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Thomas Lengauer
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19
Beerenwinkel, Niko
18
Rahnenführer, Jörg
17
Kaiser, Rolf
15
Albrecht, Mario
14
Rarey, Matthias
13
Domingues, Francisco
12
Zimmer, Ralf
11
Sing, Tobias
10
Däumer, Martin
8
Hoffmann, Daniel
8
Selbig, Joachim
8
Zeuzem, Stefan
8
Zien, Alexander
7
Welsch, Christoph
7
Sander, Oliver
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All Publications
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2009: Sierra Saleta; Lengauer Thomas; Kaiser Rolf
[Resistance screening]
MMW Fortschritte der Medizin 2009;151(18):72, 74-5.
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2009: Altmann André; Däumer Martin; Beerenwinkel Niko; Peres Yardena; Schülter Eugen; Büch Joachim; Rhee Soo-Yon; Sönnerborg Anders; Fessel W Jeffrey; Shafer Robert W; Zazzi Maurizio; Kaiser Rolf; Lengauer Thomas
Predicting the response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database.
The Journal of infectious diseases 2009;199(7):999-1006.
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2009: Hartmann Christoph; Antes Iris; Lengauer Thomas
Docking and scoring with alternative side-chain conformations.
Proteins 2009;74(3):712-26.
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2009: Trignetti Maria; Sing Tobias; Svicher Valentina; Santoro Maria Mercedes; Forbici Federica; D'arrigo Roberta; Bellocchi Maria Concetta; Santoro Mario; Marconi Patrizia; Zaccarelli Mauro; Trotta Maria Paola; Bellagamba Rita; Narciso Pasquale; Antinori Andrea; Lengauer Thomas; Perno Carlo Federico; Ceccherini-Silberstein Francesca
Dynamics of NRTI resistance mutations during therapy interruption.
AIDS research and human retroviruses 2009;25(1):57-64.
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2009: Mihm Ulrike; Ackermann Oliver; Welsch Christoph; Herrmann Eva; Hofmann Wolf Peter; Grigorian Natalia; Welker Martin Walter; Lengauer Thomas; Zeuzem Stefan; Sarrazin Christoph
Clinical relevance of the 2'-5'-oligoadenylate synthetase/RNase L system for treatment response in chronic hepatitis C.
Journal of hepatology 2009;50(1):49-58.
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2009: Bozek Katarzyna; Thielen Alexander; Sierra Saleta; Kaiser Rolf; Lengauer Thomas
V3 loop sequence space analysis suggests different evolutionary patterns of CCR5- and CXCR4-tropic HIV.
PloS one 2009;4(10):e7387.
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2009: Altmann André; Sing Tobias; Vermeiren Hans; Winters Bart; Van Craenenbroeck Elke; Van der Borght Koen; Rhee Soo-Yon; Shafer Robert W; Schülter Eugen; Kaiser Rolf; Peres Yardena; Sönnerborg Anders; Fessel W Jeffrey; Incardona Francesca; Zazzi Maurizio; Bacheler Lee; Van Vlijmen Herman; Lengauer Thomas
Advantages of predicted phenotypes and statistical learning models in inferring virological response to antiretroviral therapy from HIV genotype.
Antiviral therapy 2009;14(2):273-83.
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2008: Emig Dorothea; Cline Melissa S; Lengauer Thomas; Albrecht Mario
Integrating expression data with domain interaction networks.
Bioinformatics (Oxford, England) 2008;24(21):2546-8.
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2008: Bogojeska Jasmina; Alexa Adrian; Altmann André; Lengauer Thomas; Rahnenführer Jörg
Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores.
Bioinformatics (Oxford, England) 2008;24(20):2391-2.
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2008: Schelhorn Sven-Eric; Lengauer Thomas; Albrecht Mario
An integrative approach for predicting interactions of protein regions.
Bioinformatics (Oxford, England) 2008;24(16):i35-41.
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2008: Bock Christoph; Walter Jörn; Paulsen Martina; Lengauer Thomas
Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping.
Nucleic acids research 2008;36(10):e55.
