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Randal Linder

Research Profile

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Computational Biology

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Horizontal Gene Transfer

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Publications

TOP 3
Serita Nelesen; Li-San Wang; C Randal Linder; Kevin Liu; Tandy Warnow
DACTAL: divide-and-conquer trees (almost) without alignments.
M Shel Swenson; C Randal Linder; Rahul Suri; Tandy Warnow
SuperFine: fast and accurate supertree estimation.
Kevin Liu; C Randal Linder; Tandy Warnow
RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation.

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All Publications

2012: Serita Nelesen; Li-San Wang; C Randal Linder; Kevin Liu; Tandy Warnow
DACTAL: divide-and-conquer trees (almost) without alignments.
Bioinformatics (Oxford, England) 2012;28(12):i274-82.
2012: M Shel Swenson; C Randal Linder; Rahul Suri; Tandy Warnow
SuperFine: fast and accurate supertree estimation.
Systematic biology 2012;61(2):214-27.
2011: Kevin Liu; C Randal Linder; Tandy Warnow
RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation.
PloS one 2011;6(11):e27731.
2011: M Shel Swenson; Rahul Suri; C Randal Linder; Tandy Warnow
An experimental study of Quartets MaxCut and other supertree methods.
Algorithms for molecular biology : AMB 2011;6():7.
2010: Kevin Liu; C Randal Linder; Tandy Warnow
Multiple sequence alignment: a major challenge to large-scale phylogenetics.
PLoS currents 2010;2():RRN1198.
2010: C Randal Linder; Rahul Suri; Kevin Liu; Tandy Warnow
Benchmark datasets and software for developing and testing methods for large-scale multiple sequence alignment and phylogenetic inference.
PLoS currents 2010;2():RRN1195.
2010: M Shel Swenson; François Barbançon; Tandy Warnow; C Randal Linder
A simulation study comparing supertree and combined analysis methods using SMIDGen.
Algorithms for molecular biology : AMB 2010;5():8.
2009: Kevin Liu; Sindhu Raghavan; Serita Nelesen; C Randal Linder; Tandy Warnow
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees.
Science (New York, N.Y.) 2009;324(5934):1561-4.
2009: Kevin Liu; Serita Nelesen; Sindhu Raghavan; C Randal Linder; Tandy Warnow
Barking up the wrong treelength: the impact of gap penalty on alignment and tree accuracy.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2009;6(1):7-21.
2008: P Roxanne Steele; Mary Guisinger-Bellian; C Randal Linder; Robert K Jansen
Phylogenetic utility of 141 low-copy nuclear regions in taxa at different taxonomic levels in two distantly related families of rosids.
Molecular phylogenetics and evolution 2008;48(3):1013-26.
2008: S Nelesen; K Liu; D Zhao; C Randal Linder; Tandy Warnow
The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2008;():25-36.
2007: Ruth E Timme; Beryl B Simpson; C Randal Linder
High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer.
American journal of botany 2007;94(11):1837-52.
2007: Andrew J McElrone; Justin Bichler; William T Pockman; Robert N Addington; C Randal Linder; Robert B Jackson
Aquaporin-mediated changes in hydraulic conductivity of deep tree roots accessed via caves.
Plant, cell & environment 2007;30(11):1411-21.
2005: Luay Nakhleh; Tandy Warnow; C Randal Linder; Katherine St John
Reconstructing reticulate evolution in species-theory and practice.
Journal of computational biology : a journal of computational molecular cell biology 2005;12(6):796-811.
2004: C Randal Linder; Loren H Rieseberg
Reconstructing patterns of reticulate evolution in plants.
American journal of botany 2004;91(10):1700-8.
2004: Weijia Xu; Willard J Briggs; Joanna Padolina; Ruth Timme; Wenguo Liu; C Randal Linder; Daniel P Miranker
Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i355-62.
2004: Bernard M E Moret; Luay Nakhleh; Tandy Warnow; C Randal Linder; Anna Tholse; Anneke Padolina; Jerry Sun; Ruth Timme
Phylogenetic networks: modeling, reconstructibility, and accuracy.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2004;1(1):13-23.
2003: Luay Nakhleh; Jerry Sun; Tandy Warnow; C Randal Linder; Bernard M E Moret; Anna Tholse
Towards the development of computational tools for evaluating phylogenetic network reconstruction methods.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2003;():315-26.
2003: Mark C Ungerer; C Randal Linder; Loren H Rieseberg
Effects of genetic background on response to selection in experimental populations of Arabidopsis thaliana.
Genetics 2003;163(1):277-86.
2000: C Randal Linder; L A Moore; Robert B Jackson
A universal molecular method for identifying underground plant parts to species.
Molecular ecology 2000;9(10):1549-59.