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Valérie Barbe

Research Profile

Genes & Molecular Sequences

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Publications

TOP 3
Jérémy Andres; Florence Arsène-Ploetze; Valérie Barbe; Céline Brochier-Armanet; Jessica Cleiss-Arnold; Jean-Yves Coppée; Marie-Agnès Dillies; Lucie Geist; Aurélie Joublin; Sandrine Koechler; Florent Lassalle; Marie Marchal; Claudine Médigue; Daniel Muller; Xavier Nesme; Frédéric PLEWNIAK; Caroline Proux; Martha Helena Ramírez-Bahena; Joanne M Santini; Chantal Schenowitz; Odile Sismeiro; David Vallenet; Philippe N Bertin
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.
Isabelle Rosinski-Chupin; Christophe Rusniok; Elisabeth Sauvage; Laurence Ma; Barbara Mairey; Sophie Mangenot; Valérie Barbe; Christiane Bouchier; Violette Da Cunha; Philippe Glaser
Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage.
Boyang Ji; Sabine Leroy; Bernard Ollivier; Didier Alazard; Amira Amrani; Valérie Barbe; Philippe Bertin; Alain Dolla; Marie-Laure Fardeau; Gregory Gimenez; Zoé Rouy; Emmanuel Talla; Benoît Vacherie; Nathalie Pradel
Complete Genome Sequence of the Piezophilic, Mesophilic, Sulfate-Reducing Bacterium Desulfovibrio hydrothermalis AM13(T.).

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All Publications

2013: Jérémy Andres; Florence Arsène-Ploetze; Valérie Barbe; Céline Brochier-Armanet; Jessica Cleiss-Arnold; Jean-Yves Coppée; Marie-Agnès Dillies; Lucie Geist; Aurélie Joublin; Sandrine Koechler; Florent Lassalle; Marie Marchal; Claudine Médigue; Daniel Muller; Xavier Nesme; Frédéric PLEWNIAK; Caroline Proux; Martha Helena Ramírez-Bahena; Joanne M Santini; Chantal Schenowitz; Odile Sismeiro; David Vallenet; Philippe N Bertin
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.
Genome biology and evolution 2013;5(5):934-53.
2013: Isabelle Rosinski-Chupin; Christophe Rusniok; Elisabeth Sauvage; Laurence Ma; Barbara Mairey; Sophie Mangenot; Valérie Barbe; Christiane Bouchier; Violette Da Cunha; Philippe Glaser
Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage.
BMC genomics 2013;14(1):252.
2013: Boyang Ji; Sabine Leroy; Bernard Ollivier; Didier Alazard; Amira Amrani; Valérie Barbe; Philippe Bertin; Alain Dolla; Marie-Laure Fardeau; Gregory Gimenez; Zoé Rouy; Emmanuel Talla; Benoît Vacherie; Nathalie Pradel
Complete Genome Sequence of the Piezophilic, Mesophilic, Sulfate-Reducing Bacterium Desulfovibrio hydrothermalis AM13(T.).
Genome announcements 2013;1(1):.
2013: Oulfat Amin; Valérie Barbe; Philippe N Bertin; Marie-Laure Fardeau; Agnès Hirschler-Réa; Claudine Médigue; Bernard Ollivier; Benoit Vacherie; Odile Valette; Alain Dolla
Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5(T).
Genome announcements 2013;1(1):.
2013: Stéphanie Bolot; Sébastien Carrere; Endrick Guy; Matthieu Arlat; Valérie Barbe; Laurent D Noël
Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5.
Genome announcements 2013;1(1):.
2013: Nathalie Pradel; Emmanuel Talla; Christian Tamburini; Valérie Barbe; Philippe Bertin; Yann Denis; Patrick Fourquet; Marc Garel; Grégory Gimenez; Boyang Ji; Régine Lebrun; Patricia Lenoble; Bernard Ollivier; Matthieu Pophillat; Alain Dolla
The first genomic and proteomic characterization of a deep-sea sulfate reducer: insights into the piezophilic lifestyle of Desulfovibrio piezophilus.
PloS one 2013;8(1):e55130.