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2008: Assenov Yassen; Ramírez Fidel; Schelhorn Sven-Eric; Lengauer Thomas; Albrecht Mario
Computing topological parameters of biological networks.
Bioinformatics (Oxford, England) 2008;24(2):282-4.
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2008: Altmann André; Rosen-Zvi Michal; Prosperi Mattia; Aharoni Ehud; Neuvirth Hani; Schülter Eugen; Büch Joachim; Struck Daniel; Peres Yardena; Incardona Francesca; Sönnerborg Anders; Kaiser Rolf; Zazzi Maurizio; Lengauer Thomas
Comparison of classifier fusion methods for predicting response to anti HIV-1 therapy.
PloS one 2008;3(10):e3470.
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2008: Weinhold Nils; Sander Oliver; Domingues Francisco S; Lengauer Thomas; Sommer Ingolf
Local function conservation in sequence and structure space.
PLoS computational biology 2008;4(7):e1000105.
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2008: Bogojeska Jasmina; Lengauer Thomas; Rahnenführer Jörg
Stability analysis of mixtures of mutagenetic trees.
BMC bioinformatics 2008;9():165.
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2007: Sommer Ingolf; Müller Oliver; Domingues Francisco S; Sander Oliver; Weickert Joachim; Lengauer Thomas
Moment invariants as shape recognition technique for comparing protein binding sites.
Bioinformatics (Oxford, England) 2007;23(23):3139-46.
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2007: Domingues Francisco S; Rahnenführer Jörg; Lengauer Thomas
Conformational analysis of alternative protein structures.
Bioinformatics (Oxford, England) 2007;23(23):3131-8.
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2007: Kupfer Bernd; Sing Tobias; Schüffler Peter; Hall Rabea; Kurz Ralf; McKeown Astrid; Schneweis Karl-Eduard; Eberl Wolfgang; Oldenburg Johannes; Brackmann Hans H; Rockstroh Jürgen K; Spengler Ulrich; Däumer Martin P; Kaiser Rolf; Lengauer Thomas; Matz Bertfried
Fifteen years of env C2V3C3 evolution in six individuals infected clonally with human immunodeficiency virus type 1.
Journal of medical virology 2007;79(11):1629-39.
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2007: Sierra S; Kaiser R; Thielen A; Lengauer T
Genotypic coreceptor analysis.
European journal of medical research 2007;12(9):453-62.
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2007: Ahlenstiel Golo; Roomp Kirsten; Däumer Martin; Nattermann Jacob; Vogel Martin; Rockstroh Jürgen K; Beerenwinkel Niko; Kaiser Rolf; Nischalke Hans-Dieter; Sauerbruch Tilman; Lengauer Thomas; Spengler Ulrich;
Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level.
Clinical and vaccine immunology : CVI 2007;14(10):1266-73.
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2007: Ceccherini-Silberstein Francesca; Svicher Valentina; Sing Tobias; Artese Anna; Santoro Maria Mercedes; Forbici Federica; Bertoli Ada; Alcaro Stefano; Palamara Guido; d'Arminio Monforte Antonella; Balzarini Jan; Antinori Andrea; Lengauer Thomas; Perno Carlo Federico
Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of resistance to nonnucleoside inhibitors.
Journal of virology 2007;81(20):11507-19.
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2007: Ketter Ralf; Urbschat Steffi; Henn Wolfram; Feiden Wolfgang; Beerenwinkel Niko; Lengauer Thomas; Steudel Wolf-Ingo; Zang Klaus D; Rahnenführer Jörg
Application of oncogenetic trees mixtures as a biostatistical model of the clonal cytogenetic evolution of meningiomas.
International journal of cancer. Journal international du cancer 2007;121(7):1473-80.
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2007: Welsch Christoph; Albrecht Mario; Maydt Jochen; Herrmann Eva; Welker Martin Walter; Sarrazin Christoph; Scheidig Axel; Lengauer Thomas; Zeuzem Stefan
Structural and functional comparison of the non-structural protein 4B in flaviviridae.
Journal of molecular graphics & modelling 2007;26(2):546-57.
