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Kyongbum Lee

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TOP 3
Joanna Rucker; Julie Paul; Blaine A Pfeifer; Kyongbum Lee
Engineering E. coli for triglyceride accumulation through native and heterologous metabolic reactions.
Mona Yousofshahi; Kyongbum Lee; Michael Orshansky; Soha Hassoun
Probabilistic strain optimization under constraint uncertainty.
Ning Lai; Noo Li Jeon; James K Sims; Kyongbum Lee
Adipocyte induction of preadipocyte differentiation in a gradient chamber.

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All Publications

2013: Joanna Rucker; Julie Paul; Blaine A Pfeifer; Kyongbum Lee
Engineering E. coli for triglyceride accumulation through native and heterologous metabolic reactions.
Applied microbiology and biotechnology 2013;97(6):2753-9.
2013: Mona Yousofshahi; Kyongbum Lee; Michael Orshansky; Soha Hassoun
Probabilistic strain optimization under constraint uncertainty.
BMC systems biology 2013;7():29.
2012: Ning Lai; Noo Li Jeon; James K Sims; Kyongbum Lee
Adipocyte induction of preadipocyte differentiation in a gradient chamber.
Tissue engineering. Part C, Methods 2012;18(12):958-67.
2012: Kyle P Quinn; Evangelia Bellas; Nikolaos Fourligas; David L Kaplan; Kyongbum Lee; Irene Georgakoudi
Characterization of metabolic changes associated with the functional development of 3D engineered tissues by non-invasive, dynamic measurement of individual cell redox ratios.
Biomaterials 2012;33(21):5341-8.
2012: Ryan P Nolan; Kyongbum Lee
Dynamic model for CHO cell engineering.
Journal of biotechnology 2012;158(1-2):24-33.
2012: Gautham Vivek Sridharan; Michael Yi; Soha Hassoun; Kyongbum Lee
Metabolic flux-based modularity using shortest retroactive distances.
BMC systems biology 2012;6():155.
2011: Gautham Vivek Sridharan; Soha Hassoun; Kyongbum Lee
Identification of biochemical network modules based on shortest retroactive distances.
PLoS computational biology 2011;7(11):e1002262.
2011: Mona Yousofshahi; Kyongbum Lee; Soha Hassoun
Probabilistic pathway construction.
Metabolic engineering 2011;13(4):435-44.
2011: Vikas Yadav; Kyongbum Lee; Keiji Numuta; Bruce Panilaitis; Hai Shi; David L Kaplan
N-acetylglucosamine 6-phosphate deacetylase (nagA) is required for N-acetyl glucosamine assimilation in Gluconacetobacter xylinus.
PloS one 2011;6(6):e18099.
2011: Ryan P Nolan; Kyongbum Lee
Dynamic model of CHO cell metabolism.
Metabolic engineering 2011;13(1):108-24.
2010: Sejuti Sengupta; Sang-Hyug Park; Atur Patel; Julia Carn; Kyongbum Lee; David L Kaplan
Hypoxia and amino acid supplementation synergistically promote the osteogenesis of human mesenchymal stem cells on silk protein scaffolds.
Tissue engineering. Part A 2010;16(12):3623-34.
2010: Vikas Yadav; Bruce J Paniliatis; Hai Shi; Kyongbum Lee; Peggy Cebe; David L Kaplan
Novel in vivo-degradable cellulose-chitin copolymer from metabolically engineered Gluconacetobacter xylinus.
Applied and environmental microbiology 2010;76(18):6257-65.
2010: Sang-Hyug Park; Eun Seok Gil; Hyeon Joo Kim; Kyongbum Lee; David L Kaplan
Relationships between degradability of silk scaffolds and osteogenesis.
Biomaterials 2010;31(24):6162-72.
2010: Jennifer H Choi; Jeffrey M Gimble; Kyongbum Lee; Kacey Marra; J Peter Rubin; James J Yoo; Gordana Vunjak-Novakovic; David L Kaplan
Adipose tissue engineering for soft tissue regeneration.
Tissue engineering. Part B, Reviews 2010;16(4):413-26.
2010: Brett A Boghigian; Kyongbum Lee; Blaine A Pfeifer
Computational analysis of phenotypic space in heterologous polyketide biosynthesis--applications to Escherichia coli, Bacillus subtilis, and Saccharomyces cerevisiae.
Journal of theoretical biology 2010;262(2):197-207.
2010: Brett A Boghigian; Hai Shi; Kyongbum Lee; Blaine A Pfeifer
Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design.
BMC systems biology 2010;4():49.
2009: Yaguang Si; Hai Shi; Kyongbum Lee
Impact of perturbed pyruvate metabolism on adipocyte triglyceride accumulation.
Metabolic engineering 2009;11(6):382-90.
2009: Michael Lovett; Kyongbum Lee; Aurelie Edwards; David L Kaplan
Vascularization strategies for tissue engineering.
