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Wen-Hsiung Li

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TOP 3
Misook Ha; Soondo Hong; Wen-Hsiung Li
Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context.
Wen-Yu Liu; Chen-Hua Lu; Mei-Yeh Jade Lu; Chiou-Rong Sheue; Arthur Chun-Chieh Shih; Shin-Han Shiu; Yeh-Hwa Wu; Chun-Ping Yu; Maurice Sun-Ben Ku; Yao-Ming Chang; Di-Rong Chen; Sean Chun-Chang Chen; Hsuan-Cheng Huang; Hsin-Hung Lin; Wen-Hsiung Li
Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination.
Yao-Ming Chang; Wen-Hsiung Li; Chia-Lin Chang; Arthur Chun-Chieh Shih
Historical profiling of maize duplicate genes sheds light on the evolution of C4 photosynthesis in grasses.

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All Publications

2013: Misook Ha; Soondo Hong; Wen-Hsiung Li
Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context.
Bioinformatics (Oxford, England) 2013;29(9):1199-205.
2013: Wen-Yu Liu; Chen-Hua Lu; Mei-Yeh Jade Lu; Chiou-Rong Sheue; Arthur Chun-Chieh Shih; Shin-Han Shiu; Yeh-Hwa Wu; Chun-Ping Yu; Maurice Sun-Ben Ku; Yao-Ming Chang; Di-Rong Chen; Sean Chun-Chang Chen; Hsuan-Cheng Huang; Hsin-Hung Lin; Wen-Hsiung Li
Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(10):3979-84.
2013: Yao-Ming Chang; Wen-Hsiung Li; Chia-Lin Chang; Arthur Chun-Chieh Shih
Historical profiling of maize duplicate genes sheds light on the evolution of C4 photosynthesis in grasses.
Molecular phylogenetics and evolution 2013;66(2):453-62.
2013: Jui-Jen Chang; Cheng-Yu Ho; Feng-Ju Ho; Yu-Han Hou; Chieh-Chen Huang; Ming-Che Shih; Yueh-Chin Wu; Wen-Hsiung Li
Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production.
Biotechnology for biofuels 2013;6(1):19.
2012: Yan Yuan Tseng; Wen-Hsiung Li
PSC: protein surface classification.
Nucleic acids research 2012;40(Web Server issue):W435-9.
2012: Yong H Woo; Wen-Hsiung Li
Evolutionary conservation of histone modifications in mammals.
Molecular biology and evolution 2012;29(7):1757-67.
2012: Yan Yuan Tseng; Wen-Hsiung Li
Classification of protein functional surfaces using structural characteristics.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(4):1170-5.
2012: Sung-Chou Li; Meng-Ru Ho; Yung-Ming Jeng; Hung-Wei Pan; Kuo-Wang Tsai; Wen-Hsiung Li
MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues.
BMC systems biology 2012;6 Suppl 2():S14.
2012: Yong H Woo; Wen-Hsiung Li
DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes.
Nature communications 2012;3():1004.
2012: Jui-Jen Chang; Hsin-Liang Chen; Cheng-Yu Ho; Feng-Ju Ho; Chieh-Chen Huang; Huei-Mien Ke; Ming-Che Shih; Tsung-Yu Tsai; Christine H-T Wang; Wen-Hsiung Li
PGASO: A synthetic biology tool for engineering a cellulolytic yeast.
Biotechnology for biofuels 2012;5(1):53.
2012: Chen Siang Ng; Pragna I Patel; Randall B Widelitz; Ping Wu; Huanmin Zhang; Chih-Feng Chen; Anne Foley; John Foley; Chih-Jen Huang; Wen-Tau Juan; Yu-Ting Lai; Suzanne M Leal; Wen-Hsiung Li; Wen-Sui Lo; Merry-Lynn McDonald; Cheng-Ming Chuong
The chicken frizzle feather is due to an α-keratin (KRT75) mutation that causes a defective rachis.
PLoS genetics 2012;8(7):e1002748.
2012: Chien-Wei Tseng; Wen-Hsiung Li; Arthur Chun-Chieh Shih; Jen-Yun Chang; Ya-Ya Chang; Chung-Cheng Hsu; Hsuan-Cheng Huang; Hsueh-Fen Juan
Revealing the Anti-Tumor Effect of Artificial miRNA p-27-5p on Human Breast Carcinoma Cell Line T-47D.
