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Valmir Barbosa

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Valmir C Barbosa
The Conduciveness of CA-Rule Graphs.
Priscila F Aquino; Gabriel D T Araujo; Valmir C Barbosa; Maria G C Carvalho; Sidney R S Chalub; Gilberto B Domont; Juliana S G Fischer; Afonso D Leão de Souza; Antonia Q Lima de Souza; Ana G C Neves-Ferreira; Jonas Perales; Jucilana Viana; Paulo C Carvalho
Are gastric cancer resection margin proteomic profiles more similar to those from controls or tumors?
Paulo C Carvalho; Juliana S G Fischer; Tao Xu; John R Yates; Valmir C Barbosa
PatternLab: from mass spectra to label-free differential shotgun proteomics.

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All Publications

2013: Valmir C Barbosa
The Conduciveness of CA-Rule Graphs.
Artificial life 2013;19(2):255-66.
2012: Priscila F Aquino; Gabriel D T Araujo; Valmir C Barbosa; Maria G C Carvalho; Sidney R S Chalub; Gilberto B Domont; Juliana S G Fischer; Afonso D Leão de Souza; Antonia Q Lima de Souza; Ana G C Neves-Ferreira; Jonas Perales; Jucilana Viana; Paulo C Carvalho
Are gastric cancer resection margin proteomic profiles more similar to those from controls or tumors?
Journal of proteome research 2012;11(12):5836-42.
2012: Paulo C Carvalho; Juliana S G Fischer; Tao Xu; John R Yates; Valmir C Barbosa
PatternLab: from mass spectra to label-free differential shotgun proteomics.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2012;Chapter 13():Unit13.19.
2012: Paulo C Carvalho; John R Yates; Valmir C Barbosa
Improving the TFold test for differential shotgun proteomics.
Bioinformatics (Oxford, England) 2012;28(12):1652-4.
2012: Paulo C Carvalho; Daniel Cociorva; Juliana S G Fischer; Jonas Perales; Richard H Valente; Tao Xu; John R Yates; Tiago S Balbuena; Valmir C Barbosa
Search engine processor: Filtering and organizing peptide spectrum matches.
Proteomics 2012;12(7):944-9.
2011: Rodrigo Barboza; Valmir C Barbosa; Daniel Cociorva; Felipe M G França; Jonas Perales; Richard H Valente; Tao Xu; John R Yates; Paulo C Carvalho
Can the false-discovery rate be misleading?
Proteomics 2011;11(20):4105-8.
2011: F P M dos Santos; Valmir C Barbosa; R Donangelo; S R Souza
Experimental analysis of lateral impact on planar brittle material: spatial properties of cracks.
Physical review. E, Statistical, nonlinear, and soft matter physics 2011;84(2 Pt 2):026115.
2011: Andre Nathan; Valmir C Barbosa
Network algorithmics and the emergence of information integration in cortical models.
Physical review. E, Statistical, nonlinear, and soft matter physics 2011;84(1 Pt 1):011904.
2011: Paulo C Carvalho; Juliana S G Fischer; Jonas Perales; John R Yates; Valmir C Barbosa; Elias Bareinboim
Analyzing marginal cases in differential shotgun proteomics.
Bioinformatics (Oxford, England) 2011;27(2):275-6.
2010: Valmir C Barbosa; Raul Donangelo; Sergio R Souza
Early appraisal of the fixation probability in directed networks.
Physical review. E, Statistical, nonlinear, and soft matter physics 2010;82(4 Pt 2):046114.
2010: Paulo C Carvalho; John R Yates Iii; Valmir C Barbosa
Analyzing shotgun proteomic data with PatternLab for proteomics.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2010;Chapter 13():Unit 13.13.1-15.
2010: F P M dos Santos; Valmir C Barbosa; R Donangelo; S R Souza
Experimental analysis of lateral impact on planar brittle material.
Physical review. E, Statistical, nonlinear, and soft matter physics 2010;81(4 Pt 2):046108.
2010: Paulo C Carvalho; Xuemei Han; Tao Xu; Daniel Cociorva; Maria da Gloria Carvalho; Valmir C Barbosa; John R Yates
XDIA: improving on the label-free data-independent analysis.
Bioinformatics (Oxford, England) 2010;26(6):847-8.
2010: Juliana de Saldanha da Gama Fischer; Lujian Liao; Paulo C Carvalho; Valmir C Barbosa; Gilberto B Domont; Maria da Gloria da Costa Carvalho; John R Yates
Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcohol.
Journal of proteomics 2010;73(5):1018-27.
2010: Andre Nathan; Valmir C Barbosa
Network algorithmics and the emergence of the cortical synaptic-weight distribution.
Physical review. E, Statistical, nonlinear, and soft matter physics 2010;81(2 Pt 1):021916.
2010: Valmir C Barbosa
Network conduciveness with application to the graph-coloring and independent-set optimization transitions.
PloS one 2010;5(7):e11232.
2009: Paulo C Carvalho; Tao Xu; Xuemei Han; Daniel Cociorva; Valmir C Barbosa; John R Yates
YADA: a tool for taking the most out of high-resolution spectra.
Bioinformatics (Oxford, England) 2009;25(20):2734-6.
2009: Valmir C Barbosa; Raul Donangelo; Sergio R Souza
Network growth for enhanced natural selection.
Physical review. E, Statistical, nonlinear, and soft matter physics 2009;80(2 Pt 2):026115.
2009: Paulo C Carvalho; Daniel Cociorva; Catherine C L Wong; Maria da Gloria da C Carvalho; Valmir C Barbosa; John R Yates
Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra.
Analytical chemistry 2009;81(5):1996-2003.
2009: Paulo C Carvalho; Juliana S G Fischer; Emily I Chen; Gilberto B Domont; Maria G C Carvalho; Wim Degrave; John R Yates; Valmir C Barbosa
GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.
Proteome science 2009;7():6.
2008: Elias Bareinboim; Valmir C Barbosa
Descents and nodal load in scale-free networks.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;77(4 Pt 2):046111.
2008: Paulo C Carvalho; Juliana S G Fischer; Emily I Chen; John R Yates; Valmir C Barbosa
PatternLab for proteomics: a tool for differential shotgun proteomics.
BMC bioinformatics 2008;9():316.
2008: P C Carvalho; J Hewel; Valmir C Barbosa; J R Yates
Identifying differences in protein expression levels by spectral counting and feature selection.
Genetics and molecular research : GMR 2008;7(2):342-56.
2008: Andre Nathan; Valmir C Barbosa
V-like formations in flocks of artificial birds.
Artificial life 2008;14(2):179-88.
2006: Alexandre O Stauffer; Valmir C Barbosa
Dissemination strategy for immunizing scale-free networks.
Physical review. E, Statistical, nonlinear, and soft matter physics 2006;74(5 Pt 2):056105.
2006: Valmir C Barbosa; Raul Donangelo; Sergio R Souza
Emergence of scale-free networks from local connectivity and communication trade-offs.
Physical review. E, Statistical, nonlinear, and soft matter physics 2006;74(1 Pt 2):016113.
2004: Luis E Flores; Eduardo J Aguilar; Valmir C Barbosa; Luís Alfredo V de Carvalho
A graph model for the evolution of specificity in humoral immunity.
Journal of theoretical biology 2004;229(3):311-25.