2012: Emmanuel Cornillot; Amina Dassouli; Françoise Debierre-Grockiego; Stéphane Delbecq; Aurelie Duclos; André Gorenflot; Kamel Hadj-Kaddour; Peter J Krause; Karina Moubri-Ménage; Benjamin Noel; Sylvie Randazzo; Vincent Ranwez; Theo P Schetters; Ralph T Schwarz; Hosam Shams-Eldin; Sahar Usmani-Brown; Benoît Vacherie; Christian P Vivarès; Patrick Wincker; Vincent Berry; Virginie Brès; Frédéric Bringaud; Bernard Carcy; Yoann AUGAGNEUR; Valérie Barbe; Choukri Ben Mamoun
Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti.
Nucleic acids research 2012;40(18):9102-14.
2012: Philippe Normand; Imen Nouioui; Petar Pujic; Benoit Vacherie; Jérôme Gury; Claudine Médigue; Ines Abbassi-Ghozzi; Valérie Barbe; Lorenzo Brusetti; Alexandra Calteau; Bessem Chouaia; Elena Crotti; Daniele Daffonchio; Imen Essoussi; Faten Ghodhbane-Gtari; Maher Gtari
Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces.
Journal of bacteriology 2012;194(17):4773-4.
2012: Erika Acosta-Cruz; Valérie Barbe; Zoé Rouy; María Valdés; Florence Wisniewski-Dyé; Patrick Mavingui
Insights into the 1.59-Mbp largest plasmid of Azospirillum brasilense CBG497.
Archives of microbiology 2012;194(9):725-36.
2012: Regis Grimaud; Béatrice Lauga; Sophie Mangenot; Valérie Barbe; Patricia Bonin; Christine Cagnon; Stephane Cruveiller; Robert Duran; Jean-François Ghiglione; Arturo Rodriguez-Blanco; Emmanuel Talla; Pierre-Joseph Vaysse; Long-Fei Wu; Valérie Michotey
Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds.
Journal of bacteriology 2012;194(13):3539-40.
2012: Bessem Chouaia; Elena Crotti; Daniele Daffonchio; Imen Essoussi; Faten Ghodhbane-Gtari; Maher Gtari; Jerome Gury; Claudine Médigue; Imen Nouioui; Petar Pujic; Imed Sbissi; Benoit Vacherie; Valérie Barbe; Lorenzo Brusetti; Philippe Normand
Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium.
Journal of bacteriology 2012;194(10):2752-3.
2012: Anthony Zoropogui; Valérie Barbe; Blaine Beaman; LoVelle Beaman; Patrick Boiron; Céline Colinon; Benoit Cournoyer; Amélie Deredjian; arnault Graindorge; Sophie Mangenot; Sylvie Nazaret; Manuelle Neto; Philippe Normand; Stéphanie Petit; Petar Pujic; Yves Richard; David Roche; Veronica Rodríguez-Nava; David Vallenet; Didier Blaha
Genome sequence of the human- and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2.
Journal of bacteriology 2012;194(8):2098-9.
2012: Patrick Mavingui; Guillaume Minard; Vincent Raquin; Zoé Rouy; Florence-Hélène Tran; Van Tran-Van; Claire Valiente Moro; Denis Voronin; Florence Wisniewski-Dyé; Valérie Barbe; Patricia Bustos; Luis Lozano; Víctor González
Whole-genome sequence of Wolbachia strain wAlbB, an endosymbiont of tiger mosquito vector Aedes albopictus.
Journal of bacteriology 2012;194(7):1840.
2012: Isabelle Pieretti; Stéphane Poussier; Philippe C Rott; Monique Royer; Béatrice Segurens; Boris Szurek; Valérie Verdier; Matthieu Arlat; Valérie Barbe; Sébastien Carrere; Arnaud Couloux; Armelle Darrasse; Dean W Gabriel; Jérôme Gouzy; Marie-Agnès Jacques; Ralf Koebnik; Emmanuelle Lauber; C Manceau; Sophie Mangenot; Stéphane Cociancich
Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels.
BMC genomics 2012;13():658.