International journal of molecular sciences 2012;13(5):6352-69.
2012: Hsin-Liang Chen; Yo-Chia Chen; Hsing-Yi Cho; Kuo-Yen Hung; Huei-Mien Ke; Wan-Ting Lin; Mei-Yeh Jade Lu; Sz-Kai Ruan; Ming-Che Shih; Hiaow-Ting Christine Wang; Tzi-Yuan Wang; Tao-Yuan Wang; Jui-Jen Chang; Wen-Hsiung Li
A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5.
Biotechnology for biofuels 2012;5(1):24.
2012: Meng-Shin Shiao; Ben-Yang Liao; Mei-Yeh Jade Lu; Andrew Ying-Fei Chang; Stella Maris Chen; Yung-Hao Ching; Wen-Hsiung Li
Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection.
Genome biology and evolution 2012;4(5):703-12.
2012: Joshua S Rest; Geoffrey P Morris; Kevin Bullaughey; Wen-Hsiung Li
Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast.
PloS one 2012;7(2):e32274.
2012: Zhenguo Lin; Wen-Hsiung Li
Evolution of 5' untranslated region length and gene expression reprogramming in yeasts.
Molecular biology and evolution 2012;29(1):81-9.
2011: Jieun Yun; Mirjam C Boelens; Nancy Cheng; Eva M Eves; Casey A Frankenberger; Hemant Ishwaran; Wen-Liang Kuo; Wen-Hsiung Li; Han Liang; Andy J Minn; Marsha Rich Rosner
Signalling pathway for RKIP and Let-7 regulates and predicts metastatic breast cancer.
The EMBO journal 2011;30(21):4500-14.
2011: Zhenguo Lin; Wen-Hsiung Li
The evolution of aerobic fermentation in Schizosaccharomyces pombe was associated with regulatory reprogramming but not nucleosome reorganization.
Molecular biology and evolution 2011;28(4):1407-13.
2011: Yan Yuan Tseng; Wen-Hsiung Li
Evolutionary approach to predicting the binding site residues of a protein from its primary sequence.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(13):5313-8.
2011: Yeong-Shin Lin; Fu-Guo Robert Liu; Tzi-Yuan Wang; Cheng-Tsung Pan; Wei-Ting Chang; Wen-Hsiung Li
A simple method using PyrosequencingTM to identify de novo SNPs in pooled DNA samples.
Nucleic acids research 2011;39(5):e28.
2011: Yong H Woo; Wen-Hsiung Li
Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(8):3306-11.
2011: Tzi-Yuan Wang; Yueh-Chin Wu; Chun-Chieh A Shih; Huang-Mo Sung; Ya-Wen Tsai; Chih-Kuan Chen; Hsin-Liang Chen; Yo-Chia Chen; Yu-Hsiang Chen; Hsing-Yi Cho; Shao-Pei Chou; Te-Chin Chu; Kuo-Yen Hung; Teh-Yang Hwa; Huei-Mien Ke; Jeng-Yi Li; Wen-Hsiung Li; Mei-Yeh J Lu; Chi-Tang Mao; Sz-Kai Ruan; Ming-Che Shih
Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses.
Biotechnology for biofuels 2011;4():24.
2011: Zhenguo Lin; Wen-Hsiung Li
Expansion of hexose transporter genes was associated with the evolution of aerobic fermentation in yeasts.
Molecular biology and evolution 2011;28(1):131-42.
2010: J J Emerson; Li-Ching Hsieh; Huang-Mo Sung; Tzi-Yuan Wang; Chih-Jen Huang; Henry Horng-Shing Lu; Mei-Yeh Jade Lu; Shu-Hsing Wu; Wen-Hsiung Li
Natural selection on cis and trans regulation in yeasts.
Genome research 2010;20(6):826-36.
2010: Zhenguo Lin; Wei-Sheng Wu; Han Liang; Yong Woo; Wen-Hsiung Li
The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation.
BMC genomics 2010;11():581.