Tissue engineering. Part B, Reviews 2009;15(3):353-70.
2009: Ning Lai; Arul Jayaraman; Kyongbum Lee
Enhanced proliferation of human umbilical vein endothelial cells and differentiation of 3T3-L1 adipocytes in coculture.
Tissue engineering. Part A 2009;15(5):1053-61.
2009: Yaguang Si; Hai Shi; Kyongbum Lee
Metabolic flux analysis of mitochondrial uncoupling in 3T3-L1 adipocytes.
PloS one 2009;4(9):e7000.
2007: Fatih S Senocak; Yaguang Si; Colby Moya; William K Russell; David H Russell; Kyongbum Lee; Arul Jayaraman
Effect of uncoupling protein-1 expression on 3T3-L1 adipocyte gene expression.
FEBS letters 2007;581(30):5865-71.
2007: Jeongah Yoon; Yaguang Si; Ryan Nolan; Kyongbum Lee
Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection.
Bioinformatics (Oxford, England) 2007;23(18):2433-40.
2007: Yaguang Si; Jeongah Yoon; Kyongbum Lee
Flux profile and modularity analysis of time-dependent metabolic changes of de novo adipocyte formation.
American journal of physiology. Endocrinology and metabolism 2007;292(6):E1637-46.
2007: Yaguang Si; Santhosh Palani; Arul Jayaraman; Kyongbum Lee
Effects of forced uncoupling protein 1 expression in 3T3-L1 cells on mitochondrial function and lipid metabolism.
Journal of lipid research 2007;48(4):826-36.
2007: Leah C Abraham; J Fred Dice; Kyongbum Lee; David L Kaplan
Phagocytosis and remodeling of collagen matrices.
Experimental cell research 2007;313(5):1045-55.
2007: Jeongah Yoon; Kyongbum Lee
Metabolic flux profiling of reaction modules in liver drug transformation.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2007;():193-204.
2007: Leah C Abraham; J Fred Dice; Patrick Finn; Nicholas T Mesires; Kyongbum Lee; David L Kaplan
Extracellular matrix remodeling--methods to quantify cell-matrix interactions.
Biomaterials 2007;28(2):151-61.
2006: Jeongah Yoon; Anselm Blumer; Kyongbum Lee
An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality.
Bioinformatics (Oxford, England) 2006;22(24):3106-8.
2006: Ryan P Nolan; Andrew P Fenley; Kyongbum Lee
Identification of distributed metabolic objectives in the hypermetabolic liver by flux and energy balance analysis.
Metabolic engineering 2006;8(1):30-45.
2005: Arul Jayaraman; Kristina A Roberts; Jeongah Yoon; David M Yarmush; Xunbao Duan; Kyongbum Lee; Martin L Yarmush
Identification of neutrophil gelatinase-associated lipocalin (NGAL) as a discriminatory marker of the hepatocyte-secreted protein response to IL-1beta: a proteomic analysis.
Biotechnology and bioengineering 2005;91(4):502-15.
2004: Kyongbum Lee; Daehee Hwang; Tadaaki Yokoyama; George Stephanopoulos; Gregory Stephanopoulos; Martin L Yarmush
Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data.
Bioinformatics (Oxford, England) 2004;20(6):959-69.
2003: Kyongbum Lee; François Berthiaume; Gregory Stephanopoulos; Martin L Yarmush
Induction of a hypermetabolic state in cultured hepatocytes by glucagon and H2O2.
Metabolic engineering 2003;5(4):221-9.
2003: Kyongbum Lee; François Berthiaume; Gregory Stephanopoulos; Martin L Yarmush
Profiling of dynamic changes in hypermetabolic livers.
Biotechnology and bioengineering 2003;83(4):400-15.
2003: Christina Chan; François Berthiaume; Kyongbum Lee; Martin L Yarmush
Metabolic flux analysis of cultured hepatocytes exposed to plasma.
Biotechnology and bioengineering 2003;81(1):33-49.
2003: Christina Chan; François Berthiaume; Kyongbum Lee; Martin L Yarmush
Metabolic flux analysis of hepatocyte function in hormone- and amino acid-supplemented plasma.
Metabolic engineering 2003;5(1):1-15.
2001: K Arai; Kyongbum Lee; François Berthiaume; Ronald G Tompkins; Martin L Yarmush
Intrahepatic amino acid and glucose metabolism in a D-galactosamine-induced rat liver failure model.
Hepatology (Baltimore, Md.) 2001;34(2):360-71.
2000: Kyongbum Lee; François Berthiaume; Gregory Stephanopoulos; David M Yarmush; Martin L Yarmush
Metabolic flux analysis of postburn hepatic hypermetabolism.
Metabolic engineering 2000;2(4):312-27.
1999: Kyongbum Lee; François Berthiaume; Gregory Stephanopoulos; Martin L Yarmush
Metabolic flux analysis: a powerful tool for monitoring tissue function.
Tissue engineering 1999;5(4):347-68.