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Ulf Leser

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Computational Biology

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TOP 3
Maria Joosten; Dido Lenze; Ulf Leser; Volkhard Seitz; Anke Sommerfeld; Harald Stein; Karin Zimmermann; Erika Berg; Michael Hummel
Histone acetylation and DNA demethylation of T cells result in an anaplastic large cell lymphoma-like phenotype.
Mariana Neves; Stefanie Seltmann; Harald Stachelscheid; Nancy Mah; Alexander Damaschun; Jean-Fred Fontaine; Andreas Kurtz; Fritz Lekschas; Ulf Leser
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
Philippe Thomas; Alexander Vowinkel; Sebastian Arzt; Johannes Starlinger; Ulf Leser
GeneView: a comprehensive semantic search engine for PubMed.

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All Publications

2013: Maria Joosten; Dido Lenze; Ulf Leser; Volkhard Seitz; Anke Sommerfeld; Harald Stein; Karin Zimmermann; Erika Berg; Michael Hummel
Histone acetylation and DNA demethylation of T cells result in an anaplastic large cell lymphoma-like phenotype.
Haematologica 2013;98(2):247-54.
2013: Mariana Neves; Stefanie Seltmann; Harald Stachelscheid; Nancy Mah; Alexander Damaschun; Jean-Fred Fontaine; Andreas Kurtz; Fritz Lekschas; Ulf Leser
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
Database : the journal of biological databases and curation 2013;2013():bat020.
2012: Philippe Thomas; Alexander Vowinkel; Sebastian Arzt; Johannes Starlinger; Ulf Leser
GeneView: a comprehensive semantic search engine for PubMed.
Nucleic acids research 2012;40(Web Server issue):W585-91.
2012: Tim Rocktäschel; Michael Weidlich; Ulf Leser
ChemSpot: a hybrid system for chemical named entity recognition.
Bioinformatics (Oxford, England) 2012;28(12):1633-40.
2012: Sebastian Wandelt; Ulf Leser
Adaptive efficient compression of genomes.
Algorithms for molecular biology : AMB 2012;7(1):30.
2012: André Koschmieder; Thomas Stoltmann; Silke Trissl; Karin Zimmermann; Ulf Leser
Tools for managing and analyzing microarray data.
Briefings in bioinformatics 2012;13(1):46-60.
2011: Volkhard Seitz; Philippe E Thomas; Karin Zimmermann; Ulrike Paul; Anke Ehlers; Maria Joosten; Lora Dimitrova; Dido Lenze; Anke Sommerfeld; Elisabeth Oker; Ulf Leser; Harald Stein; Michael Hummel
Classical Hodgkin's lymphoma shows epigenetic features of abortive plasma cell differentiation.
Haematologica 2011;96(6):863-70.
2011: Philip Groth; Ulf Leser; Bertram Weiss
Phenotype mining for functional genomics and gene discovery.
Methods in molecular biology (Clifton, N.J.) 2011;760():159-73.
2010: Philip Groth; Ivan Kalev; Ivaylo Kirov; Borislav Traikov; Ulf Leser; Bertram Weiss
Phenoclustering: online mining of cross-species phenotypes.
Bioinformatics (Oxford, England) 2010;26(15):1924-5.
2010: Samira Jaeger; Christine T Sers; Ulf Leser
Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction.
BMC genomics 2010;11():717.
2010: Samira Jaeger; Gokhan Ertaylan; David van Dijk; Ulf Leser; Peter Sloot
Inference of surface membrane factors of HIV-1 infection through functional interaction networks.
PloS one 2010;5(10):e13139.
2010: Quang Long Nguyen; Domonkos Tikk; Ulf Leser
Simple tricks for improving pattern-based information extraction from the biomedical literature.
Journal of biomedical semantics 2010;1(1):9.
2010: Domonkos Tikk; Philippe Thomas; Peter Palaga; Joerg Hakenberg; Ulf Leser
A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.
PLoS computational biology 2010;6():e1000837.
2008: Samira Jaeger; Sylvain Gaudan; Ulf Leser; Dietrich Rebholz-Schuhmann
Integrating protein-protein interactions and text mining for protein function prediction.
BMC bioinformatics 2008;9 Suppl 8():S2.
2006: Conrad Plake; Torsten Schiemann; Marcus Pankalla; Joerg Hakenberg; Ulf Leser
AliBaba: PubMed as a graph.
Bioinformatics (Oxford, England) 2006;22(19):2444-5.
2005: Ulf Leser; Joerg Hakenberg
What makes a gene name? Named entity recognition in the biomedical literature.
Briefings in bioinformatics 2005;6(4):357-69.
2005: Ulf Leser
A query language for biological networks.
Bioinformatics (Oxford, England) 2005;21 Suppl 2():ii33-9.
2005: Kristian Rother; Elke Michalsky; Ulf Leser
How well are protein structures annotated in secondary databases?
Proteins 2005;60(4):571-6.
2005: Joerg Hakenberg; Steffen Bickel; Conrad Plake; Ulf Brefeld; Hagen Zahn; Lukas Faulstich; Ulf Leser; Tobias Scheffer
Systematic feature evaluation for gene name recognition.
BMC bioinformatics 2005;6 Suppl 1():S9.
2005: Silke Trissl; Kristian Rother; Heiko Müller; Thomas Steinke; Ina Koch; Robert Preissner; Cornelius Frömmel; Ulf Leser
Columba: an integrated database of proteins, structures, and annotations.
BMC bioinformatics 2005;6():81.
2004: Joerg Hakenberg; Sebastian Schmeier; Axel Kowald; Edda Klipp; Ulf Leser
Finding kinetic parameters using text mining.
Omics : a journal of integrative biology 2004;8(2):131-52.