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2007: Ramírez Fidel; Schlicker Andreas; Assenov Yassen; Lengauer Thomas; Albrecht Mario
Computational analysis of human protein interaction networks.
Proteomics 2007;7(15):2541-52.
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2007: Hartmann Christoph; Antes Iris; Lengauer Thomas
IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
Protein science : a publication of the Protein Society 2007;16(7):1294-307.
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2007: Welker M-W; Hofmann W-P; Welsch C; von Wagner M; Herrmann E; Lengauer T; Zeuzem S; Sarrazin C
Correlation of amino acid variations within nonstructural 4B protein with initial viral kinetics during interferon-alpha-based therapy in HCV-1b-infected patients.
Journal of viral hepatitis 2007;14(5):338-49.
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2007: Schlicker Andreas; Huthmacher Carola; Ramírez Fidel; Lengauer Thomas; Albrecht Mario
Functional evaluation of domain-domain interactions and human protein interaction networks.
Bioinformatics (Oxford, England) 2007;23(7):859-65.
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2007: Sander Oliver; Sing Tobias; Sommer Ingolf; Low Andrew J; Cheung Peter K; Harrigan P Richard; Lengauer Thomas; Domingues Francisco S
Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage.
PLoS computational biology 2007;3(3):e58.
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2007: Sing Tobias; Low Andrew J; Beerenwinkel Niko; Sander Oliver; Cheung Peter K; Domingues Francisco S; Büch Joachim; Däumer Martin; Kaiser Rolf; Lengauer Thomas; Harrigan P Richard
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates.
Antiviral therapy 2007;12(7):1097-106.
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2007: Steffen Andreas; Thiele Carolin; Tietze Simon; Strassnig Christian; Kämper Andreas; Lengauer Thomas; Wenz Gerhard; Apostolakis Joannis
Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening.
Chemistry (Weinheim an der Bergstrasse, Germany) 2007;13(24):6801-9.
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2007: Flockerzi Aline; Maydt Jochen; Frank Oliver; Ruggieri Alessia; Maldener Esther; Seifarth Wolfgang; Medstrand Patrik; Lengauer Thomas; Meyerhans Andreas; Leib-Mösch Christine; Meese Eckart; Mayer Jens
Expression pattern analysis of transcribed HERV sequences is complicated by ex vivo recombination.
Retrovirology 2007;4():39.
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2007: Altmann Andre; Beerenwinkel Niko; Sing Tobias; Savenkov Igor; Doumer Martin; Kaiser Rolf; Rhee Soo-Yon; Fessel W Jeffrey; Shafer Robert W; Lengauer Thomas
Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance.
Antiviral therapy 2007;12(2):169-78.
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2007: Schlicker Andreas; Rahnenführer Jörg; Albrecht Mario; Lengauer Thomas; Domingues Francisco S
GOTax: investigating biological processes and biochemical activities along the taxonomic tree.
Genome biology 2007;8(3):R33.
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2007: Schulz Wolfgang A; Alexa Adrian; Jung Volker; Hader Christiane; Hoffmann Michèle J; Yamanaka Masanori; Fritzsche Sandy; Wlazlinski Agnes; Müller Mirko; Lengauer Thomas; Engers Rainer; Florl Andrea R; Wullich Bernd; Rahnenführer Jörg
Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer.
Molecular cancer 2007;6():14.
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2006: Lehmann Clara; Däumer Martin; Boussaad Ibrahim; Sing Tobias; Beerenwinkel Niko; Lengauer Thomas; Schmeisser Norbert; Wyen Christoph; Fätkenheuer Gerd; Kaiser Rolf
Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART.
Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2006;37(4):300-4.
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2006: Lengauer Thomas; Sing Tobias
Bioinformatics-assisted anti-HIV therapy.
Nature reviews. Microbiology 2006;4(10):790-7.
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2006: Steffen Andreas; Kämper Andreas; Lengauer Thomas
Flexible docking of ligands into synthetic receptors using a two-sided incremental construction algorithm.
Journal of chemical information and modeling 2006;46(4):1695-703.