2010: Yan Yuan Tseng; Z Jeffrey Chen; Wen-Hsiung Li
fPOP: footprinting functional pockets of proteins by comparative spatial patterns.
Nucleic acids research 2010;38(Database issue):D288-95.
2009: Li-Ching Hsieh; Shu-I Lin; Arthur Chun-Chieh Shih; June-Wei Chen; Wei-Yi Lin; Ching-Ying Tseng; Wen-Hsiung Li; Tzyy-Jen Chiou
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing.
Plant physiology 2009;151(4):2120-32.
2009: Huang-Mo Sung; Tzi-Yuan Wang; Daryi Wang; Yu-Shan Huang; Jen-Pey Wu; Huai-Kuang Tsai; Jengnan Tzeng; Chih-Jen Huang; Yi-Chen Lee; Peggy Yang; Joyce Hsu; Tiffany Chang; Chung-Yi Cho; Li-Chuan Weng; Tso-Ching Lee; Tien-Hsien Chang; Wen-Hsiung Li; Ming-Che Shih
Roles of trans and cis variation in yeast intraspecies evolution of gene expression.
Molecular biology and evolution 2009;26(11):2533-8.
2009: Han Liang; Wen-Hsiung Li
Functional compensation by duplicated genes in mouse.
Trends in genetics : TIG 2009;25(10):441-2.
2009: Yan Yuan Tseng; Wen-Hsiung Li
Identification of protein functional surfaces by the concept of a split pocket.
Proteins 2009;76(4):959-76.
2009: Yan Yuan Tseng; Craig Dupree; Z Jeffrey Chen; Wen-Hsiung Li
SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns.
Nucleic acids research 2009;37(Web Server issue):W384-9.
2009: Han Liang; Wen-Hsiung Li
Lowly expressed human microRNA genes evolve rapidly.
Molecular biology and evolution 2009;26(6):1195-8.
2009: Michael E Bradley; Joshua S Rest; Wen-Hsiung Li; Nancy B Schwartz
Sulfate activation enzymes: phylogeny and association with pyrophosphatase.
Journal of molecular evolution 2009;68(1):1-13.
2008: Ya-Wen Chang; Fu-Guo Robert Liu; Ning Yu; Huang-Mo Sung; Peggy Yang; Daryi Wang; Chih-Jen Huang; Ming-Che Shih; Wen-Hsiung Li
Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast.
Molecular biology and evolution 2008;25(9):1863-75.
2008: Han Liang; Yeong-Shin Lin; Wen-Hsiung Li
Fast evolution of core promoters in primate genomes.
Molecular biology and evolution 2008;25(6):1239-44.
2008: Chien-Yu Chen; Huai-Kuang Tsai; Chen-Ming Hsu; Mei-Ju May Chen; Hao-Geng Hung; Grace Tzu-Wei Huang; Wen-Hsiung Li
Discovering gapped binding sites of yeast transcription factors.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(7):2527-32.
2008: Anuphap Prachumwat; Wen-Hsiung Li
Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes.
Genome research 2008;18(2):221-32.
2008: Wei-Sheng Wu; Wen-Hsiung Li
Systematic identification of yeast cell cycle transcription factors using multiple data sources.
BMC bioinformatics 2008;9():522.
2008: Xu Zhang; Jake K Byrnes; Thomas S Gal; Wen-Hsiung Li; Justin O Borevitz
Whole genome transcriptome polymorphisms in Arabidopsis thaliana.
Genome biology 2008;9(11):R165.
2008: Wei-Sheng Wu; Wen-Hsiung Li
Identifying gene regulatory modules of heat shock response in yeast.
BMC genomics 2008;9():439.
2008: Han Liang; Kristina Rogale Plazonic; Jianping Chen; Wen-Hsiung Li; Ariel Fernández
Protein under-wrapping causes dosage sensitivity and decreases gene duplicability.
PLoS genetics 2008;4(1):e11.
2007: Kousuke Hanada; Shin-Han Shiu; Wen-Hsiung Li
The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes.
Molecular biology and evolution 2007;24(10):2235-41.
2007: Han Liang; Wen-Hsiung Li
MicroRNA regulation of human protein protein interaction network.
RNA (New York, N.Y.) 2007;13(9):1402-8.
