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Anne Baranger

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Publications

TOP 3
Amin Haghighat Jahromi; Kali A Miller; Lien Nguyen; Anne M Baranger; Yuan Fu; Steven C Zimmerman
A Novel CUG(exp)·MBNL1 Inhibitor with Therapeutic Potential for Myotonic Dystrophy Type 1.
Chun-Ho Wong; Anne M Baranger; Yen-Jun Ho; Alex M H Lucas; Stacie L Richardson; Tiziano Tuccinardi; Steven C Zimmerman
Investigating the binding mode of an inhibitor of the MBNL1·RNA complex in myotonic dystrophy type 1 (DM1) leads to the unexpected discovery of a DNA-selective binder.
Douglas M Warui; Anne M Baranger
Identification of small molecule inhibitors of the HIV-1 nucleocapsid-stem-loop 3 RNA complex.

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All Publications

2013: Amin Haghighat Jahromi; Kali A Miller; Lien Nguyen; Anne M Baranger; Yuan Fu; Steven C Zimmerman
A Novel CUG(exp)·MBNL1 Inhibitor with Therapeutic Potential for Myotonic Dystrophy Type 1.
ACS chemical biology 2013;8(5):1037-43.
2012: Chun-Ho Wong; Anne M Baranger; Yen-Jun Ho; Alex M H Lucas; Stacie L Richardson; Tiziano Tuccinardi; Steven C Zimmerman
Investigating the binding mode of an inhibitor of the MBNL1·RNA complex in myotonic dystrophy type 1 (DM1) leads to the unexpected discovery of a DNA-selective binder.
Chembiochem : a European journal of chemical biology 2012;13(17):2505-9.
2012: Douglas M Warui; Anne M Baranger
Identification of small molecule inhibitors of the HIV-1 nucleocapsid-stem-loop 3 RNA complex.
Journal of medicinal chemistry 2012;55(9):4132-41.
2011: Chun-Ho Wong; Anne M Baranger; Yuan Fu; Sreenivasa Rao Ramisetty; Steven C Zimmerman
Selective inhibition of MBNL1-CCUG interaction by small molecules toward potential therapeutic agents for myotonic dystrophy type 2 (DM2).
Nucleic acids research 2011;39(20):8881-90.
2011: Bethany L Kormos; Susan N Pieniazek; David L Beveridge; Anne M Baranger
U1A protein-stem loop 2 RNA recognition: prediction of structural differences from protein mutations.
Biopolymers 2011;95(9):591-606.
2011: Divina Anunciado; Apratim Dhar; Martin Gruebele; Anne M Baranger
Multistep kinetics of the U1A-SL2 RNA complex dissociation.
Journal of molecular biology 2011;408(5):896-908.
2011: Yulia Benitex; Anne M Baranger
Control of the stability of a protein-RNA complex by the position of fluorine in a base analogue.
Journal of the American Chemical Society 2011;133(11):3687-9.
2008: Ying Zhao; Joseph L Knee; Anne M Baranger
Characterization of two adenosine analogs as fluorescence probes in RNA.
Bioorganic chemistry 2008;36(6):271-7.
2008: Divina Anunciado; Michael Agumeh; Bethany L Kormos; David L Beveridge; Joseph L Knee; Anne M Baranger
Characterization of the dynamics of an essential helix in the U1A protein by time-resolved fluorescence measurements.
The journal of physical chemistry. B 2008;112(19):6122-30.
2007: Zhaohui Yan; Sreenivasa Rao Ramisetty; Philip H Bolton; Anne M Baranger
Selective recognition of RNA helices containing dangling ends by a quinoline derivative.
Chembiochem : a European journal of chemical biology 2007;8(14):1658-61.
2007: Bethany L Kormos; Yulia Benitex; Anne M Baranger; David L Beveridge
Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy model.
Journal of molecular biology 2007;371(5):1405-19.
2007: Zhaohui Yan; Shweta Sikri; David L Beveridge; Anne M Baranger
Identification of an aminoacridine derivative that binds to RNA tetraloops.
Journal of medicinal chemistry 2007;50(17):4096-104.
2007: Bethany L Kormos; Anne M Baranger; David L Beveridge
A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations.
Journal of structural biology 2007;157(3):500-13.
2007: Yulia Benitex; Anne M Baranger
Recognition of essential purines by the U1A protein.
BMC biochemistry 2007;8():22.
2006: Bethany L Kormos; Anne M Baranger; David L Beveridge
Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex.
Journal of the American Chemical Society 2006;128(28):8992-3.
2006: Ying Zhao; Bethany L Kormos; David L Beveridge; Anne M Baranger
Molecular dynamics simulation studies of a protein-RNA complex with a selectively modified binding interface.
Biopolymers 2006;81(4):256-69.
2004: Zhaohui Yan; Anne M Baranger
Binding of an aminoacridine derivative to a GAAA RNA tetraloop.
Bioorganic & medicinal chemistry letters 2004;14(23):5889-93.
2003: Ying Zhao; Anne M Baranger
Design of an adenosine analogue that selectively improves the affinity of a mutant U1A protein for RNA.
Journal of the American Chemical Society 2003;125(9):2480-8.
2002: Felicia Pitici; David L Beveridge; Anne M Baranger
Molecular dynamics simulation studies of induced fit and conformational capture in U1A-RNA binding: do molecular substates code for specificity?
Biopolymers 2002;65(6):424-35.
2002: Jacob B Tuite; Jerome C Shiels; Anne M Baranger
Substitution of an essential adenine in the U1A-RNA complex with a non-polar isostere.
Nucleic acids research 2002;30(23):5269-75.
2002: Alicia Y Gayle; Anne M Baranger
Inhibition of the U1A-RNA complex by an aminoacridine derivative.
Bioorganic & medicinal chemistry letters 2002;12(20):2839-42.
2002: Jerome C Shiels; Jacob B Tuite; Scott J Nolan; Anne M Baranger
Investigation of a conserved stacking interaction in target site recognition by the U1A protein.
Nucleic acids research 2002;30(2):550-8.
2001: Jerome C Shiels; B Jerkovic; Anne M Baranger; Philip H Bolton
RNA-DNA hybrids containing damaged DNA are substrates for RNase H.
Bioorganic & medicinal chemistry letters 2001;11(19):2623-6.
2001: D M Blakaj; Kevin J McConnell; David L Beveridge; Anne M Baranger
Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex.
Journal of the American Chemical Society 2001;123(11):2548-51.
1998: Anne M Baranger
Accessory factor-bZIP-DNA interactions.
Current opinion in chemical biology 1998;2(1):18-23.