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2006: Svicher Valentina; Sing Tobias; Santoro Maria Mercedes; Forbici Federica; Rodríguez-Barrios Fátima; Bertoli Ada; Beerenwinkel Niko; Bellocchi Maria Concetta; Gago Federigo; d'Arminio Monforte Antonella; Antinori Andrea; Lengauer Thomas; Ceccherini-Silberstein Francesca; Perno Carlo Federico
Involvement of novel human immunodeficiency virus type 1 reverse transcriptase mutations in the regulation of resistance to nucleoside inhibitors.
Journal of virology 2006;80(14):7186-98.
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2006: Alexa Adrian; Rahnenführer Jörg; Lengauer Thomas
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure.
Bioinformatics (Oxford, England) 2006;22(13):1600-7.
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2006: Heil Burkhard; Ludwig Jost; Lichtenberg-Fraté Hella; Lengauer Thomas
Computational recognition of potassium channel sequences.
Bioinformatics (Oxford, England) 2006;22(13):1562-8.
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2006: Maydt Jochen; Lengauer Thomas
Recco: recombination analysis using cost optimization.
Bioinformatics (Oxford, England) 2006;22(9):1064-71.
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2006: Kämper Andreas; Apostolakis Joannis; Rarey Matthias; Marian Christel M; Lengauer Thomas
Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.
Journal of chemical information and modeling 2006;46(2):903-11.
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2006: Neumann Dirk; Kohlbacher Oliver; Merkwirth Christian; Lengauer Thomas
A fully computational model for predicting percutaneous drug absorption.
Journal of chemical information and modeling 2006;46(1):424-9.
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2006: Plotz Guido; Welsch Christoph; Giron-Monzon Luis; Friedhoff Peter; Albrecht Mario; Piiper Albrecht; Biondi Ricardo M; Lengauer Thomas; Zeuzem Stefan; Raedle Jochen
Mutations in the MutSalpha interaction interface of MLH1 can abolish DNA mismatch repair.
Nucleic acids research 2006;34(22):6574-86.
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2006: Yin Junming; Beerenwinkel Niko; Rahnenführer Jörg; Lengauer Thomas
Model selection for mixtures of mutagenetic trees.
Statistical applications in genetics and molecular biology 2006;5():Article17.
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2006: Sommer Ingolf; Toppo Stefano; Sander Oliver; Lengauer Thomas; Tosatto Silvio C E
Improving the quality of protein structure models by selecting from alignment alternatives.
BMC bioinformatics 2006;7():364.
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2006: Mihm Ulrike; Grigorian Natalia; Welsch Christoph; Herrmann Eva; Kronenberger Bernd; Teuber Gerlinde; von Wagner Michael; Hofmann Wolf-Peter; Albrecht Mario; Lengauer Thomas; Zeuzem Stefan; Sarrazin Christoph
Amino acid variations in hepatitis C virus p7 and sensitivity to antiviral combination therapy with amantadine in chronic hepatitis C.
Antiviral therapy 2006;11(4):507-19.
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2006: Schlicker Andreas; Domingues Francisco S; Rahnenführer Jörg; Lengauer Thomas
A new measure for functional similarity of gene products based on Gene Ontology.
BMC bioinformatics 2006;7():302.
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2006: Zhu Hongbo; Domingues Francisco S; Sommer Ingolf; Lengauer Thomas
NOXclass: prediction of protein-protein interaction types.
BMC bioinformatics 2006;7():27.
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2006: Sander Oliver; Sommer Ingolf; Lengauer Thomas
Local protein structure prediction using discriminative models.
BMC bioinformatics 2006;7():14.
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2005: Sarrazin Christoph; Mihm Ulrike; Herrmann Eva; Welsch Christoph; Albrecht Mario; Sarrazin Ulrike; Traver Stella; Lengauer Thomas; Zeuzem Stefan
Clinical significance of in vitro replication-enhancing mutations of the hepatitis C virus (HCV) replicon in patients with chronic HCV infection.
The Journal of infectious diseases 2005;192(10):1710-9.