2007: Han Liang; Wen-Hsiung Li
Gene essentiality, gene duplicability and protein connectivity in human and mouse.
Trends in genetics : TIG 2007;23(8):375-8.
2007: Kousuke Hanada; Xu Zhang; Justin O Borevitz; Wen-Hsiung Li; Shin-Han Shiu
A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection.
Genome research 2007;17(5):632-40.
2007: Matthew A Saunders; Han Liang; Wen-Hsiung Li
Human polymorphism at microRNAs and microRNA target sites.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(9):3300-5.
2006: Kousuke Hanada; Takashi Gojobori; Wen-Hsiung Li
Radical amino acid change versus positive selection in the evolution of viral envelope proteins.
Gene 2006;385():83-8.
2006: Jianying Gu; Wen-Hsiung Li
Are GC-rich isochores vanishing in mammals?
Gene 2006;385():50-6.
2006: Matthew A Saunders; Jeffrey M Good; Elizabeth C Lawrence; Robert E Ferrell; Wen-Hsiung Li; Michael W Nachman
Human adaptive evolution at Myostatin (GDF8), a regulator of muscle growth.
American journal of human genetics 2006;79(6):1089-97.
2006: Yeong-Shin Lin; Jake K Byrnes; Jenn-Kang Hwang; Wen-Hsiung Li
Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(39):14412-6.
2006: Jake K Byrnes; Geoffrey P Morris; Wen-Hsiung Li
Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion.
Molecular biology and evolution 2006;23(6):1136-43.
2006: Shin-Han Shiu; Jake K Byrnes; Runsun Pan; Peng Zhang; Wen-Hsiung Li
Role of positive selection in the retention of duplicate genes in mammalian genomes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(7):2232-6.
2006: Joonyup Kim; Shin-Han Shiu; Sharon Thoma; Wen-Hsiung Li; Sara E Patterson
Patterns of expansion and expression divergence in the plant polygalacturonase gene family.
Genome biology 2006;7(9):R87.
2006: Anuphap Prachumwat; Wen-Hsiung Li
Protein function, connectivity, and duplicability in yeast.
Molecular biology and evolution 2006;23(1):30-9.
2005: Wen-Hsiung Li; Jing Yang; Xun Gu
Expression divergence between duplicate genes.
Trends in genetics : TIG 2005;21(11):602-7.
2005: Ying Tan; Anne D Yoder; Nayuta Yamashita; Wen-Hsiung Li
Evidence from opsin genes rejects nocturnality in ancestral primates.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(41):14712-6.
2005: Jing Yang; Andrew Su; Wen-Hsiung Li
Gene expression evolves faster in narrowly than in broadly expressed mammalian genes.
Molecular biology and evolution 2005;22(10):2113-8.
2005: Shin-Han Shiu; Ming-Che Shih; Wen-Hsiung Li
Transcription factor families have much higher expansion rates in plants than in animals.
Plant physiology 2005;139(1):18-26.
2005: Soojin Yi; Wen-Hsiung Li
Molecular evolution of recombination hotspots and highly recombining pseudoautosomal regions in hominoids.
Molecular biology and evolution 2005;22(5):1223-30.
2005: Loïc Ponger; Wen-Hsiung Li
Evolutionary diversification of DNA methyltransferases in eukaryotic genomes.
Molecular biology and evolution 2005;22(4):1119-28.
2005: Shiao-Wei Huang; Robert Friedman; Ning Yu; Alex Yu; Wen-Hsiung Li
How strong is the mutagenicity of recombination in mammals?
Molecular biology and evolution 2005;22(3):426-31.
2005: Liqing Zhang; Henry H S Lu; Wen-yu Chung; Jing Yang; Wen-Hsiung Li
Patterns of segmental duplication in the human genome.
Molecular biology and evolution 2005;22(1):135-41.
2005: Todd H Oakley; Zhenglong Gu; Ehab Abouheif; Nipam H Patel; Wen-Hsiung Li
Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data.
Molecular biology and evolution 2005;22(1):40-50.
2004: Hong Qin; Wei Biao Wu; Josep M Comeron; Martin Kreitman; Wen-Hsiung Li
Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes.
Genetics 2004;168(4):2245-60.
