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Christopher Lanczycki

Research Profile

Concepts & Ideas

Genes & Molecular Sequences

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Chemicals & Drugs

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Software

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Publications

TOP 3
Aron Marchler-Bauer; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Chanjuan Zheng; Farideh Chitsaz; Myra K Derbyshire; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; Christopher J Lanczycki; Fu Lu; Shennan Lu; Gabriele H Marchler; Stephen H Bryant
CDD: conserved domains and protein three-dimensional structure.
Abhijit Chakraborty; Christopher J Lanczycki; Sapan Mandloi; Anna R Panchenko; Saikat Chakrabarti
SPEER-SERVER: a web server for prediction of protein specificity determining sites.
Andrew F. Neuwald; Christopher J Lanczycki; Aron Marchler-Bauer
Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures.

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All Publications

2013: Aron Marchler-Bauer; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Chanjuan Zheng; Farideh Chitsaz; Myra K Derbyshire; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; Christopher J Lanczycki; Fu Lu; Shennan Lu; Gabriele H Marchler; Stephen H Bryant
CDD: conserved domains and protein three-dimensional structure.
Nucleic acids research 2013;41(Database issue):D348-52.
2012: Abhijit Chakraborty; Christopher J Lanczycki; Sapan Mandloi; Anna R Panchenko; Saikat Chakrabarti
SPEER-SERVER: a web server for prediction of protein specificity determining sites.
Nucleic acids research 2012;40(Web Server issue):W242-8.
2012: Andrew F. Neuwald; Christopher J Lanczycki; Aron Marchler-Bauer
Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures.
BMC bioinformatics 2012;13():144.
2012: Myra K Derbyshire; Christopher J Lanczycki; Stephen H Bryant; Aron Marchler-Bauer
Annotation of functional sites with the Conserved Domain Database.
Database : the journal of biological databases and curation 2012;2012():bar058.
2011: Aron Marchler-Bauer; Shennan Lu; John B Anderson; Farideh Chitsaz; Myra K Derbyshire; Carol DeWeese-Scott; Jessica H Fong; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; Mikhail Mullokandov; Marina V Omelchenko; Cynthia L Robertson; James S Song; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Naigong Zhang; Chanjuan Zheng; Stephen H Bryant
CDD: a Conserved Domain Database for the functional annotation of proteins.
Nucleic acids research 2011;39(Database issue):D225-9.
2009: Ke Tang; Ganesan Pugalenthi; P N Suganthan; Christopher J Lanczycki; Saikat Chakrabarti
Prediction of functionally important sites from protein sequences using sparse kernel least squares classifiers.
Biochemical and biophysical research communications 2009;384(2):155-9.
2008: Christopher J Lanczycki; Saikat Chakrabarti
A tool for the prediction of functionally important sites in proteins using a library of functional templates.
Bioinformation 2008;2(7):279-83.
2007: Saikat Chakrabarti; Christopher J Lanczycki
Analysis and prediction of functionally important sites in proteins.
Protein science : a publication of the Protein Society 2007;16(1):4-13.
2007: Aron Marchler-Bauer; John B Anderson; Myra K Derbyshire; Carol DeWeese-Scott; Noreen R Gonzales; Marc Gwadz; Luning Hao; Siqian He; David I Hurwitz; John D Jackson; Zhaoxi Ke; Dmitri M Krylov; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Fu Lu; Shennan Lu; Gabriele H Marchler; Mikhail Mullokandov; James S Song; Narmada Thanki; Roxanne A Yamashita; Jodie Yin; Dachuan Zhang; Stephen H Bryant
CDD: a conserved domain database for interactive domain family analysis.
Nucleic acids research 2007;35(Database issue):D237-40.
2006: Saikat Chakrabarti; Christopher J Lanczycki; Anna R Panchenko; Teresa M Przytycka; Paul A Thiessen; Stephen H Bryant
State of the art: refinement of multiple sequence alignments.
BMC bioinformatics 2006;7():499.
2006: Saikat Chakrabarti; Christopher J Lanczycki; Anna R Panchenko; Teresa M Przytycka; Paul A Thiessen; Stephen H Bryant
Refining multiple sequence alignments with conserved core regions.
Nucleic acids research 2006;34(9):2598-606.
2005: Aron Marchler-Bauer; John B Anderson; Praveen F Cherukuri; Carol DeWeese-Scott; Lewis Y Geer; Marc Gwadz; Siqian He; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Fu Lu; Gabriele H Marchler; Mikhail Mullokandov; Benjamin A Shoemaker; Vahan Simonyan; James S Song; Paul A Thiessen; Roxanne A Yamashita; Jodie Yin; Dachuan Zhang; Stephen H Bryant
CDD: a Conserved Domain Database for protein classification.
Nucleic acids research 2005;33(Database issue):D192-6.
2003: Jie Chen; John B Anderson; Carol DeWeese-Scott; Natalie Fedorova Abrams; Lewis Y Geer; Siqian He; David I Hurwitz; John D Jackson; Aviva R Jacobs; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Thomas Madej; Aron Marchler-Bauer; Gabriele H Marchler; Raja Mazumder; Anastasia N Nikolskaya; B Sridhar Rao; Anna R Panchenko; Benjamin A Shoemaker; Vahan Simonyan; James S Song; Paul A Thiessen; Sona Vasudevan; Yanli Wang; Roxanne A Yamashita; Jodie Yin; Stephen H Bryant
MMDB: Entrez's 3D-structure database.
Nucleic acids research 2003;31(1):474-7.
2003: Aron Marchler-Bauer; John B Anderson; Carol DeWeese-Scott; Natalie Fedorova Abrams; Lewis Y Geer; Siqian He; David I Hurwitz; John D Jackson; Aviva R Jacobs; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Thomas Madej; Gabriele H Marchler; Raja Mazumder; Anastasia N Nikolskaya; Anna R Panchenko; B Sridhar Rao; Benjamin A Shoemaker; Vahan Simonyan; James S Song; Paul A Thiessen; Sona Vasudevan; Yanli Wang; Roxanne A Yamashita; Jodie Yin; Stephen H Bryant
CDD: a curated Entrez database of conserved domain alignments.
Nucleic acids research 2003;31(1):383-7.