-resolution phasing: MAD to atomic resolution.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 9):1433-41.
2002: Jozef Sevcík; Victor S Lamzin; Zbigniew Dauter; Keith S Wilson
Atomic resolution data reveal flexibility in the structure of RNase Sa.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 8):1307-13.
2002: Richard J Morris; Anastassis Perraks; Victor S Lamzin
ARP/wARP's model-building algorithms. I. The main chain.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 6 Pt 2):968-75.
2002: Adelia Razeto; Sunil Kochhar; Herbert Hottinger; Miroslava Dauter; Keith S Wilson; Victor S Lamzin
Domain closure, substrate specificity and catalysis of D-lactate dehydrogenase from Lactobacillus bulgaricus.
Journal of molecular biology 2002;318(1):109-19.
2002: Diego M A Guérin; Marie-Bernard Lascombe; Marcelo Costabel; Hélène Souchon; Victor S Lamzin; Pierre Béguin; Pedro Alzari
Atomic (0.94 A) resolution structure of an inverting glycosidase in complex with substrate.
Journal of molecular biology 2002;316(5):1061-9.
2002: Andrey Galkin; Alexey S Kutsenko; Nataliya P Bajulina; Natalia G Esipova; Victor S Lamzin; Alexander V Mesentsev; Dmitriy V Shelukho; Tamara V Tikhonova; Vladimir I Tishkov; Tatyana B Ustinnikova; Vladimir O Popov
Site-directed mutagenesis of the essential arginine of the formate dehydrogenase active centre.
Biochimica et biophysica acta 2002;1594(1):136-49.
2001: VR Samygina; Alexander N Popov; Elena V Rodina; Natalya N Vorobyeva; Victor S Lamzin; Konstantin M Polyakov; Svetlana A Kurilova; Tatyana I Nazarova; Svetlana M Avaeva
The structures of Escherichia coli inorganic pyrophosphatase complexed with Ca(2+) or CaPP(i) at atomic resolution and their mechanistic implications.
Journal of molecular biology 2001;314(3):633-45.
2001: Anastassis Perraks; M Harkiolaki; K S Wilson; Victor S Lamzin
ARP/wARP and molecular replacement.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 10):1445-50.
2001: Vladimir V Barynin; Mei M Whittaker; Svetlana Antonyuk; Victor S Lamzin; Pauline M Harrison; Peter J Artymiuk; James W Whittaker
Crystal structure of manganese catalase from Lactobacillus plantarum.
Structure (London, England : 1993) 2001;9(8):725-38.
2001: Rob Meijers; R J Morris; Hans-Werner Adolph; A Merli; Victor S Lamzin; Eila S Cedergren-Zeppezauer
On the enzymatic activation of NADH.
The Journal of biological chemistry 2001;276(12):9316-21.
2000: Victor S Lamzin; Anastassis Perraks
Current state of automated crystallographic data analysis.
Nature structural biology 2000;7 Suppl():978-81.
2000: Victor S Lamzin; Anastassis Perraks; G Bricogne; J Jiang; S Swaminathan; Joel Sussman
Apotheosis, not apocalypse: methods in protein crystallography.
Acta crystallographica. Section D, Biological crystallography 2000;56(Pt 11):1510-1.
2000: Hans-Werner Adolph; P Zwart; Rob Meijers; I Hubatsch; Martin Kiefer; Victor S Lamzin; Eila S Cedergren-Zeppezauer
Structural basis for substrate specificity differences of horse liver alcohol dehydrogenase isozymes.
Biochemistry 2000;39(42):12885-97.
2000: VR Samygina; Svetlana Antonyuk; Victor S Lamzin; Alexander N Popov
Improving the X-ray resolution by reversible flash-cooling combined with concentration screening, as exemplified with PPase.
Acta crystallographica. Section D, Biological crystallography 2000;56(Pt 5):595-603.
1999: Anastassis Perraks; R Morris; Victor S Lamzin
Automated protein model building combined with iterative structure refinement.
Nature structural biology 1999;6(5):458-63.
1999: Anastassis Perraks; Ekaterini Antoniadou-Vyza; P Tsitsa; Victor S Lamzin; K S Wilson; S J Hamodrakas
Molecular, crystal and solution structure of a beta-cyclodextrin complex with the bromide salt of 2-(3-dimethylaminopropyl)tricyclo[3.3.1.1(3,7)]decan-2-ol, a potent antimicrobial drug.
Carbohydrate research 1999;317(1-4):19-28.
1998: M A Walsh; T R Schneider; L C Sieker; Z Dauter; Victor S Lamzin; K S Wilson
Refinement of triclinic hen egg-white lysozyme at atomic resolution.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 4):522-46.
1998: Eleanor J Dodson; Gideon J Davies; Victor S Lamzin; Garib N Murshudov; Keith S Wilson
Validation tools: can they indicate the information content of macromolecular crystal structures?
Structure (London, England : 1993) 1998;6(6):685-90.
1998: Vladimir M Levdikov; Vladimir V Barynin; A I Grebenko; William Melik-Adamyan; Victor S Lamzin; Keith S Wilson
The structure of SAICAR synthase: an enzyme in the de novo pathway of purine nucleotide biosynthesis.