2004: Elizabeth Marland; Anuphap Prachumwat; Natalia Maltsev; Zhenglong Gu; Wen-Hsiung Li
Higher gene duplicabilities for metabolic proteins than for nonmetabolic proteins in yeast and E. coli.
Journal of molecular evolution 2004;59(6):806-14.
2004: Yun-Huei Tzeng; Runsun Pan; Wen-Hsiung Li
Comparison of three methods for estimating rates of synonymous and nonsynonymous nucleotide substitutions.
Molecular biology and evolution 2004;21(12):2290-8.
2004: Peng Zhang; Wanli Min; Wen-Hsiung Li
Different age distribution patterns of human, nematode, and Arabidopsis duplicate genes.
Gene 2004;342(2):263-8.
2004: Jing Yang; Wen-Hsiung Li
Developmental constraint on gene duplicability in fruit flies and nematodes.
Gene 2004;340(2):237-40.
2004: Zhenglong Gu; Scott A Rifkin; Kevin P White; Wen-Hsiung Li
Duplicate genes increase gene expression diversity within and between species.
Nature genetics 2004;36(6):577-9.
2004: Shin-Han Shiu; Wojciech M Karlowski; Runsun Pan; Yun-Huei Tzeng; Klaus F X Mayer; Wen-Hsiung Li
Comparative analysis of the receptor-like kinase family in Arabidopsis and rice.
The Plant cell 2004;16(5):1220-34.
2004: Shin-Han Shiu; Wen-Hsiung Li
Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes.
Molecular biology and evolution 2004;21(5):828-40.
2004: Ning Yu; Michael I Jensen-Seaman; Leona Chemnick; Oliver Ryder; Wen-Hsiung Li
Nucleotide diversity in gorillas.
Genetics 2004;166(3):1375-83.
2004: Liqing Zhang; Wen-Hsiung Li
Mammalian housekeeping genes evolve more slowly than tissue-specific genes.
Molecular biology and evolution 2004;21(2):236-9.
2004: Soojin Yi; Tyrone J Summers; Nathaniel M Pearson; Wen-Hsiung Li
Recombination has little effect on the rate of sequence divergence in pseudoautosomal boundary 1 among humans and great apes.
Genome research 2004;14(1):37-43.
2003: Jing Yang; Richard Lusk; Wen-Hsiung Li
Organismal complexity, protein complexity, and gene duplicability.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(26):15661-5.
2003: Jian Lu; Wen-Hsiung Li; Chung-I Wu
Comment on "Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes".
Science (New York, N.Y.) 2003;302(5647):988; author reply 988.
2003: Hong Qin; Henry H S Lu; Wei Biao Wu; Wen-Hsiung Li
Evolution of the yeast protein interaction network.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(22):12820-4.
2003: Michael I Jensen-Seaman; Wen-Hsiung Li
Evolution of the hominoid semenogelin genes, the major proteins of ejaculated semen.
Journal of molecular evolution 2003;57(3):261-70.
2003: Ning Yu; Michael I Jensen-Seaman; Leona Chemnick; Judith R Kidd; Amos S Deinard; Oliver Ryder; Kenneth K Kidd; Wen-Hsiung Li
Low nucleotide diversity in chimpanzees and bonobos.
Genetics 2003;164(4):1511-8.
2003: Kateryna D Makova; Wen-Hsiung Li
Divergence in the spatial pattern of gene expression between human duplicate genes.
Genome research 2003;13(7):1638-45.
2003: Anton Nekrutenko; Wen-Yu Chung; Wen-Hsiung Li
ETOPE: Evolutionary test of predicted exons.
Nucleic acids research 2003;31(13):3564-7.
2003: Jing Yang; Zhenglong Gu; Wen-Hsiung Li
Rate of protein evolution versus fitness effect of gene deletion.
Molecular biology and evolution 2003;20(5):772-4.
2003: Zhenglong Gu; Lars M Steinmetz; Xun Gu; Curt Scharfe; Ronald W Davis; Wen-Hsiung Li
Role of duplicate genes in genetic robustness against null mutations.
Nature 2003;421(6918):63-6.
2003: Peng Zhang; Zhenglong Gu; Wen-Hsiung Li
Different evolutionary patterns between young duplicate genes in the human genome.