2012: Virginie Dupuy; Lucía Manso-Silván; François Poumarat; Pascal Sirand-Pugnet; Patricia Thebault; Valérie Barbe; Alain Blanchard; Marc Breton; Christine Citti; Emilie Dordet-Frisoni; Francois Thiaucourt
Evolutionary history of contagious bovine pleuropneumonia using next generation sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony".
PloS one 2012;7(10):e46821.
2011: Zengcui Zhang; Valérie Barbe; Harry Belcram; Mathieu Charles; Arnaud Couloux; Justin D Faris; Bikram S Gill; Piotr Gornicki; Cécile Huneau; Jérémy Just; Ghislaine Magdelenat; Jack B Rasmussen; Sylvie Samain; Boulos Chalhoub
Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(46):18737-42.
2011: Ange Pujol; Gwenola Simon; David Vallenet; Valérie Barbe; Emmanuelle H Crost; Ana Gomez; Michel Fons
Characterization and distribution of the gene cluster encoding RumC, an anti-Clostridium perfringens bacteriocin produced in the gut.
FEMS microbiology ecology 2011;78(2):405-15.
2011: Marie Touchon; Benoit Vacherie; Valentin Loux; Eduardo P C Rocha; Valérie Barbe; Paul Barbier; Jean-François Bernardet; Eric Duchaud
Complete genome sequence of the fish pathogen Flavobacterium branchiophilum.
Applied and environmental microbiology 2011;77(21):7656-62.
2011: Valérie Barbe; M Bouzon; Sophie Mangenot; Philippe Marlière; Julie Poulain; Béatrice Segurens; David Vallenet; Bernard Badet; Jean Weissenbach
Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites.
Journal of bacteriology 2011;193(18):5055-6.
2011: Stéphane Vuilleumier; Muhammad Farhan Ul Haque; Valérie Barbe; Christelle Gruffaz; Aurélie Lajus; Ghislaine Magdelenat; Claudine Médigue; Emilie E L Muller; Thierry Nadalig; Sandro Roselli; Françoise Bringel
Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.
Journal of bacteriology 2011;193(18):5035-6.
2011: Cindy Fevre; Virginie Passet; Alexis Deletoile; Valérie Barbe; Lionel Frangeul; Ana S Almeida; Philippe Sansonetti; Régis Tournebize; Sylvain Brisse
PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma.
PLoS neglected tropical diseases 2011;5(5):e1052.
2011: Laura Gomez-Valero; Sophie Jarraud; Claudine Medigue; Zoé Rouy; Christophe Rusniok; Benoit Vacherie; Valérie Barbe; Jerome Etienne; Carmen Buchrieser
Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes.
BMC genomics 2011;12():536.
2011: Benoît Remenant; David Vallenet; Caitilyn Allen; Valérie Barbe; Gilles Cellier; Jean-Charles de Cambiaire; Mark Fegan; Jonathan M Jacobs; Aurélie Lajus; Sophie Mangenot; Claudine Medigue; Philippe Prior
Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles.
PloS one 2011;6(9):e24356.
2011: A Darracq; P Lenoble; L Maréchal-Drouard; Sophie Oztas; Pierre Saumitou-Laprade; Valérie Barbe; Vincent Castric; A Courseaux; B Vacherie; J S Varré; P Touzet
Structural and content diversity of mitochondrial genome in beet: a comparative genomic analysis.
Genome biology and evolution 2011;3():723-36.
2010: Fabrice Touzain; Erick Denamur; Claudine Médigue; Valérie Barbe; Meriem El-Karoui; Marie-Agnès Petit
Small variable segments constitute a major type of diversity of bacterial genomes at the species level.
Genome biology 2010;11(4):R45.
2009: Chantal Peigne; Philippe Bidet; Farah Mahjoub-Messai; Céline Plainvert; Valérie Barbe; Claudine Médigue; Eric Frapy; Xavier Nassif; Erick Denamur; Edouard Bingen; Stéphane Bonacorsi
The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model.
Infection and immunity 2009;77(6):2272-84.
2007: Céline Plainvert; Philippe Bidet; Chantal Peigne; Valérie Barbe; Claudine Médigue; Erick Denamur; Edouard Bingen; Stéphane Bonacorsi
A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7.