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2005: Beerenwinkel Niko; Sing Tobias; Lengauer Thomas; Rahnenführer Jörg; Roomp Kirsten; Savenkov Igor; Fischer Roman; Hoffmann Daniel; Selbig Joachim; Korn Klaus; Walter Hauke; Berg Thomas; Braun Patrick; Fätkenheuer Gerd; Oette Mark; Rockstroh Jürgen; Kupfer Bernd; Kaiser Rolf; Däumer Martin
Computational methods for the design of effective therapies against drug resistant HIV strains.
Bioinformatics (Oxford, England) 2005;21(21):3943-50.
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2005: Wemmert Silke; Ketter Ralf; Rahnenführer Jörg; Beerenwinkel Niko; Strowitzki Martin; Feiden Wolfgang; Hartmann Christian; Lengauer Thomas; Stockhammer Florian; Zang Klaus D; Meese Eckart; Steudel Wolf-Ingo; von Deimling Andreas; Urbschat Steffi
Patients with high-grade gliomas harboring deletions of chromosomes 9p and 10q benefit from temozolomide treatment.
Neoplasia (New York, N.Y.) 2005;7(10):883-93.
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2005: Hessler Gerhard; Zimmermann Marc; Matter Hans; Evers Andreas; Naumann Thorsten; Lengauer Thomas; Rarey Matthias
Multiple-ligand-based virtual screening: methods and applications of the MTree approach.
Journal of medicinal chemistry 2005;48(21):6575-84.
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2005: Sing Tobias; Sander Oliver; Beerenwinkel Niko; Lengauer Thomas
ROCR: visualizing classifier performance in R.
Bioinformatics (Oxford, England) 2005;21(20):3940-1.
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2005: Bojunga Jörg; Welsch Christoph; Antes Iris; Albrecht Mario; Lengauer Thomas; Zeuzem Stefan
Structural and functional analysis of a novel mutation of CYP21B in a heterozygote carrier of 21-hydroxylase deficiency.
Human genetics 2005;117(6):558-64.
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2005: Albrecht Mario; Huthmacher Carola; Tosatto Silvio C E; Lengauer Thomas
Decomposing protein networks into domain-domain interactions.
Bioinformatics (Oxford, England) 2005;21 Suppl 2():ii220-1.
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2005: Antes Iris; Merkwirth Christian; Lengauer Thomas
POEM: Parameter Optimization using Ensemble Methods: application to target specific scoring functions.
Journal of chemical information and modeling 2005;45(5):1291-302.
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2005: Merkwirth Christian; Lengauer Thomas
Automatic generation of complementary descriptors with molecular graph networks.
Journal of chemical information and modeling 2005;45(5):1159-68.
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2005: Beerenwinkel Niko; Rahnenführer Jörg; Däumer Martin; Hoffmann Daniel; Kaiser Rolf; Selbig Joachim; Lengauer Thomas
Learning multiple evolutionary pathways from cross-sectional data.
Journal of computational biology : a journal of computational molecular cell biology 2005;12(6):584-98.
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2005: Beerenwinkel Niko; Däumer Martin; Sing Tobias; Rahnenfuhrer Jörg; Lengauer Thomas; Selbig Joachim; Hoffmann Daniel; Kaiser Rolf
Estimating HIV evolutionary pathways and the genetic barrier to drug resistance.
The Journal of infectious diseases 2005;191(11):1953-60.
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2005: Rahnenführer Jörg; Beerenwinkel Niko; Schulz Wolfgang A; Hartmann Christian; von Deimling Andreas; Wullich Bernd; Lengauer Thomas
Estimating cancer survival and clinical outcome based on genetic tumor progression scores.
Bioinformatics (Oxford, England) 2005;21(10):2438-46.
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2005: Beerenwinkel Niko; Rahnenführer Jörg; Kaiser Rolf; Hoffmann Daniel; Selbig Joachim; Lengauer Thomas
Mtreemix: a software package for learning and using mixture models of mutagenetic trees.
Bioinformatics (Oxford, England) 2005;21(9):2106-7.