Genome biology 2003;4(9):R56.
2003: Wen-Hsiung Li; Zhenglong Gu; Andre Cavalcanti; Anton Nekrutenko
Detection of gene duplications and block duplications in eukaryotic genomes.
Journal of structural and functional genomics 2003;3(1-4):27-34.
2003: Andre Cavalcanti; Ricardo Ferreira; Zhenglong Gu; Wen-Hsiung Li
Patterns of gene duplication in Saccharomyces cerevisiae and Caenorhabditis elegans.
Journal of molecular evolution 2003;56(1):28-37.
2002: Soojin Yi; Darrell L Ellsworth; Wen-Hsiung Li
Slow molecular clocks in Old World monkeys, apes, and humans.
Molecular biology and evolution 2002;19(12):2191-8.
2002: Ning Yu; Yang-Xin Fu; Wen-Hsiung Li
DNA polymorphism in a worldwide sample of human X chromosomes.
Molecular biology and evolution 2002;19(12):2131-41.
2002: Henrik Kaessmann; Sebastian K Zoellner ; Anton Nekrutenko; Wen-Hsiung Li
Signatures of domain shuffling in the human genome.
Genome research 2002;12(11):1642-50.
2002: Soojin Yi; Bryan Bernat; Gabor Pal; Anthony A Kossiakoff; Wen-Hsiung Li
Functional promiscuity of squirrel monkey growth hormone receptor toward both primate and nonprimate growth hormones.
Molecular biology and evolution 2002;19(7):1083-92.
2002: Susan Cropp; Sue Boinski; Wen-Hsiung Li
Allelic variation in the squirrel monkey x-linked color vision gene: biogeographical and behavioral correlates.
Journal of molecular evolution 2002;54(6):734-45.
2002: Ning Yu; Feng-Chi Chen; Satoshi Ota; Lynn B Jorde; Pekka Pamilo; László Patthy; Michele Ramsay; Trefor Jenkins; Song-Kun Shyue; Wen-Hsiung Li
Larger genetic differences within africans than between Africans and Eurasians.
Genetics 2002;161(1):269-74.
2002: Kateryna D Makova; Wen-Hsiung Li
Strong male-driven evolution of DNA sequences in humans and apes.
Nature 2002;416(6881):624-6.
2002: Zhenglong Gu; Andre Cavalcanti; Feng-Chi Chen; Peter Bouman; Wen-Hsiung Li
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast.
Molecular biology and evolution 2002;19(3):256-62.
2002: Anton Nekrutenko; Kateryna D Makova; Wen-Hsiung Li
The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study.
Genome research 2002;12(1):198-202.
2001: Anton Nekrutenko; Wen-Hsiung Li
Transposable elements are found in a large number of human protein-coding genes.
Trends in genetics : TIG 2001;17(11):619-21.
2001: S Ota; Wen-Hsiung Li
NJML+: an extension of the NJML method to handle protein sequence data and computer software implementation.
Molecular biology and evolution 2001;18(11):1983-92.
2001: Kateryna D Makova; Michele Ramsay; Trefor Jenkins; Wen-Hsiung Li
Human DNA sequence variation in a 6.6-kb region containing the melanocortin 1 receptor promoter.
Genetics 2001;158(3):1253-68.
2001: Wen-Hsiung Li; Zhenglong Gu; H Wang; Anton Nekrutenko
Evolutionary analyses of the human genome.
Nature 2001;409(6822):847-9.
2001: Ning Yu; Zhongming Zhao; Yang-Xin Fu; N Sambuughin; Michele Ramsay; Trefor Jenkins; E Leskinen; László Patthy; Lynn B Jorde; T Kuromori; Wen-Hsiung Li
Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1.
Molecular biology and evolution 2001;18(2):214-22.
2000: Z Gu; H Wang; Anton Nekrutenko; Wen-Hsiung Li
Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence.
Gene 2000;259(1-2):81-8.
2000: Anton Nekrutenko; Wen-Hsiung Li
Assessment of compositional heterogeneity within and between eukaryotic genomes.
Genome research 2000;10(12):1986-95.