Journal of bacteriology 2007;189(23):8528-36.
2007: Pascal Sirand-Pugnet; carole lartigue; Marc Marenda; Daniel Jacob; Aurélien Barré; Valérie Barbe; Chantal Schenowitz; Sophie Mangenot; Arnaud Couloux; Beatrice Segurens; Antoine de Daruvar; Alain Blanchard; Christine Citti
Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome.
PLoS genetics 2007;3(5):e75.
2006: Frédéric Choulet; Bertrand Aigle; Alexandre Gallois; Sophie Mangenot; Claude Gerbaud; Chantal Truong; François-Xavier Francou; Céline Fourrier; Michel Guérineau; Bernard Decaris; Valérie Barbe; Jean-Luc Pernodet; Pierre Leblond
Evolution of the terminal regions of the Streptomyces linear chromosome.
Molecular biology and evolution 2006;23(12):2361-9.
2006: Frédéric Choulet; Alexandre Gallois; Bertrand Aigle; Sophie Mangenot; Claude Gerbaud; Chantal Truong; François-Xavier Francou; frederic borges; Céline Fourrier; Michel Guérineau; Bernard Decaris; Valérie Barbe; Jean-Luc Pernodet; Pierre Leblond
Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens.
Journal of bacteriology 2006;188(18):6599-610.
2006: Maarten van de Guchte; S Penaud; Christine Grimaldi; Valérie Barbe; K Bryson; Pierre Nicolas; Catherine Robert; Sophie Oztas; Sophie Mangenot; Arnaud Couloux; Valentin Loux; Rozenn Dervyn; Robert Bossy; Alexander Bolotin; J-M Batto; T Walunas; Jean-François Gibrat; Philippe Bessières; Jean Weissenbach; S Dusko Ehrlich; Emmanuelle Maguin
The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(24):9274-9.
2006: Marc Marenda; Valérie Barbe; Géraldine Gourgues; Sophie Mangenot; Evelyne Sagne; Christine Citti
A new integrative conjugative element occurs in Mycoplasma agalactiae as chromosomal and free circular forms.
Journal of bacteriology 2006;188(11):4137-41.
2006: nicolas vodovar; David Vallenet; Stéphane Cruveiller; Zoé Rouy; Valérie Barbe; Carlos Acosta; Laurence Cattolico; Claire Jubin; Aurélie Lajus; Béatrice Segurens; Benoît Vacherie; Patrick Wincker; Jean Weissenbach; Bruno Lemaitre; Claudine Médigue; Frédéric Boccard
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.
Nature biotechnology 2006;24(6):673-9.
2006: Pierre-Edouard Fournier; David Vallenet; Valérie Barbe; Stéphane Audic; Hiroyuki Ogata; Laurent Poirel; Hervé Richet; Catherine Robert; Sophie Mangenot; Chantal Abergel; patrice nordmann; Jean Weissenbach; Didier Raoult; Jean-Michel Claverie
Comparative genomics of multidrug resistance in Acinetobacter baumannii.
PLoS genetics 2006;2(1):e7.
2006: David Vallenet; Laurent Labarre; Zoé Rouy; Valérie Barbe; Stéphanie Bocs; Stéphane Cruveiller; Aurélie Lajus; Géraldine Pascal; Claude Scarpelli; Claudine Médigue
MaGe: a microbial genome annotation system supported by synteny results.
Nucleic acids research 2006;34(1):53-65.
2005: Claudine Médigue; Evelyne Krin; Géraldine Pascal; Valérie Barbe; Andreas Bernsel; Philippe N Bertin; Frankie Cheung; Stéphane Cruveiller; Salvino D'Amico; Angela Duilio; Gang Fang; Georges Feller; Christine Ho; Sophie Mangenot; Gennaro Marino; Johan Nilsson; Ermenegilda Parrilli; Eduardo P C Rocha; Zoé Rouy; Agnieszka Sekowska; Maria Luisa Tutino; David Vallenet; Gunnar von Heijne; Antoine Danchin
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.
Genome research 2005;15(10):1325-35.