Structure (London, England : 1993) 1998;6(3):363-76.
1998: EJ Van Asselt; Anastassis Perraks; Kor H Kalk; Victor S Lamzin; Bauke W Dijkstra
Accelerated X-ray structure elucidation of a 36 kDa muramidase/transglycosylase using wARP.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 1):58-73.
1997: Zbigniew Dauter; Victor S Lamzin; Keith S Wilson
The benefits of atomic resolution.
Current opinion in structural biology 1997;7(5):681-8.
1997: Anastassis Perraks; Titia K Sixma; K S Wilson; Victor S Lamzin
wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.
Acta crystallographica. Section D, Biological crystallography 1997;53(Pt 4):448-55.
1997: A V Mesentsev; Victor S Lamzin; Vladimir I Tishkov; T B Ustinnikova; Vladimir O Popov
Effect of pH on kinetic parameters of NAD+-dependent formate dehydrogenase.
The Biochemical journal 1997;321 ( Pt 2)():475-80.
1997: Victor S Lamzin; Keith S Wilson
Automated refinement for protein crystallography.
Methods in enzymology 1997;277():269-305.
1996: Vladimir I Tishkov; A D Matorin; AM Rojkova; Vladimir V Fedorchuk; PA Savitsky; L A Dementieva; Victor S Lamzin; A V Mezentzev; Vladimir O Popov
Site-directed mutagenesis of the formate dehydrogenase active centre: role of the His332-Gln313 pair in enzyme catalysis.
FEBS letters 1996;390(1):104-8.
1996: EH Harutyunyan; I P Kuranova; B K Vainshtein; Wolfgang Ernst Hoehne; Victor S Lamzin; Zbigniew Dauter; Alexey Teplyakov; Keith S Wilson
X-ray structure of yeast inorganic pyrophosphatase complexed with manganese and phosphate.
European journal of biochemistry / FEBS 1996;239(1):220-8.
1994: Vladimir O Popov; Victor S Lamzin
NAD(+)-dependent formate dehydrogenase.
The Biochemical journal 1994;301 ( Pt 3)():625-43.
1994: Victor S Lamzin; Zbigniew Dauter; Vladimir O Popov; EH Harutyunyan; Keith S Wilson
High resolution structures of holo and apo formate dehydrogenase.
Journal of molecular biology 1994;236(3):759-85.
1992: Victor S Lamzin; A E Aleshin; B V Strokopytov; M G Yukhnevich; Vladimir O Popov; EH Harutyunyan; K S Wilson
Crystal structure of NAD-dependent formate dehydrogenase.
European journal of biochemistry / FEBS 1992;206(2):441-52.
1990: Victor S Lamzin; A E Aleshin; I A Shumilin; T B Ustinnikova; Ts A Egorov; E G Arutiunian; Vladimir O Popov
[NAD-dependent formate dehydrogenase of methylotrophic bacteria Pseudomonas sp. 101. III. Comparative analysis].
Bioorganicheskaia khimiia 1990;16(3):345-57.
1990: Victor S Lamzin; A E Aleshin; B O Popov; E G Arutiunian
[NAD-dependent formate dehydrogenase of methylotrophic bacteria Pseudomonas sp. 101. II. Enzyme conformation at 3.0 A resolution].
Bioorganicheskaia khimiia 1990;16(3):336-44.
1990: Vladimir O Popov; I A Shumilin; T B Ustinnikova; Victor S Lamzin; Ts A Egorov
[NAD-dependent formate dehydrogenase from methylotrophic bacteria Pseudomonas sp. 101. I. Amino acid sequence].
Bioorganicheskaia khimiia 1990;16(3):324-35.
1990: A V Bogdanova; T V Cherednikova; T A Egorov; E G Harutyunyan; N A Kurochkina; Victor S Lamzin; A P Savitskiy; I A Shumilin; Vladimir O Popov
Mapping of the immunodominant regions of the NAD-dependent formate dehydrogenase.
FEBS letters 1990;260(2):297-300.
1987: A E Aleshin; Victor S Lamzin; Ia D Devedzhiev; S V Rubinskiĭ; Vladimir O Popov
[X-ray analysis of bacterial NAD-dependent formate dehydrogenase at resolution of 5 angstroms].
Doklady Akademii nauk SSSR 1987;294(4):973-6.
1986: Ia Devedzhiev; Olga Moroz; E G Arutiunian; Victor S Lamzin; Alexey M Egorov
[Crystallization and preliminary X-ray diffraction study of bacterial formate dehydrogenase].
Doklady Akademii nauk SSSR 1986;286(3):757-60.
1986: Victor S Lamzin; V E Asadchikov; Vladimir O Popov; Alexey M Egorov; I V Berezin
[Conformation changes in bacterial formate dehydrogenase during complex-formation with cofactor and its analogs].
Doklady Akademii nauk SSSR 1986;291(4):1011-4.
1985: Victor S Lamzin; V E Asadchikov; Alexey M Egorov; S A Marakushev; Vladimir O Popov
[Modification of bacterial formate dehydrogenase by a mercarbide electron-dense label. X-ray determination of the space between active centers of the enzyme].
Doklady Akademii nauk SSSR 1985;281(3):712-5.