2000: Zhongming Zhao; Li Jin; Yang-Xin Fu; Michele Ramsay; Trefor Jenkins; E Leskinen; Pekka Pamilo; Mária Trexler; László Patthy; Lynn B Jorde; S Ramos-Onsins; Ning Yu; Wen-Hsiung Li
Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(21):11354-8.
2000: S Ota; Wen-Hsiung Li
NJML: a hybrid algorithm for the neighbor-joining and maximum-likelihood methods.
Molecular biology and evolution 2000;17(9):1401-9.
2000: Andrei Rodin; Wen-Hsiung Li
A rapid heuristic algorithm for finding minimum evolution trees.
Molecular phylogenetics and evolution 2000;16(2):173-9.
2000: N J Tourasse; Wen-Hsiung Li
Selective constraints, amino acid composition, and the rate of protein evolution.
Molecular biology and evolution 2000;17(4):656-64.
1999: Y Tan; Wen-Hsiung Li
Trichromatic vision in prosimians.
Nature 1999;402(6757):36.
1999: N J Tourasse; Wen-Hsiung Li
Performance of the relative-rate test under nonstationary models of nucleotide substitution.
Molecular biology and evolution 1999;16(8):1068-78.
1999: B K Rana; D Hewett-Emmett; Li Jin; B H Chang; N Sambuughin; M Lin; S Watkins; Michael Bamshad; Lynn B Jorde; Michele Ramsay; Trefor Jenkins; Wen-Hsiung Li
High polymorphism at the human melanocortin 1 receptor locus.
Genetics 1999;151(4):1547-57.
1998: S Boissinot; Y Tan; S K Shyue; Horacio Schneider; Iracilda Sampaio; K Neiswanger; D Hewett-Emmett; Wen-Hsiung Li
Origins and antiquity of X-linked triallelic color vision systems in New World monkeys.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(23):13749-54.
1998: David Hunt; KS Dulai; Jill A Cowing; C Julliot; John D Mollon; James K Bowmaker; Wen-Hsiung Li; D Hewett-Emmett
Molecular evolution of trichromacy in primates.
Vision research 1998;38(21):3299-306.
1998: S K Shyue; S Boissinot; Horacio Schneider; Iracilda Sampaio; M P C Schneider; C R Abee; L Williams; D Hewett-Emmett; H G Sperling; Jill A Cowing; KS Dulai; David Hunt; Wen-Hsiung Li
Molecular genetics of spectral tuning in New World monkey color vision.
Journal of molecular evolution 1998;46(6):697-702.
1998: L C Shimmin; J Miller; H N Tran; Wen-Hsiung Li
Contrasting levels of DNA polymorphism at the autosomal and X-linked visual color pigment loci in humans and squirrel monkeys.
Molecular biology and evolution 1998;15(4):449-55.
1998: X Gu; D Hewett-Emmett; Wen-Hsiung Li
Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria.
Genetica 1998;102-103(1-6):383-91.
1997: Y H Zhou; D Hewett-Emmett; J P Ward; Wen-Hsiung Li
Unexpected conservation of the X-linked color vision gene in nocturnal prosimians: evidence from two bush babies.
Journal of molecular evolution 1997;45(6):610-8.
1997: H Sun; Andrei Rodin; Y Zhou; Douglas P Dickinson; D E Harper; D Hewett-Emmett; Wen-Hsiung Li
Evolution of paired domains: isolation and sequencing of jellyfish and hydra Pax genes related to Pax-5 and Pax-6.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(10):5156-61.
1997: L C Shimmin; P Mai; Wen-Hsiung Li
Sequences and evolution of human and squirrel monkey blue opsin genes.
Journal of molecular evolution 1997;44(4):378-82.
1997: Y X Fu; Wen-Hsiung Li
Estimating the age of the common ancestor of a sample of DNA sequences.
Molecular biology and evolution 1997;14(2):195-9.
1978: Wen-Hsiung Li
Maintenance of Genetic Variability under the Joint Effect of Mutation, Selection and Random Drift.
Genetics 1978;90(2):349-82.
1976: Wen-Hsiung Li
A Mixed Model of Mutation for Electrophoretic Identity of Proteins within and between Populations.
Genetics 1976;83(2):423-32.