2004: Valérie Barbe; David Vallenet; Nuria Fonknechten; Annett Kreimeyer; Sophie Oztas; Laurent Labarre; Stéphane Cruveiller; Catherine Robert; Simone Duprat; Patrick Wincker; L Nicholas Ornston; Jean Weissenbach; Philippe Marlière; Georges N Cohen; Claudine Médigue
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.
Nucleic acids research 2004;32(19):5766-79.
2003: Alexis Dufresne; Marcel Salanoubat; Frédéric Partensky; François Artiguenave; Ilka M Axmann; Valérie Barbe; Simone Duprat; Michael Galperin; Eugene V Koonin; Florence Le Gall; Kira S Makarova; Martin Ostrowski; Sophie Oztas; Catherine Robert; Igor Rogozin; David J Scanlan; Nicole Tandeau de Marsac; Jean Weissenbach; Patrick Wincker; Yuri I Wolf; Wolfgang Hess
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(17):10020-5.
2003: Georges N Cohen; Valérie Barbe; Didier Flament; Michael Galperin; Roland Heilig; Odile Lecompte; Olivier Poch; Daniel Prieur; Joël Quérellou; Raymond Ripp; Jean-Claude Thierry; John van der Oost; Jean Weissenbach; Yvan Zivanovic; Patrick Forterre
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.
Molecular microbiology 2003;47(6):1495-512.
2002: Corinne Chureau; Marine Prissette; Agnès Bourdet; Valérie Barbe; Laurence Cattolico; Louis Jones; André Eggen; Philip Avner; Laurent Duret
Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.
Genome research 2002;12(6):894-908.
2001: M D Katinka; Simone Duprat; Emmanuel Cornillot; Guy Méténier; Fabienne Thomarat; Gérard Prensier; Valérie Barbe; Eric Peyretaillade; Phillipe Brottier; Patrick Wincker; Frédéric Delbac; Hicham El Alaoui; Pierre Peyret; William Saurin; Manolo Gouy; Jean Weissenbach; Christian P Vivarès
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.
Nature 2001;414(6862):450-3.
2001: Hiroyuki Ogata; Stéphane Audic; P Renesto-Audiffren; Pierre-Edouard Fournier; Valérie Barbe; D Samson; V Roux; P Cossart; Jean Weissenbach; Jean-Michel Claverie; D Raoult
Mechanisms of evolution in Rickettsia conorii and R. prowazekii.
Science (New York, N.Y.) 2001;293(5537):2093-8.
2001: Isabelle Chambaud; Roland Heilig; Stéphane Ferris; Valérie Barbe; D Samson; F Galisson; Ivan Moszer; K Dybvig; Henri Wróblewski; Alain Viari; Eduardo P C Rocha; Alain Blanchard
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis.
Nucleic acids research 2001;29(10):2145-53.
2001: Pierre Peyret; M D Katinka; Simone Duprat; Francis Duffieux; Valérie Barbe; M Barbazanges; Jean Weissenbach; William Saurin; Christian P Vivarès
Sequence and analysis of chromosome I of the amitochondriate intracellular parasite Encephalitozoon cuniculi (Microspora).
Genome research 2001;11(2):198-207.
2000: Hiroyuki Ogata; Stéphane Audic; Valérie Barbe; François Artiguenave; Pierre-Edouard Fournier; D Raoult; Jean-Michel Claverie
Selfish DNA in protein-coding genes of Rickettsia.
Science (New York, N.Y.) 2000;290(5490):347-50.
1999: Jamilé Hazan; Nuria Fonknechten; D Mavel; Caroline Paternotte; D Samson; François Artiguenave; Claire-Sophie Davoine; Corinne Cruaud; Alexandra Dürr; Patrick Wincker; Phillipe Brottier; Laurence Cattolico; Valérie Barbe; Jean-Marc Burgunder; Jean-F Prud'homme; Alexis Brice; Bertrand Fontaine; B Heilig; Jean Weissenbach
Spastin, a new AAA protein, is altered in the most frequent form of autosomal dominant spastic paraplegia.
Nature genetics 1999;23(3):296-303.