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2005: Ulmschneider Sarah; Müller-Vieira Ursula; Mitrenga Markus; Hartmann Rolf W; Oberwinkler-Marchais Sandrine; Klein Christian D; Bureik Matthias; Bernhardt Rita; Antes Iris; Lengauer Thomas
Synthesis and evaluation of imidazolylmethylenetetrahydronaphthalenes and imidazolylmethyleneindanes: potent inhibitors of aldosterone synthase.
Journal of medicinal chemistry 2005;48(6):1796-805.
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2005: Ulmschneider Sarah; Müller-Vieira Ursula; Klein Christian D; Antes Iris; Lengauer Thomas; Hartmann Rolf W
Synthesis and evaluation of (pyridylmethylene)tetrahydronaphthalenes/-indanes and structurally modified derivatives: potent and selective inhibitors of aldosterone synthase.
Journal of medicinal chemistry 2005;48(5):1563-75.
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2005: Albrecht Mario; Choubey Divaker; Lengauer Thomas
The HIN domain of IFI-200 proteins consists of two OB folds.
Biochemical and biophysical research communications 2005;327(3):679-87.
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2005: Hahn Andreas; Rahnenführer Jörg; Talwar Priti; Lengauer Thomas
Confirmation of human protein interaction data by human expression data.
BMC bioinformatics 2005;6():112.
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2004: Merkwirth Christian; Mauser Harald; Schulz-Gasch Tanja; Roche Olivier; Stahl Martin; Lengauer Thomas
Ensemble methods for classification in cheminformatics.
Journal of chemical information and computer sciences 2004;44(6):1971-8.
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2004: von Ohsen Niklas; Sommer Ingolf; Zimmer Ralf; Lengauer Thomas
Arby: automatic protein structure prediction using profile-profile alignment and confidence measures.
Bioinformatics (Oxford, England) 2004;20(14):2228-35.
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2004: Hofmann Wolf Peter; Herrmann Eva; Kronenberger Bernd; Merkwirth Christian; Welsch Christoph; Lengauer Thomas; Zeuzem Stefan; Sarrazin Christoph
Association of HCV-related mixed cryoglobulinemia with specific mutational pattern of the HCV E2 protein and CD81 expression on peripheral B lymphocytes.
Blood 2004;104(4):1228-9.
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2004: Albrecht Mario; Golatta Michael; Wüllner Ullrich; Lengauer Thomas
Structural and functional analysis of ataxin-2 and ataxin-3.
European journal of biochemistry / FEBS 2004;271(15):3155-70.
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2004: Albrecht Mario; Lengauer Thomas
Novel Sm-like proteins with long C-terminal tails and associated methyltransferases.
FEBS letters 2004;569(1-3):18-26.
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2004: Domingues Francisco S; Rahnenführer Jörg; Lengauer Thomas
Automated clustering of ensembles of alternative models in protein structure databases.
Protein engineering, design & selection : PEDS 2004;17(6):537-43.
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2004: Albrecht Mario; Lengauer Thomas
Survey on the PABC recognition motif PAM2.
Biochemical and biophysical research communications 2004;316(1):129-38.
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2004: Sommer I; Rahnenführer J; Domingues F S; de Lichtenberg U; Lengauer T
Predicting protein structure classes from function predictions.
Bioinformatics (Oxford, England) 2004;20(5):770-6.
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2004: Lengauer Thomas; Lemmen Christian; Rarey Matthias; Zimmermann Marc
Novel technologies for virtual screening.
Drug discovery today 2004;9(1):27-34.
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2004: Rahnenführer Jörg; Domingues Francisco S; Maydt Jochen; Lengauer Thomas
Calculating the statistical significance of changes in pathway activity from gene expression data.
Statistical applications in genetics and molecular biology 2004;3():Article16.
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2003: Albrecht Mario; Lengauer Thomas; Schreiber Stefan
Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence.
Bioinformatics (Oxford, England) 2003;19(17):2171-5.
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2003: Albrecht Mario; Domingues Francisco S; Schreiber Stefan; Lengauer Thomas
Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2.
FEBS letters 2003;554(3):520-8.
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2003: Wolf Katharina; Walter Hauke; Beerenwinkel Niko; Keulen Wilco; Kaiser Rolf; Hoffmann Daniel; Lengauer Thomas; Selbig Joachim; Vandamme Anne-Mieke; Korn Klaus; Schmidt Barbara
Tenofovir resistance and resensitization.
Antimicrobial agents and chemotherapy 2003;47(11):3478-84.
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2003: Albrecht Mario; Tosatto Silvio C E; Lengauer Thomas; Valle Giorgio
Simple consensus procedures are effective and sufficient in secondary structure prediction.
Protein engineering 2003;16(7):459-62.
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2003: Albrecht Mario; Lengauer Thomas
Pyranose oxidase identified as a member of the GMC oxidoreductase family.
Bioinformatics (Oxford, England) 2003;19(10):1216-20.
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2003: Beerenwinkel Niko; Däumer Martin; Oette Mark; Korn Klaus; Hoffmann Daniel; Kaiser Rolf; Lengauer Thomas; Selbig Joachim; Walter Hauke
Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes.
Nucleic acids research 2003;31(13):3850-5.
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2003: Albrecht Mario; Domingues Francisco S; Schreiber Stefan; Lengauer Thomas
Identification of mammalian orthologs associates PYPAF5 with distinct functional roles.
FEBS letters 2003;538(1-3):173-7.
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2003: Albrecht Mario; Hoffmann Daniel; Evert Bernd O; Schmitt Ina; Wüllner Ullrich; Lengauer Thomas
Structural modeling of ataxin-3 reveals distant homology to adaptins.
Proteins 2003;50(2):355-70.
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2003: Zien Alexander; Fluck Juliane; Zimmer Ralf; Lengauer Thomas
Microarrays: how many do you need?
Journal of computational biology : a journal of computational molecular cell biology 2003;10(3-4):653-67.
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2003: Beerenwinkel Niko; Lengauer Thomas; Däumer Martin; Kaiser Rolf; Walter Hauke; Korn Klaus; Hoffmann Daniel; Selbig Joachim
Methods for optimizing antiviral combination therapies.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i16-25.
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2002: Sommer Ingolf; Zien Alexander; von Ohsen Niklas; Zimmer Ralf; Lengauer Thomas
Confidence measures for protein fold recognition.
Bioinformatics (Oxford, England) 2002;18(6):802-12.
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2002: Beerenwinkel Niko; Schmidt Barbara; Walter Hauke; Kaiser Rolf; Lengauer Thomas; Hoffmann Daniel; Korn Klaus; Selbig Joachim
Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):8271-6.
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2002: Freudenberg Jan; Zimmer Ralf; Hanisch Daniel; Lengauer Thomas
A hypergraph-based method for unification of existing protein structure- and sequence-families.
In silico biology 2002;2(3):339-49.
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2002: Albrecht Mario; Hanisch Daniel; Zimmer Ralf; Lengauer Thomas
Improving fold recognition of protein threading by experimental distance constraints.
In silico biology 2002;2(3):325-37.
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2002: Hanisch Daniel; Zimmer Ralf; Lengauer Thomas
ProML--the protein markup language for specification of protein sequences, structures and families.
In silico biology 2002;2(3):313-24.
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2002: Hanisch Daniel; Zien Alexander; Zimmer Ralf; Lengauer Thomas
Co-clustering of biological networks and gene expression data.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S145-54.
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2001: Claussen H; Buning C; Rarey M; Lengauer T
FlexE: efficient molecular docking considering protein structure variations.
Journal of molecular biology 2001;308(2):377-95.
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2001: Zien A; Aigner T; Zimmer R; Lengauer T
Centralization: a new method for the normalization of gene expression data.
Bioinformatics (Oxford, England) 2001;17 Suppl 1():S323-31.
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2000: Küffner R; Zimmer R; Lengauer T
Pathway analysis in metabolic databases via differential metabolic display (DMD).
Bioinformatics (Oxford, England) 2000;16(9):825-36.
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2000: Zien A; Rätsch G; Mika S; Schölkopf B; Lengauer T; Müller K R
Engineering support vector machine kernels that recognize translation initiation sites.
Bioinformatics (Oxford, England) 2000;16(9):799-807.
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2000: Lemmen C; Lengauer T
Computational methods for the structural alignment of molecules.
Journal of computer-aided molecular design 2000;14(3):215-32.
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2000: Zien A; Zimmer R; Lengauer T
A simple iterative approach to parameter optimization.
Journal of computational biology : a journal of computational molecular cell biology 2000;7(3-4):483-501.
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2000: Zien A; Küffner R; Zimmer R; Lengauer T
Analysis of gene expression data with pathway scores.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():407-17.
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1999: Selbig J; Mevissen T; Lengauer T
Decision tree-based formation of consensus protein secondary structure prediction.
Bioinformatics (Oxford, England) 1999;15(12):1039-46.
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1999: Kramer B; Rarey M; Lengauer T
Evaluation of the FLEXX incremental construction algorithm for protein-ligand docking.
Proteins 1999;37(2):228-41.
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1999: Hoffmann D; Kramer B; Washio T; Steinmetzer T; Rarey M; Lengauer T
Two-stage method for protein-ligand docking.
Journal of medicinal chemistry 1999;42(21):4422-33.
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1999: Thiele R; Zimmer R; Lengauer T
Protein threading by recursive dynamic programming.
Journal of molecular biology 1999;290(3):757-79.
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1999: Rarey M; Kramer B; Lengauer T
Docking of hydrophobic ligands with interaction-based matching algorithms.
Bioinformatics (Oxford, England) 1999;15(3):243-50.
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1999: Rarey M; Kramer B; Lengauer T
The particle concept: placing discrete water molecules during protein-ligand docking predictions.
Proteins 1999;34(1):17-28.
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1999: Lemmen C; Zien A; Zimmer R; Lengauer T
Application of parameter optimization to molecular comparison problems.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1999;():482-93.
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1998: Lemmen C; Lengauer T; Klebe G
FLEXS: a method for fast flexible ligand superposition.
Journal of medicinal chemistry 1998;41(23):4502-20.
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1998: Lemmen C; Hiller C; Lengauer T
RigFit: a new approach to superimposing ligand molecules.
Journal of computer-aided molecular design 1998;12(5):491-502.
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1997: Rarey M; Kramer B; Lengauer T
Multiple automatic base selection: protein-ligand docking based on incremental construction without manual intervention.
Journal of computer-aided molecular design 1997;11(4):369-84.
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1997: Lemmen C; Lengauer T
Time-efficient flexible superposition of medium-sized molecules.
Journal of computer-aided molecular design 1997;11(4):357-68.
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1997: Kramer B; Rarey M; Lengauer T
CASP2 experiences with docking flexible ligands using FlexX.
Proteins 1997;Suppl 1():221-5.
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1997: Koch I; Lengauer T
Detection of distant structural similarities in a set of proteins using a fast graph-based method.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():167-78.
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1996: Rarey M; Kramer B; Lengauer T; Klebe G
A fast flexible docking method using an incremental construction algorithm.
Journal of molecular biology 1996;261(3):470-89.
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1996: Lengauer T; Rarey M
Computational methods for biomolecular docking.
Current opinion in structural biology 1996;6(3):402-6.
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1996: Rarey M; Wefing S; Lengauer T
Placement of medium-sized molecular fragments into active sites of proteins.
Journal of computer-aided molecular design 1996;10(1):41-54.
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1996: Koch I; Lengauer T; Wanke E
An algorithm for finding maximal common subtopologies in a set of protein structures.
Journal of computational biology : a journal of computational molecular cell biology 1996;3(2):289-306.
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1995: Thiele R; Zimmer R; Lengauer T
Recursive dynamic programming for adaptive sequence and structure alignment.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():384-92.
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1995: Rarey M; Kramer B; Lengauer T
Time-efficient docking of flexible ligands into active sites of proteins.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():300-8.
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